From b3d254f9bc35f4e336e2a3d738c544d40d9ddbea Mon Sep 17 00:00:00 2001 From: embruna Date: Thu, 11 Jul 2024 10:29:52 -0400 Subject: [PATCH] update of tag changes --- NEWS.md | 15 +- data/survey_clean/tag_changes.csv | 423 +- docs/tag_changes/tag_changes.Rmd | 136 +- docs/tag_changes/tag_changes.html | 6061 +++++++++++++++-------------- 4 files changed, 3532 insertions(+), 3103 deletions(-) diff --git a/NEWS.md b/NEWS.md index 741dc69..3b227d9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,17 @@ -# HDP file updates (organized by date) +# HDP file updates (organized by date beginning with the most recent changes) + + +## 11 July 2024 + +### Enhancement + +- uploaded pdfs of the original datasheets from the four plots in 1-ha fragments, two odf the plots in 10-ha fragments, and five of the plots in continuous forest. + +## 2 July 2024 + +### Enhancement + +- In July 2024 EB visited Camp 41 and conducted a quick visit to plot CF-2. Some of the original tags that were difficult to read or missing were replaced with new tags. All of the new numbers are noted in the "tag_changes" file. The page listing tag changes now includes a summary of the number and percentage of tags in each plot that have been changed. ## 24 July 2023 diff --git a/data/survey_clean/tag_changes.csv b/data/survey_clean/tag_changes.csv index 754bd1f..d4e7609 100644 --- a/data/survey_clean/tag_changes.csv +++ b/data/survey_clean/tag_changes.csv @@ -1,207 +1,216 @@ -plot_id,plot,ranch,habitat,bdffp_no,year,old_tag_no,new_tag_number,notes -FF-1,2107,dimona,one,2107,2002,229,269,NA -FF-1,2107,dimona,one,2107,2000,23,165,NA -FF-1,2107,dimona,one,2107,2006,287,326,NA -FF-1,2107,dimona,one,2107,2008,40,365,NA -FF-1,2107,dimona,one,2107,2000,67,245,NA -FF-2,2108,dimona,one,2108,2000,123,NA,NA -FF-2,2108,dimona,one,2108,2007,184,331,NA -FF-2,2108,dimona,one,2108,2006,217,278,NA -FF-2,2108,dimona,one,2108,2005,227,240,NA -FF-2,2108,dimona,one,2108,2006,262,229,NA -FF-2,2108,dimona,one,2108,2006,29,291,NA -FF-2,2108,dimona,one,2108,2000,41,NA,NA -FF-2,2108,dimona,one,2108,2000,64,NA,NA -FF-2,2108,dimona,one,2108,2006,C9 #69,NA,needs new number -FF-5,2206,dimona,ten,2206,2006,104,331,NA -FF-5,2206,dimona,ten,2206,2006,108,341,NA -FF-5,2206,dimona,ten,2206,2003,19,193,NA -FF-5,2206,dimona,ten,2206,2006,208,242,NA -FF-5,2206,dimona,ten,2206,2006,269,322,NA -FF-5,2206,dimona,ten,2206,2002,45,25,NA -FF-5,2206,dimona,ten,2206,2006,53,320,NA -FF-5,2206,dimona,ten,2206,2002,76,186,NA -CF-2,5750,esteio,forest,1501,2004,103,1395,NA -CF-2,5750,esteio,forest,1501,2004,104,989,NA -CF-2,5750,esteio,forest,1501,2004,104,1332,NA -CF-2,5750,esteio,forest,1501,2001,107,717,NA -CF-2,5750,esteio,forest,1501,2004,11,1305,NA -CF-2,5750,esteio,forest,1501,2004,111,1341,NA -CF-2,5750,esteio,forest,1501,2004,116,1306,NA -CF-2,5750,esteio,forest,1501,2004,12,1307,NA -CF-2,5750,esteio,forest,1501,2004,126,1130,NA -CF-2,5750,esteio,forest,1501,2004,128,1334,NA -CF-2,5750,esteio,forest,1501,2004,13,996,996: one in h7 and one in d7 -CF-2,5750,esteio,forest,1501,2006,1312,1416,NA -CF-2,5750,esteio,forest,1501,2006,1333,1404,NA -CF-2,5750,esteio,forest,1501,2006,1335,1414,NA -CF-2,5750,esteio,forest,1501,2006,1381,1391,NA -CF-2,5750,esteio,forest,1501,2004,15,977,NA -CF-2,5750,esteio,forest,1501,2004,16,893,NA -CF-2,5750,esteio,forest,1501,2000,160,673,NA -CF-2,5750,esteio,forest,1501,2004,17,1309,NA -CF-2,5750,esteio,forest,1501,2004,18,979,NA -CF-2,5750,esteio,forest,1501,2004,19,1321,NA -CF-2,5750,esteio,forest,1501,2004,2,956,NA -CF-2,5750,esteio,forest,1501,2004,20,995,NA -CF-2,5750,esteio,forest,1501,2004,21,973,NA -CF-2,5750,esteio,forest,1501,2004,22,1301,NA -CF-2,5750,esteio,forest,1501,2004,23,912,NA -CF-2,5750,esteio,forest,1501,2004,24,945,NA -CF-2,5750,esteio,forest,1501,2007,247,2066,NA -CF-2,5750,esteio,forest,1501,2004,25,930,NA -CF-2,5750,esteio,forest,1501,2004,26,957,NA -CF-2,5750,esteio,forest,1501,2004,27,955,NA -CF-2,5750,esteio,forest,1501,2004,28,874,NA -CF-2,5750,esteio,forest,1501,2004,3,998,NA 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-CF-2,5750,esteio,forest,1501,2004,52,1329,NA -CF-2,5750,esteio,forest,1501,2004,53,872,NA -CF-2,5750,esteio,forest,1501,2004,54,907,NA -CF-2,5750,esteio,forest,1501,2004,55,929,NA -CF-2,5750,esteio,forest,1501,2004,56,1392,NA -CF-2,5750,esteio,forest,1501,2006,564,1418,NA -CF-2,5750,esteio,forest,1501,2004,58,964,NA -CF-2,5750,esteio,forest,1501,2004,59,1311,NA -CF-2,5750,esteio,forest,1501,2004,6,1313,NA -CF-2,5750,esteio,forest,1501,2004,61,991,NA -CF-2,5750,esteio,forest,1501,2001,618,781,NA -CF-2,5750,esteio,forest,1501,2004,62,969,NA -CF-2,5750,esteio,forest,1501,2004,64,1000,NA -CF-2,5750,esteio,forest,1501,2004,66,990,NA -CF-2,5750,esteio,forest,1501,2004,67,992,NA -CF-2,5750,esteio,forest,1501,2004,68,980,NA -CF-2,5750,esteio,forest,1501,2004,69,975,NA -CF-2,5750,esteio,forest,1501,2004,7,965,NA -CF-2,5750,esteio,forest,1501,2004,71,976,NA -CF-2,5750,esteio,forest,1501,2004,72,983,NA -CF-2,5750,esteio,forest,1501,2004,74,993,NA -CF-2,5750,esteio,forest,1501,2004,75,1320,NA -CF-2,5750,esteio,forest,1501,2004,78,978,NA -CF-2,5750,esteio,forest,1501,2004,8,1316,NA -CF-2,5750,esteio,forest,1501,2004,80,999,NA -CF-2,5750,esteio,forest,1501,2006,814,1442,NA -CF-2,5750,esteio,forest,1501,2004,82,963,NA -CF-2,5750,esteio,forest,1501,2004,83,886,NA -CF-2,5750,esteio,forest,1501,2004,84,981,NA -CF-2,5750,esteio,forest,1501,2004,87,1386,NA -CF-2,5750,esteio,forest,1501,2004,89,996,996: one in h7 and one in d7 -CF-2,5750,esteio,forest,1501,2004,90,1331,NA -CF-2,5750,esteio,forest,1501,2004,91,994,NA -CF-2,5750,esteio,forest,1501,2004,93,1397,NA -CF-2,5750,esteio,forest,1501,2004,96,982,NA -CF-2,5750,esteio,forest,1501,2006,968,896,NA -CF-2,5750,esteio,forest,1501,2006,996,966,NA -FF-3,5751,esteio,one,1104,1999, U7,154,NA -FF-3,5751,esteio,one,1104,1999, U9,137,NA -FF-3,5751,esteio,one,1104,2000,100,277,NA -FF-3,5751,esteio,one,1104,2002,179,246,NA -FF-3,5751,esteio,one,1104,2006,305,403,NA -FF-2,5752,dimona,one,2108,2006,116,789,NA -FF-2,5752,dimona,one,2108,2000,186,280,NA -FF-2,5752,dimona,one,2108,2001,196,552,NA -FF-2,5752,dimona,one,2108,2000,214=305,214,NA -FF-2,5752,dimona,one,2108,2001,251,556,NA -FF-2,5752,dimona,one,2108,2001,308,585,NA -FF-2,5752,dimona,one,2108,2006,622,804,NA -FF-3,5753,esteio,one,1104,2004,21,371,NA -FF-3,5753,esteio,one,1104,2009,366,371,NA -FF-3,5753,esteio,one,1104,2002,43,400,NA -FF-3,5753,esteio,one,1104,2009,74,412,NA -FF-3,5753,esteio,one,1104,2006,98,405,NA -5754,5754,NA,NA,NA,2002,120,984,NA -5754,5754,NA,NA,NA,2000,170,625,NA -5754,5754,NA,NA,NA,2002,22,1354,NA -5754,5754,NA,NA,NA,2002,23,993,NA -5754,5754,NA,NA,NA,2002,26,1309,NA -5754,5754,NA,NA,NA,2002,27,1305,NA -5754,5754,NA,NA,NA,2001,297,1398,NA -5754,5754,NA,NA,NA,2001,300,1391,NA -5754,5754,NA,NA,NA,2001,316,1383,NA -5754,5754,NA,NA,NA,2003,321,806,NA -5754,5754,NA,NA,NA,2001,323,1390,NA -5754,5754,NA,NA,NA,2003,5,847,NA -5754,5754,NA,NA,NA,2002,501,632,NA -5754,5754,NA,NA,NA,2000,548,611,NA -5754,5754,NA,NA,NA,2002,57,928,NA -5754,5754,NA,NA,NA,2000,572,909,NA -5754,5754,NA,NA,NA,2001,608,1389,NA -5754,5754,NA,NA,NA,2001,632,1396,NA -5754,5754,NA,NA,NA,2003,PVC,24,NA -5754,5754,NA,NA,NA,2003,PVC,10,NA -5754,5754,NA,NA,NA,2003,PVC,61,NA -5754,5754,NA,NA,NA,2004,PVC,746,NA -5754,5754,NA,NA,NA,2003,PVC 10,801,NA -5754,5754,NA,NA,NA,2004,PVC 40,705,NA -5754,5754,NA,NA,NA,2003,PVC 61,832,NA -5754,5754,NA,NA,NA,2003,PVC 71,817,NA -5754,5754,NA,NA,NA,2003,PVC 73,831,NA -CF-3,5756,esteio,forest,1501,1999, U104,746,NA -CF-3,5756,esteio,forest,1501,1999, U116,467,NA -CF-3,5756,esteio,forest,1501,1999, U117,478,NA -CF-3,5756,esteio,forest,1501,1999, U171,425,NA -CF-3,5756,esteio,forest,1501,1999, U172,482,NA -CF-3,5756,esteio,forest,1501,2001,12,949,NA -CF-3,5756,esteio,forest,1501,2006,1272,1656,NA -CF-3,5756,esteio,forest,1501,2000,167,776,NA -CF-3,5756,esteio,forest,1501,2006,1671,1649,NA -CF-3,5756,esteio,forest,1501,2007,286,1687,NA -CF-3,5756,esteio,forest,1501,2006,342,1661,NA -CF-3,5756,esteio,forest,1501,1999,399,598,NA -CF-3,5756,esteio,forest,1501,2001,479,935,NA -CF-3,5756,esteio,forest,1501,2002,7,956,NA -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2006,116,62,NA -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2007,173,87,NA -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2001,252,292,NA -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2002,341,267,"not sure which is original, but think it is like this" -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2004,371,21,NA -CaboFrio-CF,CaboFrio-CF,NA,NA,NA,2007,5,2102,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2001,12,167,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2001,142,122,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2001,15,106,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2006,176,184,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2006,176,184,NA -Dimona-CF,Dimona-CF,NA,NA,NA,2001,77,108,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2006,1027,1257,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2006,1027,1257,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2007,121,1570,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2007,159,1581,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2009,174,1912,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2001,19,1036,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2006,257,1273,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2006,257,1273,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2001,277,1004,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2002,424,1118,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2000,435,930,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2007,48,1294,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2000,480,904,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2001,608,1077,NA -Florestal-CF,Florestal-CF,NA,NA,NA,2002,920,1442,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2001,103,295,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2001,11,287,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2006,116,62,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2001,122,263,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2006,204,42,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2004,43,224,NA -PortoAlegre-CF,PortoAlegre-CF,NA,NA,NA,2007,75,305,NA +habitat,ranch,plot_id,plot,year,old_tag_no,new_tag_no,notes +1-ha,DIM,FF-1,2107,2000,23,165,NA +1-ha,DIM,FF-1,2107,2000,67,245,NA +1-ha,DIM,FF-1,2107,2002,229,269,NA +1-ha,DIM,FF-1,2107,2006,287,326,NA +1-ha,DIM,FF-1,2107,2008,40,365,NA +1-ha,DIM,FF-2,2108,2000,123,NA,NA +1-ha,DIM,FF-2,2108,2000,41,NA,NA +1-ha,DIM,FF-2,2108,2000,64,NA,NA +1-ha,DIM,FF-2,2108,2005,227,240,NA +1-ha,DIM,FF-2,2108,2006,217,278,NA +1-ha,DIM,FF-2,2108,2006,262,229,NA +1-ha,DIM,FF-2,2108,2006,29,291,NA +1-ha,DIM,FF-2,2108,2006,C9 #69,NA,needs new number +1-ha,DIM,FF-2,2108,2007,184,331,NA +1-ha,EST,FF-3,5751,1999,U7,154,NA +1-ha,EST,FF-3,5751,1999,U9,137,NA +1-ha,EST,FF-3,5751,2000,100,277,NA +1-ha,EST,FF-3,5751,2002,179,246,NA +1-ha,EST,FF-3,5751,2006,305,403,NA +1-ha,PAL,FF-4,5753,2002,43,400,NA +1-ha,PAL,FF-4,5753,2004,21,371,NA +1-ha,PAL,FF-4,5753,2006,98,405,NA +1-ha,PAL,FF-4,5753,2009,366,371,NA +1-ha,PAL,FF-4,5753,2009,74,412,NA +10-ha,DIM,FF-5,2206,2002,45,25,NA +10-ha,DIM,FF-5,2206,2002,76,186,NA +10-ha,DIM,FF-5,2206,2003,19,193,NA +10-ha,DIM,FF-5,2206,2006,104,331,NA +10-ha,DIM,FF-5,2206,2006,108,341,NA +10-ha,DIM,FF-5,2206,2006,208,242,NA +10-ha,DIM,FF-5,2206,2006,269,322,NA +10-ha,DIM,FF-5,2206,2006,53,320,NA +10-ha,EST,FF-6,5752,2000,186,280,NA +10-ha,EST,FF-6,5752,2000,214=305,214,NA +10-ha,EST,FF-6,5752,2001,196,552,NA +10-ha,EST,FF-6,5752,2001,251,556,NA +10-ha,EST,FF-6,5752,2001,308,585,NA +10-ha,EST,FF-6,5752,2006,116,789,NA +10-ha,EST,FF-6,5752,2006,622,804,NA +10-ha,PAL,FF-7,5754,2000,170,625,NA +10-ha,PAL,FF-7,5754,2000,548,611,NA +10-ha,PAL,FF-7,5754,2000,572,909,NA +10-ha,PAL,FF-7,5754,2001,297,1398,NA +10-ha,PAL,FF-7,5754,2001,300,1391,NA +10-ha,PAL,FF-7,5754,2001,316,1383,NA +10-ha,PAL,FF-7,5754,2001,323,1390,NA +10-ha,PAL,FF-7,5754,2001,608,1389,NA +10-ha,PAL,FF-7,5754,2001,632,1396,NA +10-ha,PAL,FF-7,5754,2002,120,984,NA +10-ha,PAL,FF-7,5754,2002,22,1354,NA +10-ha,PAL,FF-7,5754,2002,23,993,NA +10-ha,PAL,FF-7,5754,2002,26,1309,NA +10-ha,PAL,FF-7,5754,2002,27,1305,NA +10-ha,PAL,FF-7,5754,2002,501,632,NA +10-ha,PAL,FF-7,5754,2002,57,928,NA +10-ha,PAL,FF-7,5754,2003,321,806,NA +10-ha,PAL,FF-7,5754,2003,5,847,NA +10-ha,PAL,FF-7,5754,2003,PVC,24,NA +10-ha,PAL,FF-7,5754,2003,PVC,10,NA +10-ha,PAL,FF-7,5754,2003,PVC,61,NA +10-ha,PAL,FF-7,5754,2003,PVC 10,801,NA +10-ha,PAL,FF-7,5754,2003,PVC 61,832,NA +10-ha,PAL,FF-7,5754,2003,PVC 71,817,NA +10-ha,PAL,FF-7,5754,2003,PVC 73,831,NA +10-ha,PAL,FF-7,5754,2004,PVC,746,NA +10-ha,PAL,FF-7,5754,2004,PVC 40,705,NA +CF,DIM,CF-4,Dimona-CF,2001,12,167,NA +CF,DIM,CF-4,Dimona-CF,2001,142,122,NA +CF,DIM,CF-4,Dimona-CF,2001,15,106,NA +CF,DIM,CF-4,Dimona-CF,2001,77,108,NA +CF,DIM,CF-4,Dimona-CF,2006,176,184,NA +CF,DIM,CF-4,Dimona-CF,2006,176,184,NA +CF,EST,CF-1,Florestal-CF,2000,435,930,NA +CF,EST,CF-1,Florestal-CF,2000,480,904,NA +CF,EST,CF-1,Florestal-CF,2001,19,1036,NA +CF,EST,CF-1,Florestal-CF,2001,277,1004,NA +CF,EST,CF-1,Florestal-CF,2001,608,1077,NA +CF,EST,CF-1,Florestal-CF,2002,424,1118,NA +CF,EST,CF-1,Florestal-CF,2002,920,1442,NA +CF,EST,CF-1,Florestal-CF,2006,1027,1257,NA +CF,EST,CF-1,Florestal-CF,2006,1027,1257,NA +CF,EST,CF-1,Florestal-CF,2006,257,1273,NA +CF,EST,CF-1,Florestal-CF,2006,257,1273,NA +CF,EST,CF-1,Florestal-CF,2007,121,1570,NA +CF,EST,CF-1,Florestal-CF,2007,159,1581,NA +CF,EST,CF-1,Florestal-CF,2007,48,1294,NA +CF,EST,CF-1,Florestal-CF,2009,174,1912,NA +CF,EST,CF-2,5750,2000,160,673,NA +CF,EST,CF-2,5750,2000,349,575,NA +CF,EST,CF-2,5750,2001,107,717,NA +CF,EST,CF-2,5750,2001,618,781,NA +CF,EST,CF-2,5750,2004,103,1395,NA +CF,EST,CF-2,5750,2004,104,989,NA +CF,EST,CF-2,5750,2004,104,1332,NA +CF,EST,CF-2,5750,2004,11,1305,NA +CF,EST,CF-2,5750,2004,111,1341,NA +CF,EST,CF-2,5750,2004,116,1306,NA +CF,EST,CF-2,5750,2004,12,1307,NA +CF,EST,CF-2,5750,2004,126,1130,NA +CF,EST,CF-2,5750,2004,128,1334,NA +CF,EST,CF-2,5750,2004,13,996,996: one in h7 and one in d7 +CF,EST,CF-2,5750,2004,15,977,NA +CF,EST,CF-2,5750,2004,16,893,NA +CF,EST,CF-2,5750,2004,17,1309,NA +CF,EST,CF-2,5750,2004,18,979,NA +CF,EST,CF-2,5750,2004,19,1321,NA +CF,EST,CF-2,5750,2004,2,956,NA +CF,EST,CF-2,5750,2004,20,995,NA +CF,EST,CF-2,5750,2004,21,973,NA +CF,EST,CF-2,5750,2004,22,1301,NA +CF,EST,CF-2,5750,2004,23,912,NA +CF,EST,CF-2,5750,2004,24,945,NA +CF,EST,CF-2,5750,2004,25,930,NA +CF,EST,CF-2,5750,2004,26,957,NA +CF,EST,CF-2,5750,2004,27,955,NA +CF,EST,CF-2,5750,2004,28,874,NA +CF,EST,CF-2,5750,2004,3,998,NA +CF,EST,CF-2,5750,2004,30,904,NA +CF,EST,CF-2,5750,2004,31,889,NA +CF,EST,CF-2,5750,2004,32,913,NA +CF,EST,CF-2,5750,2004,37,939,NA +CF,EST,CF-2,5750,2004,38,899,NA +CF,EST,CF-2,5750,2004,4,1317,NA +CF,EST,CF-2,5750,2004,41,921,NA +CF,EST,CF-2,5750,2004,42,879,NA +CF,EST,CF-2,5750,2004,43,875,NA +CF,EST,CF-2,5750,2004,44,961,NA +CF,EST,CF-2,5750,2004,45,878,NA +CF,EST,CF-2,5750,2004,46,884,NA +CF,EST,CF-2,5750,2004,48,906,NA +CF,EST,CF-2,5750,2004,5,962,NA +CF,EST,CF-2,5750,2004,50,935,NA +CF,EST,CF-2,5750,2004,51,986,NA +CF,EST,CF-2,5750,2004,52,1329,NA +CF,EST,CF-2,5750,2004,53,872,NA +CF,EST,CF-2,5750,2004,54,907,NA +CF,EST,CF-2,5750,2004,55,929,NA +CF,EST,CF-2,5750,2004,56,1392,NA +CF,EST,CF-2,5750,2004,58,964,NA +CF,EST,CF-2,5750,2004,59,1311,NA +CF,EST,CF-2,5750,2004,6,1313,NA +CF,EST,CF-2,5750,2004,61,991,NA +CF,EST,CF-2,5750,2004,62,969,NA +CF,EST,CF-2,5750,2004,64,1000,NA +CF,EST,CF-2,5750,2004,66,990,NA +CF,EST,CF-2,5750,2004,67,992,NA +CF,EST,CF-2,5750,2004,68,980,NA +CF,EST,CF-2,5750,2004,69,975,NA +CF,EST,CF-2,5750,2004,7,965,NA +CF,EST,CF-2,5750,2004,71,976,NA +CF,EST,CF-2,5750,2004,72,983,NA +CF,EST,CF-2,5750,2004,74,993,NA +CF,EST,CF-2,5750,2004,75,1320,NA +CF,EST,CF-2,5750,2004,78,978,NA +CF,EST,CF-2,5750,2004,8,1316,NA +CF,EST,CF-2,5750,2004,80,999,NA +CF,EST,CF-2,5750,2004,82,963,NA +CF,EST,CF-2,5750,2004,83,886,NA +CF,EST,CF-2,5750,2004,84,981,NA +CF,EST,CF-2,5750,2004,87,1386,NA +CF,EST,CF-2,5750,2004,89,996,996: one in h7 and one in d7 +CF,EST,CF-2,5750,2004,90,1331,NA +CF,EST,CF-2,5750,2004,91,994,NA +CF,EST,CF-2,5750,2004,93,1397,NA +CF,EST,CF-2,5750,2004,96,982,NA +CF,EST,CF-2,5750,2006,1312,1416,NA +CF,EST,CF-2,5750,2006,1333,1404,NA +CF,EST,CF-2,5750,2006,1335,1414,NA +CF,EST,CF-2,5750,2006,1381,1391,NA +CF,EST,CF-2,5750,2006,342,1425,NA +CF,EST,CF-2,5750,2006,465,1436,NA +CF,EST,CF-2,5750,2006,468,1415,NA +CF,EST,CF-2,5750,2006,564,1418,NA +CF,EST,CF-2,5750,2006,814,1442,NA +CF,EST,CF-2,5750,2006,968,896,NA +CF,EST,CF-2,5750,2006,996,966,NA +CF,EST,CF-2,5750,2007,247,2066,NA +CF,EST,CF-2,5750,2007,36,2018,NA +CF,EST,CF-2,5750,2007,36,2018,NA +CF,EST,CF-2,5750,2024,1340,13907,NA +CF,EST,CF-2,5750,2024,147,13901,NA +CF,EST,CF-2,5750,2024,153,13902,NA +CF,EST,CF-2,5750,2024,2361,13908,NA +CF,EST,CF-2,5750,2024,2365,13909,NA +CF,EST,CF-2,5750,2024,2390,13560,NA +CF,EST,CF-2,5750,2024,460,13905,NA +CF,EST,CF-2,5750,2024,461,13904,NA +CF,EST,CF-2,5750,2024,767,13910,NA +CF,EST,CF-3,5756,1999,399,598,NA +CF,EST,CF-3,5756,1999,U104,746,NA +CF,EST,CF-3,5756,1999,U116,467,NA +CF,EST,CF-3,5756,1999,U117,478,NA +CF,EST,CF-3,5756,1999,U171,425,NA +CF,EST,CF-3,5756,1999,U172,482,NA +CF,EST,CF-3,5756,2000,167,776,NA +CF,EST,CF-3,5756,2001,12,949,NA +CF,EST,CF-3,5756,2001,479,935,NA +CF,EST,CF-3,5756,2002,7,956,NA +CF,EST,CF-3,5756,2006,1272,1656,NA +CF,EST,CF-3,5756,2006,1671,1649,NA +CF,EST,CF-3,5756,2006,342,1661,NA +CF,EST,CF-3,5756,2007,286,1687,NA +CF,PAL,CF-5,PortoAlegre-CF,2001,103,295,NA +CF,PAL,CF-5,PortoAlegre-CF,2001,11,287,NA +CF,PAL,CF-5,PortoAlegre-CF,2001,122,263,NA +CF,PAL,CF-5,PortoAlegre-CF,2004,43,224,NA +CF,PAL,CF-5,PortoAlegre-CF,2006,116,62,NA +CF,PAL,CF-5,PortoAlegre-CF,2006,204,42,NA +CF,PAL,CF-5,PortoAlegre-CF,2007,75,305,NA +CF,PAL,CF-6,CaboFrio-CF,2001,252,292,NA +CF,PAL,CF-6,CaboFrio-CF,2002,341,267,"not sure which is original, but think it is like this" +CF,PAL,CF-6,CaboFrio-CF,2004,371,21,NA +CF,PAL,CF-6,CaboFrio-CF,2006,116,62,NA +CF,PAL,CF-6,CaboFrio-CF,2007,173,87,NA +CF,PAL,CF-6,CaboFrio-CF,2007,5,2102,NA diff --git a/docs/tag_changes/tag_changes.Rmd b/docs/tag_changes/tag_changes.Rmd index 9405973..f938d2f 100644 --- a/docs/tag_changes/tag_changes.Rmd +++ b/docs/tag_changes/tag_changes.Rmd @@ -53,6 +53,7 @@ here::here() knitr::opts_chunk$set(echo = TRUE) ## Global options options(max.print="75") + opts_chunk$set(echo=FALSE, cache=TRUE, prompt=FALSE, @@ -72,11 +73,82 @@ ha_sites <- read_csv(here("data","survey_clean","heliconia_survey_clean.csv"), c tag_changes<-left_join(tag_changes,ha_sites, by="plot") %>% select(habitat,ranch,plot_id,plot,year,old_tag_no,new_tag_number,notes) rm(ha_sites) - -# ANY CHANGES TO THE TAG NUMBERS AS OF June 1, 2023 WILL BE ENTERED HERE -tag_changes_updated <- tag_changes -# %>% +# Standardize + +tag_changes<-tag_changes %>% + mutate(ranch = + case_when( + ranch == "PortoAlegre" ~ "PAL", + .default = as.character(ranch) + ) + ) %>% + rename(new_tag_no=new_tag_number) + + +# ANY CHANGES TO THE TAG NUMBERS AS OF June 1, 2023 ARE ENTERED MANUALLY HERE + +# 2024 Minisurvey done to prep for grant proposal + +tag_changes_2024_CF2 <- data.frame(old_tag_no=character(), + new_tag_no=integer(), + notes=character(), + stringsAsFactors=FALSE) +tag_changes_2024_CF2 <- tag_changes_2024_CF2 %>% + add_row( + old_tag_no="153", + new_tag_no=13902, + notes=NA + ) %>% + add_row(old_tag_no="2361", + new_tag_no=13908, + notes=NA + ) %>% + add_row(old_tag_no="1340", + new_tag_no=13907, + notes=NA + ) %>% + add_row(old_tag_no="2365", + new_tag_no=13909, + notes=NA + ) %>% + add_row(old_tag_no="2390", + new_tag_no=13560, + notes=NA + ) %>% + add_row(old_tag_no="767", + new_tag_no=13910, + notes=NA + ) %>% + add_row(old_tag_no="147", + new_tag_no=13901, + notes=NA + ) %>% + add_row(old_tag_no="460", + new_tag_no=13905, + notes=NA + ) %>% + add_row(old_tag_no="461", + new_tag_no=13904, + notes=NA + ) %>% + mutate(habitat="CF", + ranch="EST", + plot_id="CF-2", + plot="5750", + year=2024) + +# Add back to file, rearrange, and save +tag_changes_updated<-bind_rows(tag_changes,tag_changes_2024_CF2) + +# Arrange and save updated version + +tag_changes_updated<-tag_changes_updated %>% + arrange(habitat, + ranch, + plot_id, + year, + old_tag_no) write_csv(tag_changes_updated, here("data","survey_clean","tag_changes.csv")) ``` @@ -86,14 +158,58 @@ write_csv(tag_changes_updated, here("data","survey_clean","tag_changes.csv")) **Last update:** `r format(Sys.time(), '%d %B %Y')` -Field survey teams periodically change the tags attached to individual plants (e.g., if the tag becomes difficult to read or the tag is lost). Below is a record of these changes; these records are necessary when using the original data sheets to validate plant records. +Field survey teams periodically change the tags attached to individual plants (e.g., if the tag becomes difficult to read or the tag is lost under a fallen branch). Below is (a) a summary of the number of tags changed per plot and (b) a list of the individual changes; these records are necessary if using the original data sheets to validate plant records. + +## Summary of tag replacements. + + + +```{r nplants_summary, cached=TRUE, warning=FALSE,message = FALSE} + +total_tagged <- read_csv(here("data","survey_clean","heliconia_survey_clean.csv"), col_types = cols()) %>% + group_by(habitat,plot_id) %>% + summarise(total_tagged=n_distinct(tag_number)) + +tag_change_summary<-tag_changes_updated %>% + group_by(habitat,plot_id,ranch) %>% + tally() %>% + left_join(total_tagged) %>% + rename(tags_changed=n) %>% + ungroup() +tag_change_summary<-tag_change_summary %>% + mutate(percent_changed=tags_changed/total_tagged*100) %>% + mutate(percent_changed=round(percent_changed,2)) %>% + select(-habitat) %>% + arrange(ranch, + plot_id + ) + + + +kbl(tag_change_summary, + align = "rrrrr") %>% +pack_rows("1-ha Fragments", 1, 4) %>% + pack_rows("10-ha Fragments", 5, 7) %>% + pack_rows("Continuous Forest", 8, 13) %>% + column_spec(1, width = "15em") + + + +``` + +--- + +## List of all tags replaced. + +```{r nplants_list, cached=TRUE, warning=FALSE,message = FALSE} + + +options(knitr.kable.NA = '') + +kbl(tag_changes_updated, + align = "cccccccc") -```{r nplants_total, cached=TRUE, warning=FALSE,message = FALSE} -tag_changes_updated<-tag_changes_updated %>% - group_by(plot) %>% - arrange(plot, year) -kbl(tag_changes_updated) ``` diff --git a/docs/tag_changes/tag_changes.html b/docs/tag_changes/tag_changes.html index e3cd306..e070202 100644 --- a/docs/tag_changes/tag_changes.html +++ b/docs/tag_changes/tag_changes.html @@ -1665,7 +1665,12 @@