Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

biothings_client. version specificity to 0.3.1 #46

Open
yoavkt opened this issue Jan 12, 2025 · 2 comments
Open

biothings_client. version specificity to 0.3.1 #46

yoavkt opened this issue Jan 12, 2025 · 2 comments

Comments

@yoavkt
Copy link
Collaborator

yoavkt commented Jan 12, 2025

mygene python package (AKA MyGene.Info) is incompatible with the current biothings_client version (version 0.4.0, released on 2025/01/10). It is compatible with the biothings_client version (v0.3.1 released on 2023/11/13). Yet mygene doesn't require the earlier version hence the bypass in the gene-benchmark package.
See the issue at biothings/mygene.info#160

@mmdanziger
Copy link
Collaborator

Could you clarify in the issue title and text what actionable steps you intend with this issue? Ie, what do you want to have happen, and how will we know when this issue can be closed?

@mmdanziger
Copy link
Collaborator

Note that the mygene package had its last release in 2021 https://pypi.org/project/mygene/#history and it seems development has been moved to https://pypi.org/project/biothings-client/#history which is actively maintained. I would recommend dropping mygene and just using biothings-client directly.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants