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pyproject.toml
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[tool.poetry]
name = "theia-py"
version = "0.1.2"
description = "Theia: Bleed-Through Correction in Fluorescent Microscopy Images"
authors = [
"Najib Ishaq <[email protected]>",
"Nicholas Schaub <[email protected]>"
]
license = "MIT"
packages = [{include = "theia", from = "src"}]
[tool.poetry.dependencies]
python = ">=3.9,<3.12,!=3.9.7"
numpy = "^1.23.2"
scikit-learn = "^1.2.2"
scipy = "^1.9.0"
tensorflow = "^2.13.0"
[tool.poetry.group.dev.dependencies]
bump2version = "^1.0.1"
pre-commit = "^3.2.2"
black = "^23.3.0"
ruff = "^0.0.261"
mypy = "^1.2.0"
pytest = "^7.4.0"
pytest-sugar = "^0.9.7"
pytest-xdist = "^3.3.1"
pytest-cov = "^4.1.0"
pytest-benchmark = "^4.0.0"
tqdm = "^4.65.0"
imageio = "^2.27.0"
streamlit = "^1.21.0"
matplotlib = "^3.7.1"
seaborn = "^0.12.2"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.mypy]
python_version = 3.9
ignore_missing_imports = true
[[tool.mypy.overrides]]
module = "tensorflow.*"
ignore_errors = true