diff --git a/CITATIONS.md b/CITATIONS.md index 1f1d703..8ea63db 100644 --- a/CITATIONS.md +++ b/CITATIONS.md @@ -81,7 +81,7 @@ - [abricate](https://github.com/tseemann/abricate) - [iPHoP](https://bitbucket.org/srouxjgi/iphop/src/main/) - > Roux S, Camargo A P, Coutinho F H, et al. iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes[J]. bioRxiv, 2022. + > Roux S, Camargo AP, Coutinho FH, Dabdoub SM, Dutilh BE, Nayfach S, Tritt A. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS biology. 2023 Apr 21;21(4):e3002083. - [bacphlip](https://github.com/adamhockenberry/bacphlip) > Hockenberry A J, Wilke C O. BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains[J]. PeerJ, 2021, 9: e11396. diff --git a/conf/modules.config b/conf/modules.config index 251122f..97df217 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -53,7 +53,7 @@ process { } withLabel: viroprofiler_host { - container = 'denglab/viroprofiler-host:v0.2' + container = 'denglab/viroprofiler-host:v0.1' } withLabel: viroprofiler_replicyc { @@ -65,7 +65,7 @@ process { } withLabel: viroprofiler_virsorter2 { - container = 'denglab/viroprofiler-base:v0.2.2' + container = 'denglab/viroprofiler-virsorter2:v0.2.2' } withLabel: viroprofiler_vpfkit {