context.jsonld

{
   "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\nGeneration date: 2019-09-19 08:32\nSchema: biolink_model\n\nid: https://w3id.org/biolink/biolink-model\ndescription: Entity and association taxonomy and datamodel for life-sciences data\nlicense: https://creativecommons.org/publicdomain/zero/1.0/\n",
   "@context": {
      "_comments": null,
      "type": {
         "@id": "rdf:type"
      },
      "BFO": "http://purl.obolibrary.org/obo/BFO_",
      "BIOGRID": "http://thebiogrid.org/",
      "BioSample": "http://example.org/UNKNOWN/BioSample/",
      "CHEBI": "http://purl.obolibrary.org/obo/CHEBI_",
      "CHEMBL.COMPOUND": "http://identifiers.org/chembl.compound/",
      "CHEMBL.TARGET": "http://identifiers.org/chembl.target/",
      "CIO": "http://purl.obolibrary.org/obo/CIO_",
      "CIViC": "http://example.org/UNKNOWN/CIViC/",
      "CL": "http://purl.obolibrary.org/obo/CL_",
      "CLO": "http://purl.obolibrary.org/obo/CLO_",
      "ClinVar": "http://www.ncbi.nlm.nih.gov/clinvar/",
      "ECO": "http://purl.obolibrary.org/obo/ECO_",
      "ECTO": "http://example.org/UNKNOWN/ECTO/",
      "EFO": "http://purl.obolibrary.org/obo/EFO_",
      "ENSEMBL": "http://ensembl.org/id/",
      "FAO": "http://purl.obolibrary.org/obo/FAO_",
      "GENO": "http://purl.obolibrary.org/obo/GENO_",
      "GO": "http://purl.obolibrary.org/obo/GO_",
      "GOLD.META": "http://identifiers.org/gold.meta/",
      "HANCESTRO": "http://example.org/UNKNOWN/HANCESTRO/",
      "HGNC": "http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=",
      "HP": "http://purl.obolibrary.org/obo/HP_",
      "IAO": "http://purl.obolibrary.org/obo/IAO_",
      "IntAct": "http://example.org/UNKNOWN/IntAct/",
      "MGI": "http://www.informatics.jax.org/accession/MGI:",
      "MIR": "http://identifiers.org/mir/",
      "MONDO": "http://purl.obolibrary.org/obo/MONDO_",
      "NCBIGene": "http://www.ncbi.nlm.nih.gov/gene/",
      "NCIT": "http://purl.obolibrary.org/obo/NCIT_",
      "OBAN": "http://purl.org/oban/",
      "OBI": "http://purl.obolibrary.org/obo/OBI_",
      "OGMS": "http://purl.obolibrary.org/obo/OGMS_",
      "OIO": "http://www.geneontology.org/formats/oboInOwl#",
      "PANTHER": "http://www.pantherdb.org/panther/family.do?clsAccession=",
      "PMID": "http://www.ncbi.nlm.nih.gov/pubmed/",
      "PO": "http://purl.obolibrary.org/obo/PO_",
      "PR": "http://purl.obolibrary.org/obo/PR_",
      "PW": "http://purl.obolibrary.org/obo/PW_",
      "PomBase": "https://www.pombase.org/spombe/result/",
      "RHEA": "http://identifiers.org/rhea/",
      "RNAcentral": "http://example.org/UNKNOWN/RNAcentral/",
      "RO": "http://purl.obolibrary.org/obo/RO_",
      "Reactome": "http://example.org/UNKNOWN/Reactome/",
      "SEMMEDDB": "http://example.org/UNKNOWN/SEMMEDDB/",
      "SGD": "https://www.yeastgenome.org/locus/",
      "SIO": "http://semanticscience.org/resource/SIO_",
      "SO": "http://purl.obolibrary.org/obo/SO_",
      "UBERON": "http://purl.obolibrary.org/obo/UBERON_",
      "UMLSSC": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/TUI/",
      "UMLSSG": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/GROUP/",
      "UMLSST": "https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/STY/",
      "UPHENO": "http://purl.obolibrary.org/obo/UPHENO_",
      "UniProtKB": "http://identifiers.org/uniprot/",
      "VMC": "http://example.org/UNKNOWN/VMC/",
      "WB": "http://identifiers.org/wb/",
      "WD": "http://example.org/UNKNOWN/WD/",
      "ZFIN": "http://zfin.org/",
      "biolinkml": "https://w3id.org/biolink/biolinkml/",
      "dct": "http://example.org/UNKNOWN/dct/",
      "dcterms": "http://purl.org/dc/terms/",
      "dictyBase": "http://dictybase.org/gene/",
      "faldo": "http://biohackathon.org/resource/faldo#",
      "metatype": "https://w3id.org/biolink/biolinkml/type/",
      "owl": "http://www.w3.org/2002/07/owl#",
      "pav": "http://purl.org/pav/",
      "qud": "http://qudt.org/1.1/schema/qudt#",
      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
      "shex": "http://www.w3.org/ns/shex#",
