-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathTspectrum_T11.C
386 lines (302 loc) · 11 KB
/
Tspectrum_T11.C
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
#include "TCanvas.h"
#include "TMath.h"
#include "TGraph.h"
#include "TH1.h"
#include "TF1.h"
#include "TRandom.h"
#include "TSpectrum.h"
#include "TVirtualFitter.h"
#include "unistd.h"
#include "TNamed.h"
#include "TAttLine.h"
#include "TAttFill.h"
#include "TAttMarker.h"
#include "TVectorFfwd.h"
#include "TVectorDfwd.h"
Int_t npeaks = 3;
Double_t fpeaks(Double_t *x, Double_t *par) {
Double_t result = par[0] + par[1]*x[0];
for (Int_t p=0;p<npeaks;p++) {
Double_t norm = par[3*p+2];
Double_t mean = par[3*p+3];
Double_t sigma = par[3*p+4];
result += norm*TMath::Gaus(x[0],mean,sigma);
}
return result;
}
void Tspectrum_T11()
{
Double_t StdDev;
Double_t Mean;
TString index_s;
TString index_r;
TString filename1 ="ana/output02303.root";
TString object = "h_pad_amp_per_row_cut_col";
TFile *f = new TFile(filename1);
TCanvas *c2 = new TCanvas("c2","A Graph ",200,10,700,500);
TPad *pad = new TPad("pad","",0,0,1,1);
pad->Draw();
pad->cd();
TH1D* hdummy= new TH1D ("hdummy", "peaks graph T11", 1, 0., 576.);
hdummy ->SetStats(kFALSE); //gets rid of the box
hdummy ->Draw();
hdummy ->SetXTitle("Pad rows");
hdummy->GetYaxis()->SetTitleOffset(1.5);
hdummy ->SetYTitle("Entries");
hdummy ->GetYaxis() ->SetRangeUser(0.,10000.);
double maxpeak=0.;
TPad *overlay = new TPad("overlay","",0,0,1,1);
overlay->SetFillStyle(4000);
overlay->SetFillColor(0);
overlay->SetFrameFillStyle(4000);
overlay->Draw();
auto legend = new TLegend(0.1,0.7,0.48,0.9);
for(Int_t i=15; i<22; i++){
index_r.Form("%i",i);
// TString filename = object+index_r;
//filename = TString::Format("%s%02i",object.Data(),i);
// filename = TString::Format("h_pad_amp_per_row_cut_col%02i",i);
TString filename = object+ TString::Format("%02i",i);
TCanvas *c1 = new TCanvas("c1"+index_r,"Profile histogram example",1200,1000);
//c1 ->Draw();
c1 -> Iconify();
TH2D *hfix = (TH2D*) f->FindObjectAny(filename);
cout<<filename<<endl;
Int_t NX = hfix-> GetNbinsX();
cout << "number of bins " << NX <<endl;
vector<double> x, y;
//hfix->GetXaxis()->SetRangeUser(0,400);
if ( i <21){
for (Int_t r=0; r < NX ;r++){
index_s.Form("%i",r);
TH1D *py = hfix->ProjectionY("py"+index_s+"col"+index_r,r,r,"d");
py ->SetFillColor(kBlue-2);
StdDev = py ->GetStdDev();
Mean = py ->GetMean();
if(StdDev < 500 && StdDev !=0 && py ->GetEntries()> 50 ){
//Use TSpectrum to find the peak candidates
x.push_back(r);
y.push_back(Mean);
//printf( " %f %f \n" , x.back(), y.back());
TSpectrum *s = new TSpectrum(2);
Int_t nfound = s->Search(py,20,"",0.1);
cout << "Found "<< nfound << " candidate peaks to fit." << endl;
Double_t *xpeaks = s->GetPositionX();
Double_t *ypeaks = s->GetPositionY();
//cout << "xpeaks " << xpeaks <<endl;
cout << "Now fitting: Be patient.\n";
TF1 *f1 = new TF1("f1",fpeaks,0,1000,2+3*nfound);
Double_t par[2000];
par[0] = 0.1;
par[1] = 1.;
for (int p=0;p<nfound;p++) {
Double_t xp = xpeaks[p];
Double_t yp = ypeaks[p];
par[3*p+2] = yp;
par[3*p+3] = xp;
par[3*p+4] = 50;
}
// TVirtualFitter::Fitter(hfix,10+3*nfound);
f1->SetParameters(par);
f1->FixParameter(1,0);
//cout << "parameters " << f1->GetParameter(0) << ", " << f1->GetParameter(1) << ", " << f1->GetParameter(2) << ", " << f1->GetParameter(3) << ", " << f1->GetParameter(4) << endl;
f1->SetNpx(1000);
py ->Draw();
py->Fit("f1");
cout << "Now fitting: Be patient.\n";
// cout<<index_s<<endl;
//cout<<StdDev<<endl;
c1 ->Update();
// sleep(1);
} else if(py ->GetEntries()>1000 && StdDev != 0){
cout << r << " : StdDev = " << StdDev << " py ->GetEntries() = " << py ->GetEntries() << endl;
py ->Draw();
c1 ->Update();
//sleep(10);
}
}
}
else{
for (Int_t r=300; r < NX ;r++){
index_s.Form("%i",r);
TH1D *py = hfix->ProjectionY("py"+index_s+"col"+index_r,r,r,"d");
py ->SetFillColor(kBlue-2);
StdDev = py ->GetStdDev();
Mean = py ->GetMean();
if(StdDev < 500 && StdDev !=0 && py ->GetEntries()> 50 ){
//Use TSpectrum to find the peak candidates
x.push_back(r);
y.push_back(Mean);
printf( " %f %f \n" , x.back(), y.back());
TSpectrum *s = new TSpectrum(2);
Int_t nfound = s->Search(py,20,"",0.1);
cout << "Found "<< nfound << " candidate peaks to fit." << endl;
Double_t *xpeaks = s->GetPositionX();
Double_t *ypeaks = s->GetPositionY();
//cout << "xpeaks " << xpeaks <<endl;
cout << "Now fitting: Be patient.\n";
TF1 *f1 = new TF1("f1",fpeaks,0,1000,2+3*nfound);
Double_t par[2000];
par[0] = 0.1;
par[1] = 1.;
for (int p=0;p<nfound;p++) {
Double_t xp = xpeaks[p];
Double_t yp = ypeaks[p];
par[3*p+2] = yp;
par[3*p+3] = xp;
par[3*p+4] = 50;
}
// TVirtualFitter::Fitter(hfix,10+3*nfound);
f1->SetParameters(par);
f1->FixParameter(1,0);
//cout << "parameters " << f1->GetParameter(0) << ", " << f1->GetParameter(1) << ", " << f1->GetParameter(2) << ", " << f1->GetParameter(3) << ", " << f1->GetParameter(4) << endl;
f1->SetNpx(1000);
py ->Draw();
py->Fit("f1");
cout << "Now fitting: Be patient.\n";
// cout<<index_s<<endl;
//cout<<StdDev<<endl;
c1 ->Update();
//sleep(1);
}
else if(py ->GetEntries()>1000 && StdDev != 0){
cout << r << " : StdDev = " << StdDev << " py ->GetEntries() = " << py ->GetEntries() << endl;
py ->Draw();
c1 ->Update();
//sleep(10);
}
}
}
// TH1D* pad_peak_per_row;
// pad_peak_per_row = new TH1D();
// pad_peak_per_row -> Fill (x[n],y[n]);
//new TCanvas;
// TH1* h1 = new TH1D("h1", "peaks", 100, 0.0, 4.0);
//h1 ->Fill(x.data(),y.data());
// TCanvas *c2 = new TCanvas("c2","A Graph ",200,10,700,500);
//c2->SetFillColor(42);
//c2->SetGrid();
TGraph *gr = new TGraph(x.size(),x.data(),y.data());
gr ->SetName("col" +index_r);
gr->SetLineColor(i-13);
gr->SetLineWidth(1);
gr->SetMarkerColor(i-13);
gr->SetMarkerStyle(21);
gr->SetTitle("col" +index_r);
gr->GetXaxis()->SetTitle("pad rows");
gr->GetYaxis()->SetTitle("amp");
//maxpeak=maxpeak>*std::max_element(y.begin(),y.end())?maxpeak:*std::max_element(y.begin(),y.end());
//c2 ->cd();
//gr->Draw("CP SAME");
//c2 ->Update();
TH1* h1 = new TH1D("h1 col " +index_r, "peaks", NX, -0.5, NX-0.5);
// h1 ->Fill(y.data());
auto nPoints = gr->GetN();
//cout << "number of Points is: " << nPoints << endl;
for(int i=0; i < nPoints; ++i) {
double x,y;
gr->GetPoint(i, x, y);
cout << x << y <<endl;
h1->Fill(x,y);
}
// h1 ->Draw();
TSpectrum *s = new TSpectrum(9);
Int_t nfound = s->Search(h1,3,"",0.05);
cout << "Found "<< nfound << " candidate peaks to fit." << endl;
Double_t *x1peaks = s->GetPositionX();
Double_t *y1peaks = s->GetPositionY();
cout << "x1peaks " << x1peaks <<endl;
cout << "Now fitting: Be patient.\n";
TF1 *f2 = new TF1("f2",fpeaks,0,1000,2+3*nfound);
Double_t par[2000];
par[0] = 0.1;
par[1] = 1.;
for (int p=0;p<nfound;p++) {
Double_t x1p = x1peaks[p];
Double_t y1p = y1peaks[p];
par[3*p+2] = y1p;
par[3*p+3] = x1p;
