Add muon tools and tests #5872
Add muon tools and tests #5872
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| <tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0"> | |||
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please add a profile version.
| <tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0"> | |
| <tool id="assign_cell_type_labels_mudata" name="Assign Cell Type Labels for MuData" version="0.1.0" profile="22.05"> |
| ]]></configfile> | ||
| </configfiles> | ||
| <inputs> | ||
| <param name="rna_atac_input" type="data" format="h5mu" label="RNA ATAC Data Matrix"/> |
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this needs to be a Galaxy datatype. What is h5mu? N normal hdf5 format?
| <inputs> | ||
| <param name="mudata_input" type="data" format="h5mu" label="MuData input file to run processing" help="(.h5mu)"/> | ||
| <conditional name="method"> | ||
| <param argument="method" type="select" label="Method used for processing"> |
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here is something off with the alignment of text, please try https://github.com/galaxyproject/galaxy-language-server this can also reformat your file automatically ...
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This was an old work from @ivelet. Please do not review it already. I will fix this in the next weeks. |
… this function yet
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@ivelet please mark this as ready to review |
| <param argument="random_state" type="integer" value="@SEED@" optional="true" label="Random seed for the optimization"/> | ||
| </xml> | ||
| <xml name="param_key_added" tokens="key_added"> | ||
| <param argument="key_added" type="text" value="@KEY_ADDED@" label="mdata.obs key where cluster labels to be added"/> |
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@pavanvidem we do have in other tools a validator for keys do we?
| If specified, look for .obsp[.uns[neighbors_key]['connectivities_key']] in each modality for connectivities."/> | ||
| </xml> | ||
| <xml name="param_directed"> | ||
| <param argument="directed" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Treat the graph as directed or undirected"/> |
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The label does not indicate if true means directed or undirected I think.
FOR CONTRIBUTOR: