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Tribolium castaneum updates #287

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mpoelchau opened this issue Dec 6, 2024 · 0 comments
Open

Tribolium castaneum updates #287

mpoelchau opened this issue Dec 6, 2024 · 0 comments
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@mpoelchau
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  • we need to add information in the Dbxref attribute to the unmapped_features.txt file. Specifically, the TCAS identifiers.
  • We should make the TCAS identifiers searchable in Jbrowse. Currently you have to add a prefix before the identifier. @mpoelchau should do the following...
    • Add TCAS identifier as an Alias attribute to the mRNA features
    • Also add what's in the protein_id attribute at the CDS level to the mRNA level as Dbxref (GenBank) and Alias
    • would need to re-run flat file to json and re-index the names
    • I've noticed that the OGS3 at ibeetlebase and the OGS at NCBI have different metadata (specifically, not all of the models in the latter have TCAS identifiers). I will need to ask which one is better to use.
@mpoelchau mpoelchau self-assigned this Dec 6, 2024
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