      "skos": "https://www.w3.org/TR/skos-reference/#",
      "void": "http://rdfs.org/ns/void#",
      "wgs": "http://www.w3.org/2003/01/geo/wgs84_pos",
      "xsd": "http://www.w3.org/2001/XMLSchema#",
      "@vocab": "https://w3id.org/biolink/vocab/",
      "actively_involved_in": {
         "@type": "@id",
         "@id": "RO:0002331"
      },
      "affects": {
         "@type": "@id",
         "@id": "SEMMEDDB:AFFECTS"
      },
      "affects_abundance_of": {
         "@type": "@id"
      },
      "affects_activity_of": {
         "@type": "@id"
      },
      "affects_degradation_of": {
         "@type": "@id"
      },
      "affects_expression_of": {
         "@type": "@id"
      },
      "affects_folding_of": {
         "@type": "@id"
      },
      "affects_localization_of": {
         "@type": "@id"
      },
      "affects_metabolic_processing_of": {
         "@type": "@id"
      },
      "affects_molecular_modification_of": {
         "@type": "@id"
      },
      "affects_mutation_rate_of": {
         "@type": "@id"
      },
      "affects_response_to": {
         "@type": "@id"
      },
      "affects_risk_for": {
         "@type": "@id"
      },
      "affects_secretion_of": {
         "@type": "@id"
      },
      "affects_splicing_of": {
         "@type": "@id"
      },
      "affects_stability_of": {
         "@type": "@id"
      },
      "affects_synthesis_of": {
         "@type": "@id"
      },
      "affects_transport_of": {
         "@type": "@id"
      },
      "affects_uptake_of": {
         "@type": "@id"
      },
      "association_type": {
         "@type": "@id",
         "@id": "rdf:type"
      },
      "id": "@id",
      "biomarker_for": {
         "@type": "@id",
         "@id": "RO:0002607"
      },
      "capable_of": {
         "@type": "@id",
         "@id": "RO:0002215"
      },
      "category": {
         "@type": "@id",
         "@id": "rdfs:subClassOf"
      },
      "causes": {
         "@type": "@id",
         "@id": "RO:0002410"
      },
      "change_is_catalyzed_by": {
         "@type": "@id"
      },
      "clinical_modifier_qualifier": {
         "@type": "@id"
      },
      "coexists_with": {
         "@type": "@id",
         "@id": "SEMMEDDB:COEXISTS_WITH"
      },
      "colocalizes_with": {
         "@type": "@id",
         "@id": "RO:00002325"
      },
      "contributes_to": {
         "@type": "@id",
         "@id": "RO:0002326"
      },
      "correlated_with": {
         "@type": "@id",
         "@id": "RO:0002610"
      },
      "creation_date": {
         "@type": "xsd:date",
         "@id": "dcterms:created"
      },
      "decreases_abundance_of": {
         "@type": "@id"
      },
      "decreases_activity_of": {
         "@type": "@id"
      },
      "decreases_degradation_of": {
         "@type": "@id"
      },
      "decreases_expression_of": {
         "@type": "@id"
      },
      "decreases_folding_of": {
         "@type": "@id"
      },
      "decreases_localization_of": {
         "@type": "@id"
      },
      "decreases_metabolic_processing_of": {
         "@type": "@id"
      },
      "decreases_molecular_modification_of": {
         "@type": "@id"
      },
      "decreases_mutation_rate_of": {
         "@type": "@id"
      },
      "decreases_response_to": {
         "@type": "@id"
      },
      "decreases_secretion_of": {
         "@type": "@id"
      },
      "decreases_splicing_of": {
         "@type": "@id"
      },
      "decreases_stability_of": {
         "@type": "@id"
      },
      "decreases_synthesis_of": {
         "@type": "@id"
      },
      "decreases_transport_of": {
         "@type": "@id"
      },
      "decreases_uptake_of": {
         "@type": "@id"
      },
      "derives_from": {
         "@type": "@id",
         "@id": "RO:0001000"
      },
      "derives_into": {
         "@type": "@id",
         "@id": "RO:0001001"
      },
      "description": {
         "@id": "dcterms:description"
      },
      "disrupts": {
         "@type": "@id",
         "@id": "SEMMEDDB:DISRUPTS"
      },
      "distribution": {
