From 349b58650492c1c3423569a704b89183339d8db8 Mon Sep 17 00:00:00 2001
From: Jonathan Baber <jonbaber@gmail.com>
Date: Thu, 4 Apr 2019 09:08:54 +1000
Subject: [PATCH] bumped variant annotator pom

---
 .../variant_annotator2.13_to_2.14_migration.sql    | 14 +++++++-------
 pom.xml                                            |  2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/patient-db/src/main/resources/patches/variant_annotator2.13_to_2.14_migration.sql b/patient-db/src/main/resources/patches/variant_annotator2.13_to_2.14_migration.sql
index 3f6cca22d4..cf5014cc08 100644
--- a/patient-db/src/main/resources/patches/variant_annotator2.13_to_2.14_migration.sql
+++ b/patient-db/src/main/resources/patches/variant_annotator2.13_to_2.14_migration.sql
@@ -1,7 +1,7 @@
-
-ALTER TABLE structuralVariant ADD COLUMN startAnchoringSupportDistance int after insertSequenceRepeatCoverage;
-ALTER TABLE structuralVariant ADD COLUMN endAnchoringSupportDistance int after startAnchoringSupportDistance;
-ALTER TABLE structuralVariant CHANGE COLUMN startTumourVariantFragmentCount startTumorVariantFragmentCount int;
-ALTER TABLE structuralVariant CHANGE COLUMN startTumourReferenceFragmentCount startTumorReferenceFragmentCount int;
-ALTER TABLE structuralVariant CHANGE COLUMN endTumourVariantFragmentCount endTumorVariantFragmentCount int;
-ALTER TABLE structuralVariant CHANGE COLUMN endTumourReferenceFragmentCount endTumorReferenceFragmentCount int;
\ No newline at end of file
+ALTER TABLE structuralVariant
+    ADD COLUMN startAnchoringSupportDistance int after insertSequenceRepeatCoverage,
+    ADD COLUMN endAnchoringSupportDistance int after startAnchoringSupportDistance,
+    CHANGE COLUMN startTumourVariantFragmentCount startTumorVariantFragmentCount int,
+    CHANGE COLUMN startTumourReferenceFragmentCount startTumorReferenceFragmentCount int,
+    CHANGE COLUMN endTumourVariantFragmentCount endTumorVariantFragmentCount int,
+    CHANGE COLUMN endTumourReferenceFragmentCount endTumorReferenceFragmentCount int;
\ No newline at end of file
diff --git a/pom.xml b/pom.xml
index b96bc6fd24..3cef3c91e7 100644
--- a/pom.xml
+++ b/pom.xml
@@ -55,7 +55,7 @@
         <hmf-extensions.version>local-SNAPSHOT</hmf-extensions.version>
 
         <hmf-patient-db.version>3.19</hmf-patient-db.version>
-        <hmf-variant-annotation.version>2.13</hmf-variant-annotation.version>
+        <hmf-variant-annotation.version>2.14</hmf-variant-annotation.version>
         <hmf-sv-analyser.version>1.0</hmf-sv-analyser.version>
         <hmf-sv-graphs.version>1.0</hmf-sv-graphs.version>