Seurat is a sequence analysis program for the discovery of biological events in paired tumor and normal genome and transcriptome data.
Seurat is a console-based program, and it requires that a Java 1.6 runtime is installed on your system. It has only been been tested with versions of Oracle's JRE/JDKs.
It operates on established genomic data formats (BAM,VCF,GTF/ROD).
Please visit https://sites.google.com/site/seuratsomatic/home for binary downloads (JAR) and documentation.
To build Seurat, a Java 1.6 JDK must be installed, as well as Apache Ant.
Simply checkout the repository, and run
ant
in the local clone's directory. A runnable JAR file will be created in
out/artifacts/Seurat_jar