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Use dedicated alignment for hmmsearch-based structure search #210

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thomashopf opened this issue Feb 25, 2019 · 0 comments
Open

Use dedicated alignment for hmmsearch-based structure search #210

thomashopf opened this issue Feb 25, 2019 · 0 comments
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enhancement

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@thomashopf
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Right now, comparison using alignment from align stage may lead to different structure comparisons for different bitscore/e-value thresholds. Would be better to build a dedicated alignment in the compare stage (e.g. using 3 iterations against a redundancy-reduced database like uniref 50)
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@thomashopf