         "@type": "@id",
         "@id": "void:Dataset"
      },
      "downloadURL": {
         "@id": "dct:downloadURL"
      },
      "enabled_by": {
         "@type": "@id",
         "@id": "RO:0002333"
      },
      "expressed_in": {
         "@type": "@id",
         "@id": "RO:0002206"
      },
      "expresses": {
         "@type": "@id",
         "@id": "RO:0002292"
      },
      "filler": {
         "@type": "@id"
      },
      "frequency_qualifier": {
         "@type": "@id"
      },
      "gene_associated_with_condition": {
         "@type": "@id",
         "@id": "WD:P2293"
      },
      "genetically_interacts_with": {
         "@type": "@id",
         "@id": "RO:0002435"
      },
      "has_attribute": {
         "@type": "@id"
      },
      "has_attribute_type": {
         "@type": "@id"
      },
      "has_biomarker": {
         "@type": "@id"
      },
      "has_chemical_formula": {
         "@id": "WD:P274"
      },
      "has_confidence_level": {
         "@type": "@id"
      },
      "has_count": {
         "@type": "xsd:integer"
      },
      "has_evidence": {
         "@type": "@id",
         "@id": "RO:0002558"
      },
      "has_gene": {
         "@type": "@id"
      },
      "has_gene_product": {
         "@type": "@id",
         "@id": "RO:0002205"
      },
      "has_input": {
         "@type": "@id",
         "@id": "RO:0002233"
      },
      "has_molecular_consequence": {
         "@type": "@id"
      },
      "has_numeric_value": {
         "@type": "xsd:double"
      },
      "has_output": {
         "@type": "@id",
         "@id": "RO:0002234"
      },
      "has_part": {
         "@type": "@id",
         "@id": "BFO:0000051"
      },
      "has_participant": {
         "@type": "@id",
         "@id": "RO:0000057"
      },
      "has_percentage": {
         "@type": "xsd:double"
      },
      "has_phenotype": {
         "@type": "@id",
         "@id": "RO:0002200"
      },
      "has_qualitative_value": {
         "@type": "@id"
      },
      "has_quantitative_value": {
         "@type": "@id"
      },
      "has_quotient": {
         "@type": "xsd:double"
      },
      "has_total": {
         "@type": "xsd:integer"
      },
      "has_unit": {
         "@type": "UO:0000000"
      },
      "has_zygosity": {
         "@type": "@id"
      },
      "homologous_to": {
         "@type": "@id",
         "@id": "RO:HOM0000001"
      },
      "in_cell_population_with": {
         "@type": "@id"
      },
      "in_complex_with": {
         "@type": "@id"
      },
      "in_pathway_with": {
         "@type": "@id"
      },
      "in_taxon": {
         "@type": "@id",
         "@id": "RO:0002162"
      },
      "increases_abundance_of": {
         "@type": "@id"
      },
      "increases_activity_of": {
         "@type": "@id"
      },
      "increases_degradation_of": {
         "@type": "@id"
      },
      "increases_expression_of": {
         "@type": "@id"
      },
      "increases_folding_of": {
         "@type": "@id"
      },
      "increases_localization_of": {
         "@type": "@id"
      },
      "increases_metabolic_processing_of": {
         "@type": "@id"
      },
      "increases_molecular_modification_of": {
         "@type": "@id"
      },
      "increases_mutation_rate_of": {
         "@type": "@id"
      },
      "increases_response_to": {
         "@type": "@id"
      },
      "increases_secretion_of": {
         "@type": "@id"
      },
      "increases_splicing_of": {
         "@type": "@id"
      },
      "increases_stability_of": {
         "@type": "@id"
      },
      "increases_synthesis_of": {
         "@type": "@id"
      },
      "increases_transport_of": {
         "@type": "@id"
      },
      "increases_uptake_of": {
         "@type": "@id"
      },
      "interacts_with": {
         "@type": "@id",
         "@id": "RO:0002434"
      },
      "iri": {
         "@type": "@id"
      },
      "latitude": {
         "@type": "xsd:float",
         "@id": "wgs:lat"
      },
      "located_in": {
         "@type": "@id",
         "@id": "RO:0001025"
      },
      "location_of": {
