From 1ca214c5d7d632d193d5f67db7670a248bee2e91 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@gmail.com>
Date: Fri, 1 Nov 2024 18:27:52 -0500
Subject: [PATCH 01/15] Rename requirements_dev.txt to requirements.txt

---
 requirements_dev.txt => requirements.txt | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename requirements_dev.txt => requirements.txt (100%)

diff --git a/requirements_dev.txt b/requirements.txt
similarity index 100%
rename from requirements_dev.txt
rename to requirements.txt

From 81ca76b8fe67386a3372a836bc9ed5e636bc3400 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@gmail.com>
Date: Fri, 1 Nov 2024 18:30:02 -0500
Subject: [PATCH 02/15] Create test_requirements.txt

---
 test_requirements.txt | 1 +
 1 file changed, 1 insertion(+)
 create mode 100644 test_requirements.txt

diff --git a/test_requirements.txt b/test_requirements.txt
new file mode 100644
index 0000000..8b13789
--- /dev/null
+++ b/test_requirements.txt
@@ -0,0 +1 @@
+

From 73556db54304a9d009b4120bc43f2c3c4191841c Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@gmail.com>
Date: Fri, 1 Nov 2024 18:31:34 -0500
Subject: [PATCH 03/15] Update setup.py

---
 setup.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/setup.py b/setup.py
index 34bdadd..1806c4a 100644
--- a/setup.py
+++ b/setup.py
@@ -45,7 +45,7 @@
     packages=find_packages(include=["sl_forecast", "sl_forecast.*"]),
     test_suite="tests",
     tests_require=test_requirements,
-    url="https://github.com/audreyr/sl_forecast",
-    version="0.1.0",
+    url="https://github.com/LSSTDESC/sl_forecast",
+    version="0.0.0",
     zip_safe=False,
 )

From b1f5fc45e0e1faec283b577ebfb0c681f734b5fb Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@gmail.com>
Date: Fri, 1 Nov 2024 18:36:57 -0500
Subject: [PATCH 04/15] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 8272dd8..e26dc37 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -36,9 +36,17 @@ repos:
     hooks:
       - id: black-jupyter
         language_version: python3
-  - repo: https://github.com/PyCQA/docformatter
-    rev: v1.7.5
+  hooks:
+  - repo: local
     hooks:
       - id: docformatter
-        additional_dependencies: [tomli]
-        args: [-r, --black, --in-place]
\ No newline at end of file
+        name: docformatter
+        description: Formats docstrings to follow PEP 257.
+        entry: python -Im docformatter
+        additional_dependencies:
+        - docformatter == 1.7.5
+        args:
+        - --in-place
+        language: python
+        types:
+        - python

From 6766d5864bb527b64642fa1493fc802375b6725c Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@gmail.com>
Date: Fri, 1 Nov 2024 18:40:09 -0500
Subject: [PATCH 05/15] Update README.rst

---
 README.rst | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/README.rst b/README.rst
index 1e404a8..b596b19 100644
--- a/README.rst
+++ b/README.rst
@@ -13,6 +13,13 @@ SL Forecast
         :target: https://sl-forecast.readthedocs.io/en/latest/?version=latest
         :alt: Documentation Status
 
+.. image:: https://results.pre-commit.ci/badge/github/LSSTDESC/sl_forecast/main.svg
+   :target: https://results.pre-commit.ci/latest/github/LSSTDESC/sl_forecast/main
+   :alt: pre-commit.ci status
+
+.. image:: https://codecov.io/gh/LSSTDESC/sl_forecast/graph/badge.svg?token=n9xsxU1rbY 
+ :target: https://codecov.io/gh/LSSTDESC/sl_forecast
+
 
 
 

From ba6201d8f71f11228e88556d17a52a414fa4f3b3 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 11:52:26 -0700
Subject: [PATCH 06/15] Refactor .pre-commit-config.yaml for improved
 formatting and consistency

---
 .pre-commit-config.yaml | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b6481ba..b1dc4f4 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -36,7 +36,6 @@ repos:
     hooks:
       - id: black-jupyter
         language_version: python3
-  hooks:
   - repo: local
     hooks:
       - id: docformatter
@@ -44,9 +43,9 @@ repos:
         description: Formats docstrings to follow PEP 257.
         entry: python -Im docformatter
         additional_dependencies:
-        - docformatter == 1.7.5
+          - docformatter == 1.7.5
         args:
-        - --in-place
+          - --in-place
         language: python
         types:
-        - python
+          - python

