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Exception when changing PCA icon #2

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shaze opened this issue Aug 31, 2021 · 1 comment
Open

Exception when changing PCA icon #2

shaze opened this issue Aug 31, 2021 · 1 comment
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bug Something isn't working

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@shaze
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shaze commented Aug 31, 2021

I click on an individual, choose "group icon data", pick a group and press the "group icon button" and choose "change icon"

Exception in thread "JavaFX Application Thread" java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1787)
at javafx.fxml.FXMLLoader$ControllerMethodEventHandler.handle(FXMLLoader.java:1670)
at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
at javafx.event.Event.fireEvent(Event.java:198)
at javafx.scene.Node.fireEvent(Node.java:8879)
at javafx.scene.control.Button.fire(Button.java:200)
at com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(ButtonBehavior.java:206)
at com.sun.javafx.scene.control.inputmap.InputMap.handle(InputMap.java:274)
at com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(CompositeEventHandler.java:218)
at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:80)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
at javafx.event.Event.fireEvent(Event.java:198)
at javafx.scene.Scene$MouseHandler.process(Scene.java:3851)
at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579)
at javafx.scene.Scene.processMouseEvent(Scene.java:1849)
at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434)
at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433)
at com.sun.glass.ui.View.handleMouseEvent(View.java:556)
at com.sun.glass.ui.View.notifyMouse(View.java:942)
at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127)
at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoopImpl(Native Method)
at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoop(MacApplication.java:109)
at com.sun.glass.ui.Application.enterNestedEventLoop(Application.java:509)
at com.sun.glass.ui.EventLoop.enter(EventLoop.java:107)
at com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(QuantumToolkit.java:591)
at javafx.stage.Stage.showAndWait(Stage.java:465)
at org.h3abionet.genesis.model.PCAGraph.showIndividualDetails(PCAGraph.java:806)
at org.h3abionet.genesis.model.PCAGraph.lambda$setSubjectMouseEvent$0(PCAGraph.java:448)
at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:49)
at javafx.event.Event.fireEvent(Event.java:198)
at javafx.scene.Scene$ClickGenerator.postProcess(Scene.java:3564)
at javafx.scene.Scene$ClickGenerator.access$8200(Scene.java:3492)
at javafx.scene.Scene$MouseHandler.process(Scene.java:3860)
at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579)
at javafx.scene.Scene.processMouseEvent(Scene.java:1849)
at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434)
at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433)
at com.sun.glass.ui.View.handleMouseEvent(View.java:556)
at com.sun.glass.ui.View.notifyMouse(View.java:942)
at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127)
at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoopImpl(Native Method)
at com.sun.glass.ui.mac.MacApplication._enterNestedEventLoop(MacApplication.java:109)
at com.sun.glass.ui.Application.enterNestedEventLoop(Application.java:509)
at com.sun.glass.ui.EventLoop.enter(EventLoop.java:107)
at com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(QuantumToolkit.java:591)
at javafx.stage.Stage.showAndWait(Stage.java:465)
at org.h3abionet.genesis.model.PCAGraph.showIndividualDetails(PCAGraph.java:806)
at org.h3abionet.genesis.model.PCAGraph.lambda$setSubjectMouseEvent$0(PCAGraph.java:448)
at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:86)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:238)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:191)
at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:59)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:58)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:56)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:114)
at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:74)
at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:54)
at javafx.event.Event.fireEvent(Event.java:198)
at javafx.scene.Scene$ClickGenerator.postProcess(Scene.java:3564)
at javafx.scene.Scene$ClickGenerator.access$8200(Scene.java:3492)
at javafx.scene.Scene$MouseHandler.process(Scene.java:3860)
at javafx.scene.Scene$MouseHandler.access$1200(Scene.java:3579)
at javafx.scene.Scene.processMouseEvent(Scene.java:1849)
at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2588)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:397)
at com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(GlassViewEventHandler.java:295)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(GlassViewEventHandler.java:434)
at com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(QuantumToolkit.java:390)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:433)
at com.sun.glass.ui.View.handleMouseEvent(View.java:556)
at com.sun.glass.ui.View.notifyMouse(View.java:942)
at com.sun.glass.ui.mac.MacView.notifyMouse(MacView.java:127)
Caused by: java.lang.reflect.InvocationTargetException
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at com.sun.javafx.reflect.Trampoline.invoke(MethodUtil.java:76)
at jdk.internal.reflect.GeneratedMethodAccessor29.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at com.sun.javafx.reflect.MethodUtil.invoke(MethodUtil.java:273)
at com.sun.javafx.fxml.MethodHelper.invoke(MethodHelper.java:83)
at javafx.fxml.FXMLLoader$MethodHandler.invoke(FXMLLoader.java:1782)
... 125 more
Caused by: java.lang.NullPointerException: The color components or name must be specified
at javafx.scene.paint.Color.web(Color.java:394)
at javafx.scene.paint.Color.web(Color.java:647)
at org.h3abionet.genesis.controller.IconOptionsController.setIconColorValue(IconOptionsController.java:129)
at org.h3abionet.genesis.controller.PCAIndividualDetailsController.changeIcon(PCAIndividualDetailsController.java:152)
... 136 more
@shaze shaze added the bug Something isn't working label Aug 31, 2021
@shaze
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shaze commented Aug 31, 2021

The problem appears to be that sometimes when you click on the individual, there is a pop up with the PCA position but not the individuals' identification. This appears to happen when the PCA is in zoom mode.

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