par[3*p+4] = 2;
}
c2 ->cd();
// new TCanvas;
f2->SetParameters(par);
f2->FixParameter(1,0);
f2->FixParameter(0,0);
//cout << "parameters " << f1->GetParameter(0) << ", " << f1->GetParameter(1) << ", " << f1->GetParameter(2) << ", " << f1->GetParameter(3) << ", " << f1->GetParameter(4) << endl;
f2->SetNpx(1000);
//h1 ->Draw ();
const Int_t n = 22;
Float_t x1[n] = {5, 7.5, 10.5, 13.675, 16.85, 23.2, 29.55, 35.9, 42.25, 48.6, 54.95, 61.3, 67.65, 74, 137.5, 201, 264.5, 328, 391.5, 455, 518.5, 582};
//{50, 75, 105, 136.75, 168.5, 232, 295.5, 359, 422.5, 486, 549.5, 613, 676.5, 740, 1375, 2010, 2645, 3280, 3915, 4550, 5185, 5820};
Float_t y1[n] = {256, 748.8, 15264, 26304, 29184, 31040, 28800, 28224, 22400, 19520, 14512, 12704.0127040127, 10672.0533602668, 8992.27876064158, 2527.36871581154, 1540.34193487162, 1162.17224599313, 814.291802203125, 779.437756654327, 500.794452983734, 268.837866099438, 168.17471925432};
//{168.17471925432, 268.83786609943, 500.794452983734, 779.437756654327, 814.291802203125, 1162.17224599313, 1540.34193487162, 2527.36871581154, 8992.27876064158, 10672.0533602668, 12704.0127040127, 14512, 19520, 22400, 28224, 28800, 31040, 29184, 26304, 15264, 748.8, 256};
// {256, 748.8, 15264, 26304, 29184, 31040, 28800, 28224, 22400, 19520, 14512, 12704.0127040127, 10672.0533602668, 8992.27876064158, 2527.36871581154, 1540.34193487162, 1162.17224599313, 814.291802203125, 779.437756654327, 500.794452983734, 268.837866099438, 168.17471925432};
Float_t ex[n] = {.05,.1,.07,.07,.04,.05,.06,.07,.08,.05};
Float_t ey[n] = {.8,.7,.6,.5,.4,.4,.5,.6,.7,.8};
Float_t x2[n];
Float_t y2[n];
double c = -1;
double d = 582;
double b = 0.35;
for(int i=0;i<n;i++){
x2[i] = (c*x1[i])+ d;
y2[i] = b*y1[i];
//return x2;
}
pad->cd();
h1->Draw("LP same");
overlay->cd();
TGraphErrors *gr1 = new TGraphErrors(n,x2,y2,ex,ey);
gr1->SetTitle("TGraphErrors Example");
gr1->SetMarkerColor(4);
gr1->SetMarkerStyle(21);
gr1->SetLineColor(1);
gr1->SetLineWidth(4);
Double_t xmin = pad->GetUxmin();
Double_t ymin = 0;
Double_t xmax = pad->GetUxmax();
Double_t ymax = 12000;
TH1D *hframe = (TH1D*) overlay->DrawFrame(xmin,ymin,xmax,ymax);
hframe->GetXaxis()->SetLabelOffset(99);
hframe->GetYaxis()->SetLabelOffset(99);
gr1->Draw("SAME");
// h1 ->Draw("LP same");
//h1->Fit("f2");
// cout << "Now fitting: Be patient.\n";
// cout<<index_s<<endl;
//cout<<StdDev<<endl;
//c3 ->Update();
//h1 ->Fit ("f1","R");
//gr->Draw("CP SAME");
//gr->Draw();
//c2 ->Update();
//gr->Draw((i==0)?"ALP":"LP same");
// cout<<index_s<<endl;
//cout<<StdDev<<endl;
//c3 ->Update();
//h1 ->Fit ("f1","R");
//gr->Draw("CP SAME");
//gr->Draw();
//c2 ->Update();
TGaxis *axis = new TGaxis(xmax,ymin,xmax,ymax,ymin,ymax/b,510,"+l");
axis->SetLineColor(kRed);
axis->SetLabelColor(kRed);
axis->Draw();
axis->SetTitle("Intensity [a.u.]");
axis->SetTitleFont(hdummy->GetYaxis()->GetTitleFont());
axis->SetTitleSize(hdummy->GetYaxis()->GetTitleSize());
axis->SetTitleColor(kRed);
axis->SetTitleOffset(1.55);
axis->SetLabelFont(hdummy->GetYaxis()->GetLabelFont());
axis->SetLabelSize(hdummy->GetYaxis()->GetLabelSize());
axis->SetLabelOffset(0.07);
//gr->Draw((i==0)?"ALP":"LP same");
legend->SetHeader("Peaks","C"); // option "C" allows to center the header
legend->AddEntry(h1,"h1 col" +index_r,"f");
legend->AddEntry("gr","gr col"+index_r,"lep");
//c2->Update();
}
legend->Draw();
// hdummy ->GetYaxis() ->SetRangeUser(0.,maxpeak*1.1);
}