From 10bec600a63ddf400d15e4fd90d1e29777a98647 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 18 Nov 2024 18:55:02 +0000
Subject: [PATCH 07/15] Autofix formatting from pre-commit.com hooks

---
 docs/conf.py              | 60 +++++++++++++++++++--------------------
 sl_forecast/__init__.py   |  4 +--
 sl_forecast/cli.py        |  4 +--
 tests/test_sl_forecast.py |  6 ++--
 4 files changed, 36 insertions(+), 38 deletions(-)

diff --git a/docs/conf.py b/docs/conf.py
index bd0fb2b..be55ba0 100755
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -19,7 +19,8 @@
 #
 import os
 import sys
-sys.path.insert(0, os.path.abspath('..'))
+
+sys.path.insert(0, os.path.abspath(".."))
 
 import sl_forecast
 
@@ -31,22 +32,22 @@
 
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
-extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+extensions = ["sphinx.ext.autodoc", "sphinx.ext.viewcode"]
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
+templates_path = ["_templates"]
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
 #
 # source_suffix = ['.rst', '.md']
-source_suffix = '.rst'
+source_suffix = ".rst"
 
 # The master toctree document.
-master_doc = 'index'
+master_doc = "index"
 
 # General information about the project.
-project = 'SL Forecast'
+project = "SL Forecast"
 copyright = "2024, Audrey Roy Greenfeld"
 author = "Audrey Roy Greenfeld"
 
@@ -69,10 +70,10 @@
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
 # The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
+pygments_style = "sphinx"
 
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = False
@@ -83,7 +84,7 @@
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = 'alabaster'
+html_theme = "alabaster"
 
 # Theme options are theme-specific and customize the look and feel of a
 # theme further.  For a list of options available for each theme, see the
@@ -94,13 +95,13 @@
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ["_static"]
 
 
 # -- Options for HTMLHelp output ---------------------------------------
 
 # Output file base name for HTML help builder.
-htmlhelp_basename = 'sl_forecastdoc'
+htmlhelp_basename = "sl_forecastdoc"
 
 
 # -- Options for LaTeX output ------------------------------------------
@@ -109,15 +110,12 @@
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',
-
     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',
-
     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',
-
     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
@@ -127,9 +125,13 @@
 # (source start file, target name, title, author, documentclass
 # [howto, manual, or own class]).
 latex_documents = [
-    (master_doc, 'sl_forecast.tex',
-     'SL Forecast Documentation',
-     'Audrey Roy Greenfeld', 'manual'),
+    (
+        master_doc,
+        "sl_forecast.tex",
+        "SL Forecast Documentation",
+        "Audrey Roy Greenfeld",
+        "manual",
+    ),
 ]
 
 
@@ -137,11 +139,7 @@
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'sl_forecast',
-     'SL Forecast Documentation',
-     [author], 1)
-]
+man_pages = [(master_doc, "sl_forecast", "SL Forecast Documentation", [author], 1)]
 
 
 # -- Options for Texinfo output ----------------------------------------
@@ -150,13 +148,13 @@
 # (source start file, target name, title, author,
 #  dir menu entry, description, category)
 texinfo_documents = [
-    (master_doc, 'sl_forecast',
-     'SL Forecast Documentation',
-     author,
-     'sl_forecast',
-     'One line description of project.',
-     'Miscellaneous'),
+    (
+        master_doc,
+        "sl_forecast",
+        "SL Forecast Documentation",
+        author,
+        "sl_forecast",
+        "One line description of project.",
+        "Miscellaneous",
+    ),
 ]
-
-
-
diff --git a/sl_forecast/__init__.py b/sl_forecast/__init__.py
index 1bc99ca..947bec7 100644
--- a/sl_forecast/__init__.py
+++ b/sl_forecast/__init__.py
@@ -1,5 +1,5 @@
 """Top-level package for SL Forecast."""
 
