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getFiringPatterns.php
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<?php
include ("permission_check.php");
$research = $_REQUEST['research'];
// Define all the necessary classes needed for the application
require_once('class/class.type.php');
require_once('class/class.property.php');
require_once('class/class.firingpattern.php');
require_once('class/class.firingpatternrel.php');
require_once('class/class.evidencepropertyyperel.php');
require_once('class/class.temporary_result_neurons.php');
define('ORANGE', '#FF8C00');
define('BLUE', '#0000FF');
define('BROWN', '#7A5230');
define('GRAY', '#808080');
define('WHITE', '#FFFFFF');
// check for link
/*
* $id - Type id
* $img - img path
* $key - DG_Smo For Type SMo of DG
* $color - red/blue or violet
* */
function getUrlForLink($id,$img,$key,$count1)
{
$url = $img;
if($count1 != NULL)
{
if($img != NULL)
{
$url ='<a style="text-decoration:none" href="property_page_fp.php?id_neuron='.$id.'¶meter='.$key.'&count='.$count1.'&page=1" target="_blank">'.$img.'</a>';
}
}
return ($url);
}
if(!isset($_GET['page'])) $page=1;
else $page = $_GET['page'];
//page=1&rows=5&sidx=1&sord=asc
// get how many rows we want to have into the grid - rowNum parameter in the grid
if(!isset($_GET['rows'])) $limit=175;
else $limit = $_GET['rows'];
// get index row - i.e. user click to sort. At first time sortname parameter -
// after that the index from colModel
if(!isset($_GET['sidx'])) $sidx=1;
else $sidx = $_GET['sidx'];
// sorting order - at first time sortorder
if(!isset($_GET['sord'])) $sord="asc";
else $sord = $_GET['sord'];
// if we not pass at first time index use the first column for the index or what you want
if(!$sidx) $sidx =1;
$type = new type($class_type);
$research = $_REQUEST['research'];
$table = $_REQUEST['table_result'];
if (isset($research)) // From page of search; retrieve the id from search_table (temporary) -----------------------
{
$table_result = $_REQUEST['table_result'];
$temporary_result_neurons = new temporary_result_neurons();
$temporary_result_neurons -> setName_table($table_result);
$temporary_result_neurons -> retrieve_id_array();
$n_id_res = $temporary_result_neurons -> getN_id();
$number_type = 0;
for ($i2=0; $i2<$n_id_res; $i2++)
{
$id2 = $temporary_result_neurons -> getID_array($i2); // Retrieve each ID corresponding to the id Array
if (strpos($id2, '0_') == 1);
else
{
$type -> retrive_by_id($id2); // For each Id retrieve the type characteristics
$status = $type -> getStatus(); // Retrieve the status for each id
if ($status == 'active')
{
$id_search[$number_type] = $id2;
$position_search[$number_type] = $type -> getPosition();
$number_type = $number_type + 1;
}
}
} // END $i2
array_multisort($position_search, $id_search);
// sort($id_search);
}
else // not from search page --------------
{
if($_GET['_search']=='false') // Condition to check ifthe
{
$type -> retrive_id();
$number_type = $type->getNumber_type();
}
else{
//Retrieve types by Search conditions
//echo "Search ".$_GET['_search'];
/* echo "Search Field : ".$_GET['searchField']; // – the name of the field defined in colModel