         "@type": "@id",
         "@id": "RO:0001015"
      },
      "longitude": {
         "@type": "xsd:float",
         "@id": "wgs:long"
      },
      "manifestation_of": {
         "@type": "@id",
         "@id": "SEMMEDDB:MANIFESTATION_OF"
      },
      "model_of": {
         "@type": "@id",
         "@id": "RO:0003301"
      },
      "molecularly_interacts_with": {
         "@type": "@id",
         "@id": "RO:0002436"
      },
      "name": {
         "@id": "rdfs:label"
      },
      "negated": {
         "@type": "xsd:boolean"
      },
      "negatively_regulates": {
         "@type": "@id"
      },
      "negatively_regulates_entity_to_entity": {
         "@type": "@id",
         "@id": "RO:0002449"
      },
      "negatively_regulates_process_to_process": {
         "@type": "@id",
         "@id": "RO:0002212"
      },
      "object": {
         "@type": "@id",
         "@id": "rdf:object"
      },
      "occurs_in": {
         "@type": "@id",
         "@id": "BFO:0000066"
      },
      "onset_qualifier": {
         "@type": "@id"
      },
      "orthologous_to": {
         "@type": "@id",
         "@id": "RO:HOM0000017"
      },
      "overlaps": {
         "@type": "@id",
         "@id": "RO:0002131"
      },
      "paralogous_to": {
         "@type": "@id",
         "@id": "RO:HOM0000011"
      },
      "part_of": {
         "@type": "@id",
         "@id": "BFO:0000050"
      },
      "participates_in": {
         "@type": "@id",
         "@id": "RO:0000056"
      },
      "physically_interacts_with": {
         "@type": "@id",
         "@id": "WD:P129"
      },
      "positively_regulates": {
         "@type": "@id"
      },
      "positively_regulates_entity_to_entity": {
         "@type": "@id",
         "@id": "RO:0002450"
      },
      "positively_regulates_process_to_process": {
         "@type": "@id",
         "@id": "RO:0002213"
      },
      "precedes": {
         "@type": "@id",
         "@id": "BFO:0000063"
      },
      "predisposes": {
         "@type": "@id",
         "@id": "SEMMEDDB:PREDISPOSES"
      },
      "prevents": {
         "@type": "@id",
         "@id": "RO:0002599"
      },
      "produces": {
         "@type": "@id",
         "@id": "RO:0003000"
      },
      "provided_by": {
         "@type": "@id",
         "@id": "pav:providedBy"
      },
      "publications": {
         "@type": "@id"
      },
      "qualifiers": {
         "@type": "@id"
      },
      "quantifier_qualifier": {
         "@type": "@id"
      },
      "regulates": {
         "@type": "@id",
         "@id": "WD:P128"
      },
      "regulates_entity_to_entity": {
         "@type": "@id",
         "@id": "RO:0002448"
      },
      "regulates_process_to_process": {
         "@type": "@id",
         "@id": "RO:0002211"
      },
      "related_to": {
         "@type": "@id",
         "@id": "owl:ObjectProperty"
      },
      "relation": {
         "@type": "@id",
         "@id": "rdf:predicate"
      },
      "retrievedOn": {
         "@type": "xsd:date",
         "@id": "pav:retrievedOn"
      },
      "same_as": {
         "@type": "@id",
         "@id": "owl:equivalentClass"
      },
      "sequence_variant_qualifier": {
         "@type": "@id"
      },
      "severity_qualifier": {
         "@type": "@id"
      },
      "sex_qualifier": {
         "@type": "@id"
      },
      "source_data_file": {
         "@type": "@id",
         "@id": "dcterms:source"
      },
      "source_version": {
         "@id": "pav:version"
      },
      "source_web_page": {
         "@id": "dcterms:source"
      },
      "stage_qualifier": {
         "@type": "@id"
      },
      "subclass_of": {
         "@type": "@id",
         "@id": "rdfs:subClassOf"
      },
      "subject": {
         "@type": "@id",
         "@id": "rdf:subject"
      },
      "timepoint": {
         "@type": "xsd:dateTime"
      },
      "title": {
         "@id": "dct:title"
      },
      "treated_by": {
         "@type": "@id",
         "@id": "RO:0002302"
      },
      "treats": {
         "@type": "@id",
         "@id": "RO:0002606"
      },
