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Running in multiple fasta files #19

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schlogl2017 opened this issue Jun 10, 2023 · 0 comments
Open

Running in multiple fasta files #19

schlogl2017 opened this issue Jun 10, 2023 · 0 comments

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@schlogl2017
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Hi there. I have folders with many fasta files and when I use this:

# usr/bin/env bash

for fasta in Genomes_new/"$1"/"$2"/"$3"/CHR/*_chr.fna; 
do
 #echo "$fasta"
  trf "$fasta" 2 7 7 80 10 50 500 -h; 
done

But I got only one file and then trf finishes. Do you have any suggestion to get all fasta files done?
Paulo

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