echo "Search String : ".$_GET['searchString']; // – the string typed in the search field
echo "Search Operator : ".$_GET['searchOper']; //– the operator choosen in the search field (ex. equal, greater than, …) */
}
}
$type -> retrieve_id_by_subregion('DG');
$nDG = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA3');
$nCA3 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA2');
$nCA2 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA1');
$nCA1 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('Sub');
$nSub = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('EC');
$nEC = $type->getNumber_subregion_type();
$property = new property($class_property);
$evidencepropertyyperel = new evidencepropertyyperel($class_evidence_property_type_rel);
$firingpattern = new firingpattern($class_firing_pattern);
$firingpatternrel = new firingpatternrel($class_firing_pattern_rel);
//$hippo_select = $_SESSION['hippo_select'];
$count = $number_type;
//echo "The number of elements are ".$count." and the limit is ".$limit;
if($count <= $limit)
$limit = $count;
// calculate the total pages for the query
if( $count > 0 && $limit > 0) {
$total_pages = ceil($count/$limit);
} else {
$total_pages = 0;
}
// if for some reasons the requested page is greater than the total
// set the requested page to total page
if ($page > $total_pages)
$page=$total_pages;
// calculate the starting position of the rows
$start = $limit*$page - $limit;
// if for some reasons start position is negative set it to 0
// typical case is that the user type 0 for the requested page
if($start <0)
$start = 0;
$n_DG = 0;
$n_CA3 = 0;
$n_CA2 = 0;
$n_CA1 = 0;
$n_SUB = 0;
$n_EC = 0;
//header("Content-type: application/json;charset=utf-8");
$responce = (object) array('page' => $page, 'total' => $total_pages, 'records' =>$count, 'rows' => "");
$responce->page = $page;
$responce->total = $total_pages;
$responce->records = $count;
if($research!="1")
{
//$type -> retieve_ordered_List($start,$limit);
$type -> retrive_id();
$number_type = $type->getNumber_type();
}
//$number_type=$number_type+6;
$neuron = array("DG"=>'DG('.$nDG.')',"CA3"=>'CA3('.$nCA3.')',"CA3c"=>'CA3('.$nCA3.')',"CA2"=>'CA2('.$nCA2.')',"CA1"=>'CA1('.$nCA1.')',"Sub"=>'Sub('.$nSub.')',"EC"=>'EC('.$nEC.')');
//$neuron = array("DG"=>'DG(36)',"CA3"=>'CA3(35)',"CA3c"=>'CA3(35)',"CA2"=>'CA2(5)',"CA1"=>'CA1(60)',"Sub"=>'Sub(7)',"EC"=>'EC(33)');
$neuronColor = array("DG"=>'#770000',"CA3"=>'#C08181',"CA3c"=>'#C08181',"CA2"=>'#FFCC00',"CA1"=>'#FF6103',"Sub"=>'#FFCC33',"EC"=>'#336633');
//$prev_subregion="NONE";
$n_firing = 24;
for ($i=0; $i<$number_type; $i++) //$number_type // Here he determines the number of active neuron types to print each row in the data table
{
$hippo = array("ASP."=>NULL, "ASP.ASP."=>NULL, "ASP.NASP"=>NULL, "ASP.SLN"=>NULL, "D."=>NULL, "D.ASP."=>NULL, "D.RASP.NASP"=>NULL, "D.NASP."=>NULL, "D.PSTUT"=>NULL, "D.TSWB.NASP"=>NULL, "RASP."=>NULL, "RASP.ASP."=>NULL, "RASP.NASP"=>NULL, "RASP.SLN"=>NULL, "NASP"=>NULL, "PSTUT"=>NULL, "PSWB"=>NULL, "TSTUT."=>NULL, "TSTUT.ASP."=>NULL, "TSTUT.NASP"=>NULL, "TSTUT.PSTUT"=>NULL, "TSTUT.SLN"=>NULL, "TSWB.NASP"=>NULL, "TSWB.SLN"=>NULL, "-"=>NULL);