      "update_date": {
         "@type": "xsd:date"
      },
      "versionOf": {
         "@type": "@id",
         "@id": "dct:isVersionOf"
      },
      "xenologous_to": {
         "@type": "@id",
         "@id": "RO:HOM0000018"
      },
      "AnatomicalEntity": {
         "@id": "SIO:010046"
      },
      "Association": {
         "@id": "OBAN:association"
      },
      "BiologicalEntity": {
         "@id": "WD:Q28845870"
      },
      "BiologicalProcess": {
         "@id": "GO:0008150"
      },
      "Cell": {
         "@id": "GO:0005623"
      },
      "CellLine": {
         "@id": "CLO:0000031"
      },
      "CellularComponent": {
         "@id": "GO:0005575"
      },
      "ChemicalSubstance": {
         "@id": "SIO:010004"
      },
      "ChemicalToDiseaseOrPhenotypicFeatureAssociation": {
         "@id": "SIO:000993"
      },
      "ChemicalToGeneAssociation": {
         "@id": "SIO:001257"
      },
      "ChemicalToPathwayAssociation": {
         "@id": "SIO:001250"
      },
      "CodingSequence": {
         "@id": "SO:0000316"
      },
      "ConfidenceLevel": {
         "@id": "CIO:0000028"
      },
      "DataFile": {
         "@id": "EFO:0004095"
      },
      "DataSet": {
         "@id": "IAO:0000100"
      },
      "Disease": {
         "@id": "MONDO:0000001"
      },
      "DiseaseOrPhenotypicFeatureAssociationToLocationAssociation": {
         "@id": "NCIT:R100"
      },
      "Drug": {
         "@id": "WD:Q12140"
      },
      "DrugExposure": {
         "@id": "ECTO:0000509"
      },
      "Environment": {
         "@id": "SIO:000955"
      },
      "EvidenceType": {
         "@id": "ECO:0000000"
      },
      "Exon": {
         "@id": "SO:0000147"
      },
      "Gene": {
         "@id": "SO:0000704"
      },
      "GeneFamily": {
         "@id": "SIO:001380"
      },
      "GeneProduct": {
         "@id": "WD:Q424689"
      },
      "GeneToDiseaseAssociation": {
         "@id": "SIO:000983"
      },
      "GeneToGoTermAssociation": {
         "@id": "http://bio2rdf.org/wormbase_vocabulary:Gene-GO-Association"
      },
      "GeneToPhenotypicFeatureAssociation": {
         "@id": "http://bio2rdf.org/wormbase_vocabulary:Gene-Phenotype-Association"
      },
      "Genome": {
         "@id": "SO:0001026"
      },
      "GenomicEntity": {
         "@id": "SO:0000110"
      },
      "GenomicSequenceLocalization": {
         "@id": "faldo:location"
      },
      "Genotype": {
         "@id": "GENO:0000536"
      },
      "GrossAnatomicalStructure": {
         "@id": "UBERON:0010000"
      },
      "Haplotype": {
         "@id": "GENO:0000871"
      },
      "IndividualOrganism": {
         "@id": "SIO:010000"
      },
      "InformationContentEntity": {
         "@id": "IAO:0000030"
      },
      "MacromolecularComplex": {
         "@id": "SIO:010046"
      },
      "Metabolite": {
         "@id": "CHEBI:25212"
      },
      "MicroRNA": {
         "@id": "SIO:001397"
      },
      "MolecularActivity": {
         "@id": "GO:0003674"
      },
      "MolecularEntity": {
         "@id": "SIO:010341"
      },
      "NamedThing": {
         "@id": "WD:Q35120"
      },
      "NoncodingRNAProduct": {
         "@id": "SIO:001235"
      },
      "Occurrent": {
         "@id": "BFO:0000003"
      },
      "Onset": {
         "@id": "HP:0003674"
      },
      "OrganismTaxon": {
         "@id": "WD:Q16521"
      },
      "OrganismalEntity": {
         "@id": "WD:Q7239"
      },
      "Pathway": {
         "@id": "GO:0007165"
      },
      "PhenotypicFeature": {
         "@id": "UPHENO:0001001"
      },
      "PopulationOfIndividualOrganisms": {
         "@id": "SIO:001061"
      },
      "Protein": {
         "@id": "PR:000000001"
      },
      "Publication": {
         "@id": "IAO:0000311"
      },
      "RNAProduct": {
         "@id": "CHEBI:33697"
      },
      "SequenceVariant": {
         "@id": "GENO:0000002"
      },
      "Transcript": {
         "@id": "SO:0000673"
      },
      "Treatment": {
         "@id": "OGMS:0000090"
      },
      "Zygosity": {
         "@id": "GENO:0000133"
      }
   }
}