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 <span id="projectnumber">1.5.beta</span>
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<div class="title">3dImageViewer </div> </div>
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<div class="textblock"><p>Displays volume file as a voxel set by using QGLviewer.</p>
<p><b>Usage:</b> 3dImageViewer [OPTIONS] 1 [s]</p>
<p><b>Allowed</b> <b>options</b> <b>are</b> :</p>
<div class="fragment"><div class="line">Positionals:</div>
<div class="line"> 1 TEXT:FILE REQUIRED vol file (.vol, .longvol .p3d, .pgm3d and <span class="keywordflow">if</span> WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255.</div>
<div class="line"> s TEXT display a set of discrete points (.sdp)</div>
<div class="line"> </div>
<div class="line">Options:</div>
<div class="line"> -h,--help Print <span class="keyword">this</span> help message and exit</div>
<div class="line"> -i,--input TEXT:FILE REQUIRED vol file (.vol, .longvol .p3d, .pgm3d and <span class="keywordflow">if</span> WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255.</div>
<div class="line"> --grid draw slice images <span class="keyword">using</span> grid mode.</div>
<div class="line"> --intergrid draw slice images <span class="keyword">using</span> inter grid mode.</div>
<div class="line"> --emptyMode remove the <span class="keywordflow">default</span> boundingbox display.</div>
<div class="line"> --thresholdImage threshold the image to define binary shape</div>
<div class="line"> --thresholdMin INT=0 threshold min to define binary shape</div>
<div class="line"> --thresholdMax INT=255 threshold maw to define binary shape</div>
<div class="line"> --displaySDP TEXT display a set of discrete points (.sdp)</div>
<div class="line"> --SDPindex UINT x 3 specify the sdp index.</div>
<div class="line"> --SDPball FLOAT=0 use balls to display a set of discrete points (<span class="keywordflow">if</span> not set to 0 and used with displaySDP option).</div>
<div class="line"> --displayMesh TEXT display a Mesh given in OFF or OFS format.</div>
<div class="line"> --displayDigitalSurface display the digital surface instead of display all the set of voxels (used with thresholdImage or displaySDP options)</div>
<div class="line"> --colorizeCC colorize each Connected Components of the surface displayed by displayDigitalSurface option.</div>
<div class="line"> -c,--colorSDP UINT x 4 set the color discrete points: r g b a</div>
<div class="line"> --colorMesh UINT x 4 set the color of Mesh (given from displayMesh option) : r g b a</div>
<div class="line"> -x,--scaleX FLOAT=1 set the scale value in the X direction</div>
<div class="line"> -y,--scaleY FLOAT=1 set the scale value in the Y direction</div>
<div class="line"> -z,--scaleZ FLOAT=1 set the scale value in the Z direction</div>
<div class="line"> --rescaleInputMin INT=0 min value used to rescale the input intensity (to avoid basic cast into 8 bits image).</div>
<div class="line"> --rescaleInputMax INT=255 max value used to rescale the input intensity (to avoid basic cast into 8 bits image).</div>
<div class="line"> -t,--transparency UINT=? change the default transparency</div>
</div><!-- fragment --><p><b>Example:</b> With the image display you can also threshold the image and display a set of voxel: <br />
</p><div class="fragment"><div class="line">3dImageViewer $DGtal/examples/samples/lobster.vol --thresholdImage -m 180</div>
</div><!-- fragment --><p>You should obtain such a result:</p>
<div class="image">
<img src="res3dImageViewer.png" alt=""/>
<div class="caption">
resulting visualisation of 3d image with thresholded set of voxels.</div></div>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="3dImageViewer_8cpp_source.html">3dImageViewer.cpp</a> </dd></dl>
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