$hippo_color = array("ASP."=>NULL, "ASP.ASP."=>NULL, "ASP.NASP"=>NULL, "ASP.SLN"=>NULL, "D."=>NULL, "D.ASP."=>NULL, "D.RASP.NASP"=>NULL, "D.NASP"=>NULL, "D.PSTUT"=>NULL, "D.TSWB.NASP"=>NULL, "RASP."=>NULL, "RASP.ASP."=>NULL, "RASP.NASP"=>NULL, "RASP.SLN"=>NULL, "NASP"=>NULL, "PSTUT"=>NULL, "PSWB"=>NULL, "TSTUT."=>NULL, "TSTUT.ASP."=>NULL, "TSTUT.NASP"=>NULL, "TSTUT.PSTUT"=>NULL, "TSTUT.SLN"=>NULL, "TSWB.NASP"=>NULL, "TSWB.SLN"=>NULL, "-"=>NULL);
$hippo_count = array("ASP."=>NULL, "ASP.ASP."=>NULL, "ASP.NASP"=>NULL, "ASP.SLN"=>NULL, "D."=>NULL, "D.ASP."=>NULL, "D.RASP.NASP"=>NULL, "D.NASP"=>NULL, "D.PSTUT"=>NULL, "D.TSWB.NASP"=>NULL, "RASP."=>NULL, "RASP.ASP."=>NULL, "RASP.NASP"=>NULL, "RASP.SLN"=>NULL, "NASP"=>NULL, "PSTUT"=>NULL, "PSWB"=>NULL, "TSTUT."=>NULL, "TSTUT.ASP."=>NULL, "TSTUT.NASP"=>NULL, "TSTUT.PSTUT"=>NULL, "TSTUT.SLN"=>NULL, "TSWB.NASP"=>NULL, "TSWB.SLN"=>NULL, "-"=>NULL);
$name_firing = array("0"=>"ASP.", "1"=>"ASP.ASP.", "2"=>"ASP.NASP", "3"=>"ASP.SLN", "4"=>"D.", "5"=>"D.ASP.", "6"=>"D.RASP.NASP", "7"=>"D.NASP", "8"=>"D.PSTUT", "9"=>"D.TSWB.NASP", "10"=>"RASP.", "11"=>"RASP.ASP.", "12"=>"RASP.NASP", "13"=>"RASP.SLN", "14"=>"NASP", "15"=>"PSTUT", "16"=>"PSWB", "17"=>"TSTUT.", "18"=>"TSTUT.ASP.", "19"=>"TSTUT.NASP", "20"=>"TSTUT.PSTUT", "21"=>"TSTUT.SLN", "22"=>"TSWB.NASP", "23"=>"TSWB.SLN", "24"=>"-");
$soma_location = array("DG:SMo"=>0, "DG:SMi"=>1, "DG:SG"=>2, "DG:H"=>3,
"CA3:SLM"=>0, "CA3:SR"=>1, "CA3:SL"=>2, "CA3:SP"=>3, "CA3:SO"=>4,
"CA2:SLM"=>0, "CA2:SR"=>1, "CA2:SP"=>2, "CA2:SO"=>3,
"CA1:SLM"=>0, "CA1:SR"=>1, "CA1:SP"=>2, "CA1:SO"=>3,
"SUB:SM"=>0, "SUB:SP"=>1, "SUB:PL"=>2,
"EC:I"=>0, "EC:II"=>1, "EC:III"=>2, "EC:IV"=>3, "EC:V"=>4, "EC:VI"=>5);
if(isset($id_search))
{
$id = $id_search[$i];
}
else
$id = $type->getID_array($i);
$type -> retrive_by_id($id); // Retrieve id
$nickname = $type->getNickname(); // Retrieve nick name
$position = $type->getPosition(); // Retrieve the position
$subregion = $type -> getSubregion(); // Retrieve the sub region
$excit_inhib =$type-> getExcit_Inhib(); //Retrieve the Excit or Inhib
$evidencepropertyyperel -> retrive_Property_id_by_Type_id($id); // Retrieve distinct Property ids for each type id
$n_property = $evidencepropertyyperel -> getN_Property_id(); // Count of the number of properties for a given type id
for($j=0 ; $j<$n_property ; $j++) //To obtain soma location
{
$prop_id = $evidencepropertyyperel -> getProperty_id_array($j);
$property->retrive_by_id($prop_id);
$part1 = $property->getPart();
$rel1 = $property->getRel();
if(($property->getPart() == 'somata') && ($property->getRel() == 'in'))
{
$object_value = $property->getVal();
$soma_position = $soma_location["$object_value"];
}
}
//$firing -> retrive_by_id($id);
//$n_type = $firing->getN_Type_id();
$firingpatternrel->retrieve_by_typeId($id);
$n_firingpatternid = $firingpatternrel->getN_firing_pattern_ID();
//echo $n_firingpatternid;
for($j=0 ; $j<$n_firingpatternid ; $j++)
{
$pattern_id = $firingpatternrel->getPattern_array($j);
// echo $pattern_id;
// echo(" ");
//echo '-';
//echo $pattern[$j];
//echo " ";
$firingpattern->retrieve_by_id($pattern_id);
