diff --git a/bin/cnv_facets.R b/bin/cnv_facets.R index 398e338..586e504 100755 --- a/bin/cnv_facets.R +++ b/bin/cnv_facets.R @@ -31,7 +31,7 @@ suppressMessages(library(gridExtra)) # ----------------------------------------------------------------------------- -VERSION= sprintf('0.12.1; facets=%s', packageVersion('facets')) +VERSION= sprintf('0.13.0; facets=%s', packageVersion('facets')) docstring<- sprintf('DESCRIPTION \\n\\ Detect somatic copy number variants (CNVs) and estimate purity and ploidy in a\\n\\ @@ -841,7 +841,7 @@ if(sys.nframe() == 0){ write(sprintf('[%s] Plotting spider...', Sys.time()), stderr()) pdf(paste0(xargs$out, '.spider.pdf'), width= 16/2.54, height= 14/2.54) par(las= 1, mar= c(3, 3, 1, 1), mgp= c(1.5, 0.5, 0), tcl= -0.3) - logRlogORspider(facets$proc_out, facets$proc_out$dipLogR) + logRlogORspider(facets$proc_out$out, facets$proc_out$dipLogR) x_ <- dev.off() si<- capture.output(sessionInfo())