 __author__ = """Audrey Roy Greenfeld"""
-__email__ = 'audreyr@example.com'
-__version__ = '0.1.0'
+__email__ = "audreyr@example.com"
+__version__ = "0.1.0"
diff --git a/sl_forecast/cli.py b/sl_forecast/cli.py
index 8614752..3eb3240 100644
--- a/sl_forecast/cli.py
+++ b/sl_forecast/cli.py
@@ -1,4 +1,5 @@
 """Console script for sl_forecast."""
+
 import sys
 import click
 
@@ -6,8 +7,7 @@
 @click.command()
 def main(args=None):
     """Console script for sl_forecast."""
-    click.echo("Replace this message by putting your code into "
-               "sl_forecast.cli.main")
+    click.echo("Replace this message by putting your code into " "sl_forecast.cli.main")
     click.echo("See click documentation at https://click.palletsprojects.com/")
     return 0
 
diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 8b8ce44..398ab1e 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -27,7 +27,7 @@ def test_command_line_interface(self):
         runner = CliRunner()
         result = runner.invoke(cli.main)
         assert result.exit_code == 0
-        assert 'sl_forecast.cli.main' in result.output
-        help_result = runner.invoke(cli.main, ['--help'])
+        assert "sl_forecast.cli.main" in result.output
+        help_result = runner.invoke(cli.main, ["--help"])
         assert help_result.exit_code == 0
-        assert '--help  Show this message and exit.' in help_result.output
+        assert "--help  Show this message and exit." in help_result.output

From ba10daad57d85c0a9cd314a6dbd5cccc1a084545 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 11:57:55 -0700
Subject: [PATCH 08/15] Remove redundant test class and methods from
 test_sl_forecast.py

---
 tests/test_sl_forecast.py | 30 ------------------------------
 1 file changed, 30 deletions(-)

diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 398ab1e..aeac8ab 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -1,33 +1,3 @@
 #!/usr/bin/env python
 
 """Tests for `sl_forecast` package."""
-
-
-import unittest
-from click.testing import CliRunner
-
-from sl_forecast import sl_forecast
-from sl_forecast import cli
-
-
-class TestSl_forecast(unittest.TestCase):
-    """Tests for `sl_forecast` package."""
-
-    def setUp(self):
-        """Set up test fixtures, if any."""
-
-    def tearDown(self):
-        """Tear down test fixtures, if any."""
-
-    def test_000_something(self):
-        """Test something."""
-
-    def test_command_line_interface(self):
-        """Test the CLI."""
-        runner = CliRunner()
-        result = runner.invoke(cli.main)
-        assert result.exit_code == 0
-        assert "sl_forecast.cli.main" in result.output
-        help_result = runner.invoke(cli.main, ["--help"])
-        assert help_result.exit_code == 0
-        assert "--help  Show this message and exit." in help_result.output

From 365ea798fcf8de40f2972f65a0193ae09b7c71c9 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:04:29 -0700
Subject: [PATCH 09/15] Remove all dependencies from requirements.txt

---
 requirements.txt | 12 ------------
 1 file changed, 12 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index e832d4d..e69de29 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,12 +0,0 @@
-pip==19.2.3
-bump2version==0.5.11
-wheel==0.33.6
-watchdog==0.9.0
-flake8==3.7.8
-tox==3.14.0
-coverage==4.5.4
-Sphinx==1.8.5
-twine==1.14.0
-Click==7.1.2
-
-black==21.7b0

From 95506a0f719f7e3cf98b81b1337e28e99a2e9b0a Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:07:47 -0700
Subject: [PATCH 10/15] Update package metadata and remove CLI script; add
 initial test structure

---
 sl_forecast/__init__.py   |  6 ++----
 sl_forecast/cli.py        | 16 ----------------
 tests/test_sl_forecast.py | 10 ++++++++++
 3 files changed, 12 insertions(+), 20 deletions(-)
 delete mode 100644 sl_forecast/cli.py

diff --git a/sl_forecast/__init__.py b/sl_forecast/__init__.py
index 947bec7..ffda273 100644
--- a/sl_forecast/__init__.py
+++ b/sl_forecast/__init__.py
@@ -1,5 +1,3 @@
-"""Top-level package for SL Forecast."""
+"""Top-level package for sl_forecast."""
 