$pattern_name = $firingpattern->getOverall_fp();
//echo $pattern_name;
//echo '-';
$hippo_count[$pattern_name]+=1;
//print $hippo_count[$pattern_name];
//$hippo_count[$pattern[$j]]+=1;
//print $hippo_count[$pattern_name];
}
for($j=0; $j<=$n_firing ; $j++)
{
if($hippo_count[$name_firing[$j]] == 1)
{
$bgColor = ORANGE;
$hippo[$name_firing[$j]] = "<div style='background-color:".$bgColor."'><font color='white'> 1</font></div>";
$hippo_color[$name_firing[$j]] = $hippo_count[$name_firing[$j]];
}
elseif($hippo_count[$name_firing[$j]] == 2)
{
$bgColor = BLUE;
$hippo[$name_firing[$j]] = "<div style='background-color:" .$bgColor. "'><font color='white'> 2</font></div>";
$hippo_color[$name_firing[$j]] = $hippo_count[$name_firing[$j]];
}
elseif($hippo_count[$name_firing[$j]] == 3)
{
$bgColor = BROWN;
$hippo[$name_firing[$j]] = "<div style='background-color:" .$bgColor. "'><font color='white'> 3</font></div>";
$hippo_color[$name_firing[$j]] = $hippo_count[$name_firing[$j]];
}
elseif($hippo_count[$name_firing[$j]] == 4)
{
$bgColor = GRAY;
$hippo[$name_firing[$j]] = "<div style='background-color:" .$bgColor. "'><font color='white'> 4</font></div>";
$hippo_color[$name_firing[$j]] = $hippo_count[$name_firing[$j]];
}
/*else
{
$bgColor = WHITE;
$hippo[$name_firing[$j]] = "<div style='background-color:" .$bgColor. "'> </div>";
$hippo_color[$name_firing[$j]] = NULL;
}*/
}
if ($excit_inhib == 'e')
$fontColor='#339900';
elseif ($excit_inhib == 'i')
$fontColor='#CC0000';
if ($type->get_type_subtype($id) == 'subtype')
{
$fontColor='#000099';
if ($excit_inhib == 'i')
$fontColor='#CC5500';
$rows[$i]['cell'] = array('<span style="color:'.$neuronColor[$subregion].'"><strong>'.$neuron[$subregion].'</strong></span>'," ".'<a href="neuron_page.php?id='.$id.'" target="blank" title="'.$nickname.'"'.$type->getName().'"><font color="'.$fontColor.'">'.$nickname.'</font></a>',
getUrlForLink($id,$hippo['ASP.'],$name_firing['0'],$hippo_color['ASP.']),
getUrlForLink($id,$hippo['ASP.ASP.'],$name_firing['1'],$hippo_color['ASP.ASP.']),
getUrlForLink($id,$hippo['ASP.NASP'],$name_firing['2'],$hippo_color['ASP.NASP']),
getUrlForLink($id,$hippo['ASP.SLN'],$name_firing['3'],$hippo_color['ASP.SLN']),
getUrlForLink($id,$hippo['D.'],$name_firing['4'],$hippo_color['D.']),
getUrlForLink($id,$hippo['D.ASP.'],$name_firing['5'],$hippo_color['D.ASP.']),
getUrlForLink($id,$hippo['D.RASP.NASP'],$name_firing['6'],$hippo_color['D.RASP.NASP']),
getUrlForLink($id,$hippo['D.NASP'],$name_firing['7'],$hippo_color['D.NASP']),
getUrlForLink($id,$hippo['D.PSTUT'],$name_firing['8'],$hippo_color['D.PSTUT']),
getUrlForLink($id,$hippo['D.TSWB.NASP'],$name_firing['9'],$hippo_color['D.TSWB.NASP']),
getUrlForLink($id,$hippo['RASP.'],$name_firing['10'],$hippo_color['RASP.']),
getUrlForLink($id,$hippo['RASP.ASP.'],$name_firing['11'],$hippo_color['RASP.ASP.']),
getUrlForLink($id,$hippo['RASP.NASP'],$name_firing['12'],$hippo_color['RASP.NASP']),
getUrlForLink($id,$hippo['RASP.SLN'],$name_firing['13'],$hippo_color['RASP.SLN']),
getUrlForLink($id,$hippo['NASP'],$name_firing['14'],$hippo_color['NASP']),
getUrlForLink($id,$hippo['PSTUT'],$name_firing['15'],$hippo_color['PSTUT']),
