diff --git a/pipelines/config-examples/bpipe.config_broad b/pipelines/config-examples/bpipe.config_broad deleted file mode 100644 index 3c7b25f..0000000 --- a/pipelines/config-examples/bpipe.config_broad +++ /dev/null @@ -1,14 +0,0 @@ -use="Java-1.8" - -commands { - bwamem { - memory="32g" - threads=8 - walltime="168:00:00" - } - - - bedtools { - memory=8 - } -} diff --git a/pipelines/config-examples/bpipe.config_meerkat b/pipelines/config-examples/bpipe.config_meerkat index b298516..f20bbf6 100644 --- a/pipelines/config-examples/bpipe.config_meerkat +++ b/pipelines/config-examples/bpipe.config_meerkat @@ -1,15 +1,14 @@ +// Defaults walltime="04:00:00" +memory="8g" modules="java" commands { + bwamem { walltime="48:00:00" procs=8 - memory=32 + memory="32g" } - - bedtools { - memory=8 - } } diff --git a/pipelines/config-examples/bpipe.config_template b/pipelines/config-examples/bpipe.config_template index 60b9f4a..ea9e978 100644 --- a/pipelines/config-examples/bpipe.config_template +++ b/pipelines/config-examples/bpipe.config_template @@ -6,7 +6,7 @@ memory="8g" commands { mosdepth { - memory="4g" + memory="8g" } bwamem {