-__author__ = """Audrey Roy Greenfeld"""
-__email__ = "audreyr@example.com"
-__version__ = "0.1.0"
+__version__ = "0.0.0"
diff --git a/sl_forecast/cli.py b/sl_forecast/cli.py
deleted file mode 100644
index 3eb3240..0000000
--- a/sl_forecast/cli.py
+++ /dev/null
@@ -1,16 +0,0 @@
-"""Console script for sl_forecast."""
-
-import sys
-import click
-
-
-@click.command()
-def main(args=None):
-    """Console script for sl_forecast."""
-    click.echo("Replace this message by putting your code into " "sl_forecast.cli.main")
-    click.echo("See click documentation at https://click.palletsprojects.com/")
-    return 0
-
-
-if __name__ == "__main__":
-    sys.exit(main())  # pragma: no cover
diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index aeac8ab..342383c 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -1,3 +1,13 @@
 #!/usr/bin/env python
 
 """Tests for `sl_forecast` package."""
+
+import pytest
+
+
+class TestSLForecast:
+    """Tests for `sl_forecast` package."""
+
+    @pytest.fixture
+    def test_version(self):
+        from sl_forecast import __version__

From c85c543e98ef5e76267298f91efe7dcdcb7b38ef Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:08:37 -0700
Subject: [PATCH 11/15] Add assertion to check package version in
 test_sl_forecast.py

---
 tests/test_sl_forecast.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 342383c..423fef0 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -11,3 +11,5 @@ class TestSLForecast:
     @pytest.fixture
     def test_version(self):
         from sl_forecast import __version__
+
+        assert __version__ is not None

From 5b0b5ddc6adcec094929e2c2e469f492d8368d31 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:11:45 -0700
Subject: [PATCH 12/15] Add setup and teardown methods to TestSLForecast class

---
 tests/test_sl_forecast.py | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 423fef0..28d8357 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -8,8 +8,15 @@
 class TestSLForecast:
     """Tests for `sl_forecast` package."""
 
-    @pytest.fixture
+    def setup_class(cls):
+        """Setup test fixtures, if any."""
+        pass
+
     def test_version(self):
         from sl_forecast import __version__
 
         assert __version__ is not None
+
+    def teardown_class(cls):
+        """Teardown test fixtures, if any."""
+        pass

From 6965ad5db146f3b6bf4f742425e29d151596fc50 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:13:14 -0700
Subject: [PATCH 13/15] Refactor TestSLForecast class to use setup_method and
 remove teardown_class

---
 tests/test_sl_forecast.py | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 28d8357..0753d64 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -5,10 +5,10 @@
 import pytest
 
 
-class TestSLForecast:
+class TestSLForecast(object):
     """Tests for `sl_forecast` package."""
 
-    def setup_class(cls):
+    def setup_method(self):
         """Setup test fixtures, if any."""
         pass
 
@@ -16,7 +16,3 @@ def test_version(self):
         from sl_forecast import __version__
 
         assert __version__ is not None
-
-    def teardown_class(cls):
-        """Teardown test fixtures, if any."""
-        pass

From 315d88cc1fee9fe625efd5d30226b19b0794b4ef Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:14:14 -0700
Subject: [PATCH 14/15] Remove unused import statement from test_sl_forecast.py

---
 tests/test_sl_forecast.py | 2 --
 1 file changed, 2 deletions(-)

diff --git a/tests/test_sl_forecast.py b/tests/test_sl_forecast.py
index 0753d64..07a1ef2 100644
--- a/tests/test_sl_forecast.py
+++ b/tests/test_sl_forecast.py
@@ -2,8 +2,6 @@
 
 """Tests for `sl_forecast` package."""
 
-import pytest
-
 
 class TestSLForecast(object):
     """Tests for `sl_forecast` package."""

From 62157e54d3dd5d9b68b05fb89d1c0a7c22dad7b3 Mon Sep 17 00:00:00 2001
From: Anowar Shajib <ajshajib@uchicago.edu>
Date: Mon, 18 Nov 2024 12:17:14 -0700
Subject: [PATCH 15/15] Remove outdated badge images from README.rst

---
 README.rst | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/README.rst b/README.rst
index b596b19..8726372 100644
--- a/README.rst
+++ b/README.rst
@@ -3,11 +3,8 @@ SL Forecast
 ===========
 
 
-.. image:: https://img.shields.io/pypi/v/sl_forecast.svg
-        :target: https://pypi.python.org/pypi/sl_forecast
-
-.. image:: https://img.shields.io/travis/audreyr/sl_forecast.svg
-        :target: https://travis-ci.com/audreyr/sl_forecast
+.. .. image:: https://img.shields.io/pypi/v/sl_forecast.svg
+..         :target: https://pypi.python.org/pypi/sl_forecast
 
 .. image:: https://readthedocs.org/projects/sl-forecast/badge/?version=latest
         :target: https://sl-forecast.readthedocs.io/en/latest/?version=latest