getUrlForLink($id,$hippo['PSWB'],$name_firing['16'],$hippo_color['PSWB']),
getUrlForLink($id,$hippo['TSTUT.'],$name_firing['17'],$hippo_color['TSTUT.']),
getUrlForLink($id,$hippo['TSTUT.ASP..'],$name_firing['18'],$hippo_color['TSTUT.ASP.']),
getUrlForLink($id,$hippo['TSTUT.NASP'],$name_firing['19'],$hippo_color['TSTUT.NASP']),
getUrlForLink($id,$hippo['TSTUT.PSTUT'],$name_firing['20'],$hippo_color['TSTUT.PSTUT']),
getUrlForLink($id,$hippo['TSTUT.SLN'],$name_firing['21'],$hippo_color['TSTUT.SLN']),
getUrlForLink($id,$hippo['TSWB.NASP'],$name_firing['22'],$hippo_color['TSWB.NASP']),
getUrlForLink($id,$hippo['TSWB.SLN'],$name_firing['23'],$hippo_color['TSWB.SLN']),
getUrlForLink($id,$hippo['-'],$name_firing['24'],$hippo_color['-'])
);
}
else
{
$rows[$i]['cell'] = array('<span style="color:'.$neuronColor[$subregion].'"><strong>'.$neuron[$subregion].'</strong></span>','<a href="neuron_page.php?id='.$id.'" target="blank" title="'.$nickname.'"'.$type->getName().'"><font color="'.$fontColor.'">'.$nickname.'</font></a>',
getUrlForLink($id,$hippo['ASP.'],$name_firing['0'],$hippo_color['ASP.']),
getUrlForLink($id,$hippo['ASP.ASP.'],$name_firing['1'],$hippo_color['ASP.ASP.']),
getUrlForLink($id,$hippo['ASP.NASP'],$name_firing['2'],$hippo_color['ASP.NASP']),
getUrlForLink($id,$hippo['ASP.SLN'],$name_firing['3'],$hippo_color['ASP.SLN']),
getUrlForLink($id,$hippo['D.'],$name_firing['4'],$hippo_color['D.']),
getUrlForLink($id,$hippo['D.ASP.'],$name_firing['5'],$hippo_color['D.ASP.']),
getUrlForLink($id,$hippo['D.RASP.NASP'],$name_firing['6'],$hippo_color['D.RASP.NASP']),
getUrlForLink($id,$hippo['D.NASP'],$name_firing['7'],$hippo_color['D.NASP']),
getUrlForLink($id,$hippo['D.PSTUT'],$name_firing['8'],$hippo_color['D.PSTUT']),
getUrlForLink($id,$hippo['D.TSWB.NASP'],$name_firing['9'],$hippo_color['D.TSWB.NASP']),
getUrlForLink($id,$hippo['RASP.'],$name_firing['10'],$hippo_color['RASP.']),
getUrlForLink($id,$hippo['RASP.ASP.'],$name_firing['11'],$hippo_color['RASP.ASP.']),
getUrlForLink($id,$hippo['RASP.NASP'],$name_firing['12'],$hippo_color['RASP.NASP']),
getUrlForLink($id,$hippo['RASP.SLN'],$name_firing['13'],$hippo_color['RASP.SLN']),
getUrlForLink($id,$hippo['NASP'],$name_firing['14'],$hippo_color['NASP']),
getUrlForLink($id,$hippo['PSTUT'],$name_firing['15'],$hippo_color['PSTUT']),
getUrlForLink($id,$hippo['PSWB'],$name_firing['16'],$hippo_color['PSWB']),
getUrlForLink($id,$hippo['TSTUT.'],$name_firing['17'],$hippo_color['TSTUT.']),
getUrlForLink($id,$hippo['TSTUT.ASP..'],$name_firing['18'],$hippo_color['TSTUT.ASP.']),
getUrlForLink($id,$hippo['TSTUT.NASP'],$name_firing['19'],$hippo_color['TSTUT.NASP']),
getUrlForLink($id,$hippo['TSTUT.PSTUT'],$name_firing['20'],$hippo_color['TSTUT.PSTUT']),
getUrlForLink($id,$hippo['TSTUT.SLN'],$name_firing['21'],$hippo_color['TSTUT.SLN']),
getUrlForLink($id,$hippo['TSWB.NASP'],$name_firing['22'],$hippo_color['TSWB.NASP']),
getUrlForLink($id,$hippo['TSWB.SLN'],$name_firing['23'],$hippo_color['TSWB.SLN']),
getUrlForLink($id,$hippo['-'],$name_firing['24'],$hippo_color['-'])
);
}
$responce->rows = $rows;
}
//echo json_encode($responce);
?>