diff --git a/README.md b/README.md index aa793e88..7ff7a775 100644 --- a/README.md +++ b/README.md @@ -10,7 +10,7 @@ [![pylint](imgs/pylint.svg)](https://github.com/spiralgenetics/truvari/actions/workflows/pylint.yml) [![FuncTests](https://github.com/spiralgenetics/truvari/actions/workflows/func_tests.yml/badge.svg?branch=develop&event=push)](https://github.com/spiralgenetics/truvari/actions/workflows/func_tests.yml) [![coverage](imgs/coverage.svg)](https://github.com/spiralgenetics/truvari/actions/workflows/func_tests.yml) -[![develop](https://img.shields.io/github/commits-since/spiralgenetics/truvari/v3.1.0)](https://github.com/spiralgenetics/truvari/commits/develop) +[![develop](https://img.shields.io/github/commits-since/spiralgenetics/truvari/v3.2.0)](https://github.com/spiralgenetics/truvari/commits/develop) [![Downloads](https://pepy.tech/badge/truvari)](https://pepy.tech/project/truvari) Toolkit for benchmarking, merging, and annotating Structrual Variants diff --git a/docs/api/truvari.rst b/docs/api/truvari.rst index e56b9481..495a48cc 100644 --- a/docs/api/truvari.rst +++ b/docs/api/truvari.rst @@ -160,6 +160,10 @@ sizesim ^^^^^^^ .. autofunction:: sizesim +vcf_ranges +^^^^^^^^^^ +.. autofunction:: vcf_ranges + weighted_score ^^^^^^^^^^^^^^ .. autofunction:: weighted_score @@ -174,6 +178,10 @@ help_unknown_cmd ^^^^^^^^^^^^^^^^ .. autofunction:: help_unknown_cmd +make_temp_filename +^^^^^^^^^^^^^^^^^^ +.. autofunction:: make_temp_filename + optimize_df_memory ^^^^^^^^^^^^^^^^^^ .. autofunction:: optimize_df_memory @@ -182,6 +190,10 @@ restricted_float ^^^^^^^^^^^^^^^^ .. autofunction:: restricted_float +restricted_int +^^^^^^^^^^^^^^^^ +.. autofunction:: restricted_int + setup_logging ^^^^^^^^^^^^^ .. autofunction:: setup_logging diff --git a/docs/v3.3.0/Citations.md b/docs/v3.3.0/Citations.md new file mode 100644 index 00000000..b72e3817 --- /dev/null +++ b/docs/v3.3.0/Citations.md @@ -0,0 +1,31 @@ +# Citing Truvari + +Pre-print on Biorxiv while in submission: + +Truvari: Refined Structural Variant Comparison Preserves Allelic Diversity +doi: https://doi.org/10.1101/2022.02.21.481353 + +# Citations + +List of publications using Truvari. Most of these are just pulled from a [Google Scholar Search](https://scholar.google.com/scholar?q=truvari). Please post in the [show-and-tell](https://github.com/spiralgenetics/truvari/discussions/categories/show-and-tell) to have your publication added to the list. +* [A robust benchmark for detection of germline large deletions and insertions](https://www.nature.com/articles/s41587-020-0538-8) +* [Leveraging a WGS compression and indexing format with dynamic graph references to call structural variants](https://www.biorxiv.org/content/10.1101/2020.04.24.060202v1.abstract) +* [Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls](https://academic.oup.com/gigascience/article/8/4/giz040/5477467?login=true) +* [Parliament2: Accurate structural variant calling at scale](https://academic.oup.com/gigascience/article/9/12/giaa145/6042728) +* [Learning What a Good Structural Variant Looks Like](https://www.biorxiv.org/content/10.1101/2020.05.22.111260v1.full) +* [Long-read trio sequencing of individuals with unsolved intellectual disability](https://www.nature.com/articles/s41431-020-00770-0) +* [lra: A long read aligner for sequences and contigs](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009078) +* [Samplot: a platform for structural variant visual validation and automated filtering](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02380-5) +* [AsmMix: A pipeline for high quality diploid de novo assembly](https://www.biorxiv.org/content/10.1101/2021.01.15.426893v1.abstract) +* [Accurate chromosome-scale haplotype-resolved assembly of human genomes](https://www.nature.com/articles/s41587-020-0711-0) +* [Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome](https://www.nature.com/articles/s41587-019-0217-9) +* [NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data](https://academic.oup.com/bioinformatics/article-abstract/37/11/1497/5466452) +* [SVIM-asm: structural variant detection from haploid and diploid genome assemblies](https://academic.oup.com/bioinformatics/article/36/22-23/5519/6042701?login=true) +* [Readfish enables targeted nanopore sequencing of gigabase-sized genomes](https://www.nature.com/articles/s41587-020-00746-x) +* [stLFRsv: A Germline Structural Variant Analysis Pipeline Using Co-barcoded Reads](https://internal-journal.frontiersin.org/articles/10.3389/fgene.2021.636239/full) +* [Long-read-based human genomic structural variation detection with cuteSV](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02107-y) +* [An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates](https://f1000research.com/articles/10-246) +* [Paragraph: a graph-based structural variant genotyper for short-read sequence data](https://link.springer.com/article/10.1186/s13059-019-1909-7) +* [Genome-wide investigation identifies a rare copy-number variant burden associated with human spina bifida](https://www.nature.com/articles/s41436-021-01126-9) +* [TT-Mars: Structural Variants Assessment Based on Haplotype-resolved Assemblies](https://www.biorxiv.org/content/10.1101/2021.09.27.462044v1.abstract) +* [An ensemble deep learning framework to refine large deletions in linked-reads](https://www.biorxiv.org/content/10.1101/2021.09.27.462057v1.abstract) diff --git a/docs/v3.3.0/Comparing-two-SV-programs.md b/docs/v3.3.0/Comparing-two-SV-programs.md new file mode 100644 index 00000000..f9ca5e0b --- /dev/null +++ b/docs/v3.3.0/Comparing-two-SV-programs.md @@ -0,0 +1,63 @@ +A frequent application of comparing SVs is to perform a 'bakeoff' of performance +between two SV programs against a single set of base calls. + +Beyond looking at the Truvari results/report, you may like to investigate what calls +are different between the programs. + +Below is a set of scripts that may help you generate those results. For our examples, +we'll be comparing arbitrary programs Asvs and Bsvs aginst base calls Gsvs. + +*_Note_* - This assumes that each record in Gsvs has a unique ID in the vcf. + +Generate the Truvari report for Asvs and Bsvs +============================================= + +```bash +truvari bench -b Gsvs.vcf.gz -c Asvs.vcf.gz -o cmp_A/ ... +truvari bench -b Gsvs.vcf.gz -c Bsvs.vcf.gz -o cmp_B/ ... +``` + +Combine the TPs within each report +================================== + +```bash +cd cmp_A/ +paste <(grep -v "#" tp-base.vcf) <(grep -v "#" tp-call.vcf) > combined_tps.txt +cd ../cmp_B/ +paste <(grep -v "#" tp-base.vcf) <(grep -v "#" tp-call.vcf) > combined_tps.txt +``` + +Grab the FNs missed by only one program +======================================= + +```bash +(grep -v "#" cmp_A/fn.vcf && grep -v "#" cmp_B/fn.vcf) | cut -f3 | sort | uniq -c | grep "^ *1 " | cut -f2- -d1 > missed_names.txt +``` + +Pull the TP sets' difference +============================ + +```bash +cat missed_names.txt | xargs -I {} grep -w {} cmp_A/combined_tps.txt > missed_by_B.txt +cat missed_names.txt | xargs -I {} grep -w {} cmp_B/combined_tps.txt > missed_by_A.txt +``` + +To look at the base-calls that Bsvs found, but Asvs didn't, run `cut -f1-12 missed_by_A.txt`. + +To look at the Asvs that Bsvs didn't find, run `cut -f13- missed_by_B.txt`. + +Calculate the overlap +===================== + +One may wish for summary numbers of how many calls are shared/unique between the two programs. +Truvari has a program to help. See [[Consistency-report|consistency]] for details. + +Shared FPs between the programs +=============================== + +All of the work above has been about how to analyze the TruePositives. If you'd like to see which calls are shared between Asvs and Bsvs that aren't in Gsvs, simply run Truvari again. + +```bash +bgzip cmp_B/fp.vcf && tabix -p vcf cmp_B/fp.vcf.gz +truvari bench -b cmp_A/fp.vcf -c cmp_B/fp.vcf.gz -o shared_fps ... +``` \ No newline at end of file diff --git a/docs/v3.3.0/Development.md b/docs/v3.3.0/Development.md new file mode 100644 index 00000000..0774b2c8 --- /dev/null +++ b/docs/v3.3.0/Development.md @@ -0,0 +1,90 @@ +# Truvari API +Many of the helper methods/objects are documented such that developers can reuse truvari in their own code. To see developer documentation, visit [readthedocs](https://truvari.readthedocs.io/en/latest/). + +Documentation can also be seen using +```python +import truvari +help(truvari) +``` + +# docker + +A Dockerfile exists to build an image of Truvari. To make a Docker image, clone the repository and run +```bash +docker build -t truvari . +``` + +You can then run Truvari through docker using +```bash +docker run -v `pwd`:/data -it truvari +``` +Where `pwd` can be whatever directory you'd like to mount in the docker to the path `/data/`, which is the working directory for the Truvari run. You can provide parameters directly to the entry point. +```bash +docker run -v `pwd`:/data -it truvari anno svinfo -i example.vcf.gz +``` + +If you'd like to interact within the docker container for things like running the CI/CD scripts +```bash +docker run -v `pwd`:/data --entrypoint /bin/bash -it truvari +``` +You'll now be inside the container and can run FuncTests or run Truvari directly +```bash +bash repo_utils/truvari_ssshtests.sh +truvari anno svinfo -i example.vcf.gz +``` + +# CI/CD + +Scripts that help ensure the tool's quality. Extra dependencies need to be installed in order to run Truvari's CI/CD scripts. + +```bash +pip install pylint anybadge coverage +``` + +Check code formatting with +```bash +python repo_utils/pylint_maker.py +``` +We use [autopep8](https://pypi.org/project/autopep8/) (via [vim-autopep8](https://github.com/tell-k/vim-autopep8)) for formatting. + +Test the code and generate a coverage report with +```bash +bash repo_utils/truvari_ssshtests.sh +``` + +Truvari leverages github actions to perform these checks when new code is pushed to the repository. We've noticed that the actions sometimes hangs through no fault of the code. If this happens, cancel and resubmit the job. Once FuncTests are successful, it uploads an artifact of the `coverage html` report which you can download to see a line-by-line accounting of test coverage. + +# git flow + +To organize the commits for the repository, we use [git-flow](https://danielkummer.github.io/git-flow-cheatsheet/). Therefore, `develop` is the default branch, the latest tagged release is on `master`, and new, in-development features are within `feature/` + +When contributing to the code, be sure you're working off of develop and have run `git flow init`. + +# versioning + +Truvari uses [Semantic Versioning](https://semver.org/). As of v3.0.0, a single version is kept in the code under `truvari/__init__.__version__`. We try to keep the suffix `-dev` on the version in the develop branch. When cutting a new release, we may replace the suffix with `-rc` if we've built a release candidate that may need more testing/development. Once we've committed to a full release that will be pushed to PyPi, no suffix is placed on the version. + +# docs + +The github wiki serves the documentation most relevant to the `develop/` branch. When cutting a new release, we freeze and version the wiki's documentation with the helper utility `docs/freeze_wiki.sh`. + +# Creating a release +Follow these steps to create a release + +0) Bump release version +1) Run tests locally +2) Update API Docs +3) Freeze the Wiki +4) Ensure all code is checked in +5) Do a [git-flow release](https://danielkummer.github.io/git-flow-cheatsheet/) +6) Use github action to make a testpypi release +7) Check test release +```bash +python3 -m venv test_truvari +python3 -m pip install --index-url https://test.pypi.org/simple --extra-index-url https://pypi.org/simple/ truvari +``` +8) Use GitHub action to make a pypi release +9) Change Updates Wiki +10) Download release-tarball.zip from step #8’s action +11) Create release (include #9) from the tag +12) Checkout develop and Bump to dev version and README ‘commits since’ badge \ No newline at end of file diff --git a/docs/v3.3.0/Edit-Distance-Ratio-vs-Sequence-Similarity.md b/docs/v3.3.0/Edit-Distance-Ratio-vs-Sequence-Similarity.md new file mode 100644 index 00000000..eb45ce30 --- /dev/null +++ b/docs/v3.3.0/Edit-Distance-Ratio-vs-Sequence-Similarity.md @@ -0,0 +1,55 @@ +By default, Truvari uses [edlib](https://github.com/Martinsos/edlib) to calculate the edit distance between two SV calls. Optionally, the [Levenshtein edit distance ratio](https://en.wikipedia.org/wiki/Levenshtein_distance) can be used to compute the `--pctsim` between two variants. These measures are different than the sequence similarity calculated by [Smith-Waterman alignment](https://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm). + +To show this difference, consider the following two sequences.: + +``` + AGATACAGGAGTACGAACAGTACAGTACGA + |||||||||||||||*|||||||||||||| +ATCACAGATACAGGAGTACGTACAGTACAGTACGA + +30bp Aligned +1bp Mismatched (96% similarity) +5bp Left-Trimmed (~14% of the bottom sequence) +``` + +The code below runs swalign, Levenshtein, and edlib to compute the `--pctsim` between the two sequences. + + +```python +import swalign +import Levenshtein +import edlib + +seq1 = "AGATACAGGAGTACGAACAGTACAGTACGA" +seq2 = "ATCACAGATACAGGAGTACGTACAGTACAGTACGA" + +scoring = swalign.NucleotideScoringMatrix(2, -1) +alner = swalign.LocalAlignment(scoring, gap_penalty=-2, gap_extension_decay=0.5) +aln = alner.align(seq1, seq2) +mat_tot = aln.matches +mis_tot = aln.mismatches +denom = float(mis_tot + mat_tot) +if denom == 0: + ident = 0 +else: + ident = mat_tot / denom +scr = edlib.align(seq1, seq2) +totlen = len(seq1) + len(seq2) + +print('swalign', ident) +# swalign 0.966666666667 +print('levedit', Levenshtein.ratio(seq1, seq2)) +# levedit 0.892307692308 +print('edlib', (totlen - scr["editDistance"]) / totlen) +# edlib 0.9076923076923077 +``` + +Because the swalign procedure only considers the number of matches and mismatches, the `--pctsim` is higher than the edlib and Levenshtein ratio. + +If we were to account for the 5 'trimmed' bases from the Smith-Waterman alignment when calculating the `--pctsim` by counting each trimmed base as a mismatch, we would see the similarity drop to ~83%. + +[This post](https://stackoverflow.com/questions/14260126/how-python-levenshtein-ratio-is-computed) has a nice response describing exactly how the Levenshtein ratio is computed. + +The Smith-Waterman alignment is much more expensive to compute compared to the Levenshtein ratio, and does not account for 'trimmed' sequence difference. + +However, edlib is the fastest comparison method and is used by default. Levenshtein can be specified with `--use-lev` in `bench` and `collapse`. \ No newline at end of file diff --git a/docs/v3.3.0/GIAB-stratifications.sh.md b/docs/v3.3.0/GIAB-stratifications.sh.md new file mode 100644 index 00000000..7666c641 --- /dev/null +++ b/docs/v3.3.0/GIAB-stratifications.sh.md @@ -0,0 +1,17 @@ +As part of the GIAB analysis, tandem repeat (TR) stratifications for false positives (FP), false negatives (FN), and true positives (TP) were analyzed. See [this discussion](https://groups.google.com/d/msg/giab-analysis-team/tAtVBm9Fdrw/I2qeazh8AwAJ) for details. + +The stratifications.sh script automates the procedure above by taking a Truvari bench output directory as the first argument and TR repeat annotations (found in the link above) to create the following files in the output directory. + +Running this script requires `bedtools`, `vcf-sort`, and `bgzip` to be in your environment. + + +| FileName | Description | +|---------------------|---------------------------------------| +| fn_ins_nonTR.vcf.gz | FN insertions not found in TR regions | +| fn_ins_TR.vcf.gz | FN insertions found in TR regions | +| fp_ins_nonTR.vcf.gz | FP insertions not found in TR regions | +| fp_ins_TR.vcf.gz | FP insertions found in TR regions | +| fn_del_nonTR.vcf.gz | FN insertions not found in TR regions | +| fn_del_TR.vcf.gz | FN insertions found in TR regions | +| fp_del_nonTR.vcf.gz | FP insertions not found in TR regions | +| fp_del_TR.vcf.gz | FP insertions found in TR regions | \ No newline at end of file diff --git a/docs/v3.3.0/Home.md b/docs/v3.3.0/Home.md new file mode 100644 index 00000000..3bd133bf --- /dev/null +++ b/docs/v3.3.0/Home.md @@ -0,0 +1,35 @@ +The wiki holds documentation most relevant for develop. For information on a specific version of Truvari, see [`docs/`](https://github.com/spiralgenetics/truvari/tree/develop/docs) + +Truvari: Refined Structural Variant Comparison Preserves Allelic Diversity +doi: https://doi.org/10.1101/2022.02.21.481353 + +# Before you start +VCFs aren't always created with a strong adherence to the format's specification. + +Truvari expects input VCFs to be valid so that it will only output valid VCFs. + +We've developed a separate tool that runs multiple validation programs and standard VCF parsing libraries in order to validate a VCF. + +Run [this program](https://github.com/acenglish/usable_vcf) over any VCFs that are giving Truvari trouble. + +Furthermore, Truvari expects 'resolved' SVs (e.g. DEL/INS) and will not interpret BND signals across SVTYPEs (e.g. combining two BND lines to match a DEL call). A brief description of Truvari bench methodology is linked below. + +# Index + +- [[Updates|Updates]] +- [[Installation|Installation]] +- Truvari Commands: + - [[bench|bench]] + - [[The multimatch parameter|The--multimatch-parameter]] + - [[Edit Distance Ratio vs Sequence Similarity|Edit-Distance-Ratio-vs-Sequence-Similarity]] + - [[Multi-allelic VCFs|Multi-allelic-VCFs]] + - [[stratifications.sh|GIAB-stratifications.sh]] + - [[Comparing two SV programs|Comparing-two-SV-programs]] + - [[consistency|consistency]] + - [[anno|anno]] + - [[collapse|collapse]] + - [[vcf2df|vcf2df]] + - [[segment|segment]] +- [[Development|Development]] +- [[Citations|Citations]] +- [[Resources|Resources]] \ No newline at end of file diff --git a/docs/v3.3.0/Installation.md b/docs/v3.3.0/Installation.md new file mode 100644 index 00000000..bcaeabaa --- /dev/null +++ b/docs/v3.3.0/Installation.md @@ -0,0 +1,47 @@ +Recommended +=========== +For stable versions of Truvari, use pip +``` +python3 -m pip install truvari +``` +Specific versions can be installed via +``` +python3 -m pip install truvari==3.0.0 +``` +See [pypi](https://pypi.org/project/Truvari/#history) for a history of all distributed releases. + +Manual Installation +=================== +To build Truvari directly, clone the repository and switch to a specific tag. +``` +git clone https://github.com/spiralgenetics/truvari.git +git checkout tags/v3.0.0 +python3 setup.py install +``` +To see a list of all available tags, run: +``` +git tag -l +``` +If you have an older clone of the repository, but don't see the version you're looking for in tags, make sure to pull the latest changes: +``` +git pull +git fetch --all --tags +``` + +Mamba +===== +Users can follow instructions here (https://mamba.readthedocs.io/en/latest/installation.html) to install mamba. (A faster alternative conda compatible package manager.) + +Creating an environment with Truvari and its dependencies. +``` +mamba create -c conda-forge -c bioconda -n truvari truvari +``` +Note: as of May 4, 2022 mamba is up to date with Truvari's v3.2.0 release. Until we implement an auto-deployment to our github actions, mamba official releases may lag behind. + +Building from develop +===================== +The default branch is `develop`, which holds in-development changes. This is for developers or those wishing to try experimental features and is not recommended for production. Development is versioned higher than the most recent stable release with an added suffix (e.g. Current stable release is `3.0.0`, develop holds `3.1.0-dev`). If you'd like to install develop, repeat the steps above but without `git checkout tags/v3.0.0`. See [wiki](https://github.com/spiralgenetics/truvari/wiki/Development#git-flow) for details on how branching is handled. + +Docker +====== +See [Development](https://github.com/spiralgenetics/truvari/wiki/Development#docker) for details on building a docker container. diff --git a/docs/v3.3.0/MatchIds.md b/docs/v3.3.0/MatchIds.md new file mode 100644 index 00000000..29e070ae --- /dev/null +++ b/docs/v3.3.0/MatchIds.md @@ -0,0 +1,27 @@ +Using `bench` MatchId +===================== + +MatchIds are used to tie base/comparison calls together. MatchIds have a structure of `{chunkid}.{baseid}.{compid}`. +Where: + - chunkid - Unique id per-chunk of calls. All calls sharing chunkid were within `--chunksize` distance and were + compared. + - baseid - The number of the base call from this chunk + - compid - The number of the comp call from this chunk + +Doing basic pairing with MatchIds when results didn't have `--multimatch` is straight forward. For example, to tie tp-base.vcf and tp-call.vcf calls together, they will have identical MatchIds. + +MatchIds with `_` for the baseid or compid are calls that were in a chunk without a counterpart (e.g. `5._.0` is the +first comparison call from the fifth chunk, which had no base calls.) + +Tieing a false positives/negatives to their closest matching counter part is a little tricker. +For example, a false negative with MatchId `3.1.0`, we'll need to look in both the `fp.vcf` and `tp-call.vcf` for +`3.*.0`. + +When using `--multimatch` there can be instances such as: +``` +VCF MatchId +tp-base 3.0.0 +tp-call 3.0.0 +tp-call 3.0.1 +``` +Here, the 0th base/comp call match to one another. Additionally, the 1st comp call `3.0.1` also matches to the 0th base call `tp-base 3.0.0`. \ No newline at end of file diff --git a/docs/v3.3.0/Multi-allelic-VCFs.md b/docs/v3.3.0/Multi-allelic-VCFs.md new file mode 100644 index 00000000..7a5f7876 --- /dev/null +++ b/docs/v3.3.0/Multi-allelic-VCFs.md @@ -0,0 +1,11 @@ +Truvari only runs on comparing the first alternate allele in the base and comparison calls. If VCFs containing multi-allelic sites: + +``` +chr2 1948201 . T TACAACACGTACGATCAGTAGAC,TCAACACACAACACGTACGATCAGTAGAC .... +``` + +Pre-process the VCFs with bcftools to get a more complete result: + +```bash +bcftools norm -m-any base_calls.vcf.gz | bgzip > base_calls_split.vcf.gz +``` \ No newline at end of file diff --git a/docs/v3.3.0/Resources.md b/docs/v3.3.0/Resources.md new file mode 100644 index 00000000..25a76ce1 --- /dev/null +++ b/docs/v3.3.0/Resources.md @@ -0,0 +1,3 @@ +*page in progress* + +Use `git-lfs` to pull the resources. Currently only useful for `truvari anno trf` \ No newline at end of file diff --git a/docs/v3.3.0/The--multimatch-parameter.md b/docs/v3.3.0/The--multimatch-parameter.md new file mode 100644 index 00000000..bee54a12 --- /dev/null +++ b/docs/v3.3.0/The--multimatch-parameter.md @@ -0,0 +1,3 @@ +By default, Truvari bench will only allow a one-to-one match between a base call and comparison call. The motivation for this is be more strict when trying identify FPs in comparison calls. For example, if you have a redundant variant reported in the comparison calls, only the single best representation will become a TP, where the rest will be FPs. + +With the `--multimatch` parameter, we can get around this by allowing all of the redundant matches of base and comparison calls. This should have the effect of increasing the reported recall and specificity as redundantly used calls are only counted once for the final summary metrics. \ No newline at end of file diff --git a/docs/v3.3.0/Updates.md b/docs/v3.3.0/Updates.md new file mode 100644 index 00000000..19c27944 --- /dev/null +++ b/docs/v3.3.0/Updates.md @@ -0,0 +1,95 @@ +# Truvari 3.3 +*In Progress* + +* New utilities `vcf_ranges` and `make_temp_filename` +* New annotations `dpcnt` and `lcr` +* Fixed a bug in `truvari collapse --keep` that prevented the `maxqual` or `common` options from working +* Increased determinism for `truvari collapse` so that in cases of tied variant position the longer allele is returned. If the alleles also have the same length, they are sorted alphabetically by the REF +* New `truvari bench --extend` functionality. See [discussion](https://github.com/ACEnglish/truvari/discussions/99) for details + +# Truvari 3.2 +*Apr 1, 2022* + +* Removed `truvari.copy_entry` for `pysam.VariantRecord.translate` a 10x faster operation +* Faster `truvari collapse` ([@c8b319b](https://github.com/ACEnglish/truvari/commit/c8b319b0e717a9e342f52e4a5e927f154eeb0e4a)) +* When building `MatchResult` between variants with shared start/end positions, we save processing work by skipping haplotype creation and just compare REFs/ALTs directly. +* Updated documentation to reference the paper https://doi.org/10.1101/2022.02.21.481353 +* New `truvari anno density` for identifying regions with 'sparse' and 'dense' overlapping SVs ([details](https://github.com/spiralgenetics/truvari/wiki/anno#truvari-anno-density)) +* Better `bench` genotype reporting with `summary.txt` having a `gt_matrix` of Base GT x Comp GT for all Base calls' best, TP match. +* New `truvari anno bpovl` for intersecting against tab-delimited files ([details](https://github.com/spiralgenetics/truvari/wiki/anno#truvari-anno-bpovl)) +* New `truvari divide` command to split VCFs into independent parts ([details](https://github.com/ACEnglish/truvari/wiki/divide)) +* Replaced `--buffer` parameter with `--minhaplen` for slightly better matching specificity +* Bugfix - `truvari anno trf` no longer duplicates entries spanning multple parallelization regions +* Bugfix - `collapse` MatchId/CollapseId annotation wasn't working +* Bugfixes - from [wwliao](https://github.com/wwliao) ([@4dd9968](https://github.com/ACEnglish/truvari/commit/4dd99683912236f433166889bb0b5667e9fa936d) [@ef2cfb3](https://github.com/ACEnglish/truvari/commit/ef2cfb366b60a5af4671d65d3ed987b08da72227)) +* Bugfixes - Issues [#107](https://github.com/ACEnglish/truvari/issues/107), [#108](https://github.com/ACEnglish/truvari/issues/108) + +# Truvari 3.1 +*Dec 22, 2021* + +* `bench` now annotates FPs by working a little differently. See [[bench|bench#methodology]] for details. +* Recalibrated TruScore and new reciprocal overlap measurement for sequence resolved `INS` ([details](https://github.com/spiralgenetics/truvari/discussions/92)) +* Match objects are now usable via the SDK. See [#94](https://github.com/spiralgenetics/truvari/discussions/94) for an example of using Truvari programmatically +* `file_zipper` VCF iteration strategy (`GenomeTree` -> `RegionVCFIterator`) that improves speed, particularly when using `--includebed` +* `collapse` refactored to use Match object and for prettier code, cleaner output. +* `anno remap` now optionally adds `INFO` field of the location of the top N hits. +* An experimental tool `truvari segment` added to help SV association analysis. +* `vcf2df` now supports pulling `FORMAT` fields from multiple samples. +* `vcf2df` now adds `('_ref', '_alt')`, or `('_ref', '_het', '_hom')` for `INFO,Number=[R|G]` fields, respectively. +* Improved documentation, including http://truvari.readthedocs.io/ for developers. +* Increasing/diversifying test coverage exposed minor bugs which were fixed. +* `bench --no-ref --cSample` bug fixes. +* Minor usability feature implemented in `help_unknown_cmd`. + +# Truvari 3.0 +*Sep 15, 2021* + +As Truvari's adoption and functionality grows, we decided to spend time working on sustainability and performance of the tool. Multiple [Actions](https://github.com/spiralgenetics/truvari/actions) for CI/CD have been added. Many components have been refactored for speed, and other 'cruft' code has been removed. Some of these changes (particularly the switch to using edlib for sequence similarity) affects the results. Therefore, we've bumped to a new major release version. + +* Working on speed improvements +* Added edlib as the default when calculating pctseq_sim, keeping Levenstein as an option (`--use-lev`). +* `truvari bench` summary's gt_precision/gt_recall are replaced by gt_concordance, which is just the percent of TP-comp calls with a concordant genotype. `--no-ref` has better functionality. `--giabreport` is different. +* Added `—keep common` to `truvari collapse`, which allows one to choose to keep the allele with the highest MAC. +* `truvari collapse --hap` wasn't working correctly. The assumptions about the calls being phased wasn't being +properly used (e.g. don't collapse 1|1) and the NumCollapsed was being populated before the single-best +match was chosen. The latter is a reporting problem, but the former had an effect on the results with +~3% of collapsed calls being mis-collapsed. +* `truvari anno trf` is now faster and simpler in its approach and whats reported.. and hopefully more useful. +* `truvari anno grm` has min_size and regions arguments added. +* truv2df has become `truvari vcf2df` where the default is vcf conversion with options to run on a `truvari bench` output directory. It also allows a specific sample to be parsed with `--format` and better Number=A handling. +* NeighId added to `truvari anno numneigh`, which works like bedtools cluster. +* The method af_calc now makes MAC/AC. +* Added 'partial' to `truvari anno remap`. +* Added `truvari anno svinfo`. +* Removed `truvari stats` as `truvari vcf2df` is better and began building [community-driven summaries](https://github.com/spiralgenetics/truvari/discussions/categories/vcf2df-recipes). +* Ubiquitous single version. +* Added a Dockerfile and instructions for making a Truvari docker container. +* Code and repository cleaning. +* Github actions for automated pylint, testing, and releases to pypi. +* Preserving per-version documentation from the wiki in `docs/`. + + +# Truvari 2.1 +*Jan 27, 2021* + +We've expanded and improved Truvari's [annotations](https://github.com/spiralgenetics/truvari/wiki/anno). We've added an [SV "collapsing" tool](https://github.com/spiralgenetics/truvari/wiki/collapse). And we've added a way to [turn VCFs into pandas DataFrames](https://github.com/spiralgenetics/truvari/wiki/truv2df) easily for downstream analysis/QC. + +# Truvari 2.0 +*May 14, 2020* + +After performing a drastic code refactor, we were able to create several helper methods from Truvari's core functionality around SV comparisons and VCF manipulations. This reusable code gave us an opportunity to create tools relevant for SV analysis. + +Truvari now contains multiple subcommands. In addition to the original benchmarking functionality (`truvari bench`), Truvari can generate SV relevant summary statistics, compute consistency of calls within VCFs, and we've begun to develop annotations for SVs. Details on these tools are on the [WIKI](https://github.com/spiralgenetics/truvari/wiki). + +We are committed to continually improving Truvari with the hopes of advancing the study and analysis of structural variation. + +# Truvari 1.3 +*September 25th, 2019* + +Truvari has some big changes. In order to keep up with the o deement of Python 2.7 https://pythonclock.org/ +We're now only supporting Python 3. + +Additionally, we now package Truvari so it and its dependencies can be installed directly. See Installation +below. This will enable us to refactor the code for easier maintenance and reusability. + +Finally, we now automatically report genotype comparisons in the summary stats. \ No newline at end of file diff --git a/docs/v3.3.0/anno.md b/docs/v3.3.0/anno.md new file mode 100644 index 00000000..9593dda1 --- /dev/null +++ b/docs/v3.3.0/anno.md @@ -0,0 +1,434 @@ + +Truvari annotations: + gcpct, gtcnt, trf, grm, repmask, remap, hompct, numneigh, svinfo, bpovl, density, dpcnt, lcr + +# truvari anno gcpct + +This will add an INFO tag `GCPCT` to each element in a VCF of the GC percent of the call's sequence. + +For deletions, this is the GC percent of the reference range of the call. For insertions, the ALT sequence is analyzed. +``` +usage: gcpct [-h] [-i INPUT] [-o OUTPUT] -r REFERENCE + +Annotates GC content of SVs + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -o OUTPUT, --output OUTPUT + Output filename (stdout) + -r REFERENCE, --reference REFERENCE + Reference fasta +``` + +# truvari anno gtcnt +This will add an INFO tag `GTCNT` to each element in a VCF with the count of genotypes found across all samples. The value is a list of Counts of genotypes for the allele across all samples (UNK, REF, HET, HOM). This is most useful for pVCFs. + +``` +usage: gtcnt [-h] [-i INPUT] [-o OUTPUT] + +Annotates GTCounts of alleles + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -o OUTPUT, --output OUTPUT + Output filename (stdout) +``` + +# truvari anno trf +Adds a tandem-repeat annotation to each entry in your VCF. + +This requires the [trf executable](http://tandem.bu.edu/trf/trf.download.html), which can either be in your environment `$PATH` or can be directly pointed to through the command line parameters. This also uses SimpleRepeat tracks over the reference genome (e.g. [`resources/`](https://github.com/spiralgenetics/truvari/tree/develop/resources)). + +First, every SV is parsed and intersected with the SimpleRepeat track. If the SV hits a SimpleRepeat region, the SV will be annotated. Furthermore, we build the haplotype sequence of the alternate allele and the SimpleRepeat region and feed that sequence into tandem repeat finder. We then intersect the repeats TRF found with the repeats found in the SimpleRepeat track intersection. If the same repeat is found in both, we annotate with the TRF information as well as reporting the difference in the number of copies in alternate allele's haplotype sequence via TRFDiff. + +INFO fields added +* TRF - Entry hits a simple repeat region +* TRFDiff - Simple repeat copy difference +* TRFperiod - Period size of the repeat +* TRFcopies - Number of copies aligned with the consensus pattern. +* TRFscore - TRF Alignment score +* TRFentropy - TRF Entropy measure +* TRFrepeat - TRF Repeat found on entry + +``` +usage: trf [-h] [-i INPUT] [-o OUTPUT] [-e EXECUTABLE] [-T TRF_PARAMS] + [-s SIMPLE_REPEATS] [-f REFERENCE] [-m MIN_LENGTH] [-M MAX_LENGTH] + [-t THREADS] [-C CHUNK_SIZE] [--debug] + +Intersect vcf with reference simple repeats and report +how the an alternate allele affects the copies using TRF + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -o OUTPUT, --output OUTPUT + Output filename (stdout) + -e EXECUTABLE, --executable EXECUTABLE + Path to tandem repeat finder (trf409.linux64) + -T TRF_PARAMS, --trf-params TRF_PARAMS + Default parameters to send to trf (3 7 7 80 5 40 500 + -h -ngs) + -s SIMPLE_REPEATS, --simple-repeats SIMPLE_REPEATS + Simple repeats bed + -f REFERENCE, --reference REFERENCE + Reference fasta file + -m MIN_LENGTH, --min-length MIN_LENGTH + Minimum size of entry to annotate (50) + -M MAX_LENGTH, --max-length MAX_LENGTH + Maximum size of sequence to run through trf (10000) + -t THREADS, --threads THREADS + Number of threads to use (48) + -C CHUNK_SIZE, --chunk-size CHUNK_SIZE + Size (in mbs) of reference chunks for parallelization + (1) + --debug Verbose logging +``` + +# truvari anno grm + +For every SV, we create a kmer over the the upstream and downstream reference and alternate breakpoints. +We then remap that kmer to the reference genome and report alignment information. +This does not alter the VCF traditional annotations, but instead will create a pandas +DataFrame and save it to a joblib object. + +There are four queries made per-SV. For both reference (r), alternate (a) we create upstream (up) and downstream (dn) kmers. +So the columns are all prefixed with one of "rup_", "rdn_", "aup_", "adn_". + +In the alignment information per-query, there are three 'hit' counts: +- nhits : number of query hits +- dir_hits : direct strand hit count +- com_hits : compliment strand hit count + +The rest of the alignment information is reported by average (avg), maximum (max), and minimum (min) + +The suffixes are: +- q : mapping quality score of the hits +- ed : edit distance of the hits +- mat : number of matches +- mis : number of mismatches + +For example, "aup_avg_q", is the alternate's upstream breakend kmer's average mapping quality score. + +``` +usage: grm [-h] -i INPUT -r REFERENCE [-o OUTPUT] [-k KMERSIZE] [-m MIN_SIZE] + [-t THREADS] [--debug] + +Maps graph edge kmers with BWA to assess Graph Reference Mappability + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + Input VCF + -r REFERENCE, --reference REFERENCE + BWA indexed reference + -o OUTPUT, --output OUTPUT + Output dataframe (results.jl) + -k KMERSIZE, --kmersize KMERSIZE + Size of kmer to map (50) + -m MIN_SIZE, --min-size MIN_SIZE + Minimum size of variants to map (25) + -t THREADS, --threads THREADS + Number of threads (48) + --debug Verbose logging +``` + +# truvari anno repmask + +``` +usage: repmask [-h] -i INPUT [-o OUTPUT] [-e EXECUTABLE] [-m MIN_LENGTH] + [-M MAX_LENGTH] [-t THRESHOLD] [-p PARAMS] [-T THREADS] + [--debug] + + Wrapper around RepeatMasker to annotate insertion sequences in a VCF + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (None) + -o OUTPUT, --output OUTPUT + Output filename (/dev/stdout) + -e EXECUTABLE, --executable EXECUTABLE + Path to RepeatMasker (RepeatMasker) + -m MIN_LENGTH, --min-length MIN_LENGTH + Minimum size of entry to annotate (50) + -M MAX_LENGTH, --max-length MAX_LENGTH + Maximum size of entry to annotate (50000) + -t THRESHOLD, --threshold THRESHOLD + Threshold for pct of allele covered (0.8) + -p PARAMS, --params PARAMS + Default parameter string to send to RepeatMasker (-pa + {threads} -e hmmer -species human -lcambig -nocut -div + 50 -no_id -s {fasta}) + -T THREADS, --threads THREADS + Number of threads to use (48) + --debug Verbose logging +``` + +# truvari anno remap + +Taking the Allele’s sequence, remap it to the reference and annotate based on the closest alignment. + +![](https://github.com/spiralgenetics/truvari/blob/develop/imgs/remap_example.png) + +``` +usage: remap [-h] [-i INPUT] -r REFERENCE [-o OUTPUT] [-m MINLENGTH] + [-t THRESHOLD] [-d DIST] [--debug] + +Remap VCF'S alleles sequence to the reference to annotate REMAP + +novel - Allele has no hits in reference +tandem - Allele's closest hit is within len(allele) bp of the SV's position +interspersed - Allele's closest hit is not tandem +partial - Allele only has partial hit(s) less than --threshold + +Which alleles and alignments to consider can be altered with: +--minlength - minimum SV length to considred (50) +--dist - For deletion SVs, do not consider alignments that hit within Nbp of the SV's position + (a.k.a. alignments back to the source sequence) (10) +--threshold - Minimum percent of allele's sequence used by alignment to be considered (.8) + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + Input VCF (/dev/stdin) + -r REFERENCE, --reference REFERENCE + BWA indexed reference + -o OUTPUT, --output OUTPUT + Output VCF (/dev/stdout) + -m MINLENGTH, --minlength MINLENGTH + Smallest length of allele to remap (50) + -t THRESHOLD, --threshold THRESHOLD + Threshold for pct of allele covered to consider hit + (0.8) + -d DIST, --dist DIST Minimum distance an alignment must be from a DEL's + position to be considered (10)) + --debug Verbose logging +``` +# truvari anno hompct + +``` +usage: hompct [-h] -i INPUT [-o OUTPUT] [-b BUFFER] [-m MINANNO] [-M MAXGT] + [--debug] + +Calcluate the the Hom / (Het + Hom) of variants in the region of SVs +Requires the VCF to contain SVs beside SNPs/Indels + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + Compressed, indexed VCF to annotate + -o OUTPUT, --output OUTPUT + Output filename (stdout) + -b BUFFER, --buffer BUFFER + Number of base-pairs up/dn-stream to query (5000) + -m MINANNO, --minanno MINANNO + Minimum size of event to annotate + -M MAXGT, --maxgt MAXGT + Largest event size to count for genotyping (1) + --debug Verbose logging +``` + +# truvari anno numneigh + +``` +usage: numneigh [-h] [-i INPUT] [-o OUTPUT] [-r REFDIST] [-s SIZEMIN] + [--passonly] [--debug] + +For every call within size boundaries, +Add NumNeighbors info field of how many calls are within the distance +Add NeighId clustering field in the same chained neighborhood +For example, +-- is a call, refdist is 2 + - - - - - - +nn: 1 2 1 0 1 1 +id: 0 0 0 1 2 2 + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate + -o OUTPUT, --output OUTPUT + Output vcf (stdout) + -r REFDIST, --refdist REFDIST + Max reference location distance (1000) +``` + +# truvari anno svinfo + +Uses `truvari.entry_size` and `truvari.entry_variant_type` on entries >= `args.minsize` to add 'SVLEN' and ‘SVTYPE’ annotations to a VCF’s INFO. + +How SVLEN is determined: +- Starts by trying to use INFO/SVLEN +- If SVLEN is unavailable and ALT field is an SV (e.g. \, \, etc), use abs(vcf.start - vcf.end). The INFO/END tag needs to be available, especially for INS. +- Otherwise, return the size difference of the sequence resolved call using abs(len(vcf.REF) - len(str(vcf.ALT[0]))) + +How SVTYPE is determined: +- Starts by trying to use INFO/SVTYPE +- If SVTYPE is unavailable, infer if entry is a insertion or deletion by looking at the REF/ALT sequence size differences +- If REF/ALT sequences are not available, try to parse the \, \, etc from the ALT column. +- Otherwise, assume 'UNK' + +``` +usage: svinfo [-h] [-i INPUT] [-o OUTPUT] [-m MINSIZE] + +Adds SVTYPE and SVLEN INFO fields + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -o OUTPUT, --output OUTPUT + Output filename (stdout) + -m MINSIZE, --minsize MINSIZE + Minimum size of entry to annotate (50) + -s SIZEMIN, --sizemin SIZEMIN + Minimum variant size to consider for annotation (50) + --passonly Only count calls with FILTER == PASS + --debug Verbose logging +``` + +# truvari anno bpovl + +After turning a tab-delimited annotation file into an IntervalTree, intersect the start/end and overlap of SVs. +The output is a light-weight pandas DataFrame saved with joblib. The columns in the output are: + +- vcf_key : Variant key from `truvari.entry_to_key` +- intersection : Type of intersection between the SV and the annotation + - start_bnd - SV's start breakpoints hits the annotation + - end_bnd - SV's end breakpoint hits the annotation + - overlaps - Annotation's start/end boundaries are completely within the SV + - contains - Annotation's start/end boundaries span the entire SV +- anno_key : Annotation file's line index + +The idea with this tool is to annotate variants against tab-delimited files, especially when there's a 1-to-N variant to annotations. This tool is useful when used in conjunction with `truvari vcf2df` and pandas DataFrames. + +For example, if we have a VCF of SVs and a GTF of genes/gene features from Ensmbl. Any SV may intersect multiple features, which doesn't lend itself well to directly annotating the VCF's INFO. After using `bpovl`, we'll use Truvari to convert the SVs to a DataFrame. + +```bash +truvari anno bpovl -i variants.vcf.gz -a genes.gtf.gz -o anno.jl -p gff +truvari vcf2df variants.vcf.gz variants.jl +``` + +We can then treat the files similar to a database and do queries and joins to report which variants intersect which annotations. + +```python +import joblib +from gtfparse import read_gtf +variants = joblib.load("variants.jl") +genes = read_gtf("genes.gtf.gz") +annos = joblib.load("anno.jl") +to_check = annos.iloc[0] + +print(to_check) +# vcf_key chr20:958486-958487.A +# intersection start_bnd +# anno_key 11 + +print(variants.loc[to_check['vcf_key']]) +# id None +# svtype INS +# ... etc + +print(annos.loc[to_check['anno_key']]) +# seqname chr20 +# source ensembl_havana +# feature exon +# start 958452 +# ... etc +``` + +Similar to tabix, `bpovl` has presets for known file types like bed and gff. But any tab-delimited file with sequence/chromosome, start position, and end position can be parsed. Just set the "Annotation File Arguments" to the 0-based column indexes. For example, a bed file +has arguments `-s 0 -b 1 -e 2 -c #`. + +``` +usage: bpovl [-h] [-i INPUT] -a ANNO -o OUTPUT [--spanmin SPANMIN] [--spanmax SPANMAX] + [-p {bed,gff}] [-c COMMENT] [-s SEQUENCE] [-b BEGIN] [-e END] [-1] + +Creates intersection of features in an annotation file with SVs' breakpoints and overlap + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -a ANNO, --anno ANNO Tab-delimited annotation file + -o OUTPUT, --output OUTPUT + Output joblib DataFrame + --spanmin SPANMIN Minimum span of SVs to annotate (50) + --spanmax SPANMAX Maximum span of SVs to annotate (50000) + +Annotation File Arguments: + -p {bed,gff}, --preset {bed,gff} + Annotation format. This option overwrites -s, -b, -e, -c and -1 (None) + -c COMMENT, --comment COMMENT + Skip lines started with character. (#) + -s SEQUENCE, --sequence SEQUENCE + Column of sequence/chromosome name. (0) + -b BEGIN, --begin BEGIN + Column of start chromosomal position. (1) + -e END, --end END Column of end chromosomal position. (2) + -1, --one-based The position in the anno file is 1-based rather than 0-based. (False) +``` +# truvari anno density +Partitions a `--genome` into `--windowsize` regions and count how many variants overlap. Annotate +regions with no variants as 'sparse' and with greater than or equal to (mean + `--threshold` * standard +deviation) number of variants as 'dense'. Outputs a joblib DataFrame with columns +`chrom, start, end, count, anno`. + +``` +usage: density [-h] -g GENOME [-i INPUT] -o OUTPUT [-m MASK] [-w WINDOWSIZE] [-t THRESHOLD] + +Identify 'dense' and 'sparse' variant windows of the genome + +optional arguments: + -h, --help show this help message and exit + -g GENOME, --genome GENOME + Genome bed file + -i INPUT, --input INPUT + Input VCF (/dev/stdin) + -o OUTPUT, --output OUTPUT + Output joblib DataFrame + -m MASK, --mask MASK Mask bed file + -w WINDOWSIZE, --windowsize WINDOWSIZE + Window size (10000) + -t THRESHOLD, --threshold THRESHOLD + std for identifying 'dense' regions (3) +``` + +# truvari anno dpcnt + +For multi-sample VCFs, it is often useful to have summarized depth (DP) information across samples per-variant. This adds a `INFO/DPCNT` with counts of how many samples have `FORMAT/DP` for each of the user-defined bins. Bins are incremented using `bisect` e.g. `pos = bisect.bisect(bins, dp); bins[pos] += 1; + +``` +usage: dpcnt [-h] [-i INPUT] [-b BINS] [-o OUTPUT] + +Quick utility to count how many samples have >= Nx coverage per-variant + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -b BINS, --bins BINS Coverage bins to bisect left the counts (0,5,10,15) + -o OUTPUT, --output OUTPUT + Output filename (stdout) +``` + +# truvari anno lcr + +``` +usage: lcr [-h] [-i INPUT] [-o OUTPUT] + +Annotate low complexity region entropy score for variants +Credit: https://jszym.com/blog/dna_protein_complexity/ + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + VCF to annotate (stdin) + -o OUTPUT, --output OUTPUT + Output filename (stdout) +``` \ No newline at end of file diff --git a/docs/v3.3.0/bench.md b/docs/v3.3.0/bench.md new file mode 100644 index 00000000..5424360e --- /dev/null +++ b/docs/v3.3.0/bench.md @@ -0,0 +1,239 @@ + +Quick start +=========== +Run this command where base is your 'truth set' SVs and comp is the comparison set of SVs. +```bash +truvari bench -b base_calls.vcf -c comp_calls.vcf -f reference.fa -o output_dir/ +``` + +Outputs +======= +Truvari bench creates an output directory with the following files. + + + + + + + + + +
FileDescription
tp-call.vcfAnnotated true positive calls from the comparison VCF
tp-base.vcfAnnotated true positive calls form the base VCF
fp.vcfFalse positive calls from comparison
fn.vcfFalse negative calls from base
summary.txtJson output of performance stats
log.txtRun's logging output
giab_report.txt(optional) Summary of GIAB benchmark calls. See "Using the GIAB Report" below.
giab.jl(optional) DataFrame of benchmark results.
+ +summary.txt +=========== +The following stats are generated for benchmarking your call set and written to summary.txt as a json dump. + + + + + + + + + + + + + + + + + +
Metric Definition
TP-base Number of matching calls from the base vcf
TP-call Number of matching calls from the comp vcf
FP Number of non-matching calls from the comp vcf
FN Number of non-matching calls from the base vcf
precision TP-call / (TP-call + FP)
recall TP-base / (TP-base + FN)
f1 2 * ((recall * precision) / (recall + precision))
base cnt Number of calls in the base vcf
call cnt Number of calls in the comp vcf
TP-call_TP-gt TP-call with genotype match
TP-call_FP-gt TP-call without genotype match
TP-base_TP-gt TP-base with genotype match
TP-base_FP-gt TP-base without genotype match
gt_concordance TP-call_TP-gt / (TP-call_TP-gt + TP-call_FP-gt)
gt_matrix Base GT x Comp GT Matrix of all Base calls' best, TP match
+ +Matching Parameters +=================== +Picking matching parameters can be more of an art than a science. It really depends on the precision of your callers and the tolerance you wish to allow them such that it is a fair comparison. + +For example, depth of coverage callers (such as CNVnator) will have very 'fuzzy' boundaries, and don't report the exact deleted sequence but only varying regions. So thresholds of `pctsim=0`, `pctsize=.5`, `pctovl=.5`, `refdist=1000` may seem fair. + +[BioGraph](https://github.com/spiralgenetics/biograph) and many long-read callers report precise breakpoints and full alternate allele sequences. When benchmarking those results, we want to ensure our accuracy by using the stricter default thresholds. + +If you're still having trouble picking thresholds, it may be beneficial to do a few runs of Truvari bench over different values. Start with the strict defaults and gradually increase the leniency. From there, you can look at the performance metrics and manually inspect differences between the runs to find out what level you find acceptable. Truvari is meant to be flexible for comparison. More importantly, Truvari helps one clearly report the thresholds used for reproducibility (see the json at the top of your log.txt). + +Here is a rundown of each matching parameter. + + + + + + +
ParameterDefaultDefinition
refdist 500 Maximum distance comparison calls must be within from base call's start/end
pctsim 0.7 Edit distance ratio between the REF/ALT haplotype sequences of base and comparison call. See "Comparing Haplotype Sequences of Variants" below.
pctsize 0.7 Ratio of min(base_size, comp_size)/max(base_size, comp_size)
pctovl 0.0 Ratio of two calls' (overlapping bases)/(longest span)
typeignore False Types don't need to match to compare calls.
+ +Matching Parameter Diagrams +=========================== +Below are matching parameter diagrams to illustrate (approximately) how they work. + +``` + █ = Deletion ^ = Insertion + +--refdist REFDIST (500) + Max reference location distance + + ACTGATCATGAT + |--████--| + █████ + + Calls are within reference distance of 2 + +--pctsize PCTSIZE (0.7) + Min pct allele size similarity + + ACTGATCATGA sizes + █████ -> 5bp + ████ -> 4bp + + variants have 0.8 size similarity + + +--pctovl PCTOVL (0.0) + Min pct reciprocal overlap + + ACTGATCATGA ranges + █████ [2,7) + ████ [4,8) + + variants have 0.6 reciprocial overlap + + +--pctsim PCTSIM (0.7) + Min percent allele sequence similarity + + A-CTG-ACTG + ^ ^ haplotypes + | └ACTG -> CTGACTGA + └CTGA -> CTGACTGA + + haplotypes have 100% sequence similarity +``` + +Comparing VCFs without sequence resolved calls +============================================== + +If the base or comp vcfs do not have sequence resolved calls, simply set `--pctsim=0` to turn off +sequence comparison. The `--reference` does not need to be set when not using sequence comparison. + +Difference between --sizemin and --sizefilt +=========================================== + +`--sizemin` is the minimum size of a base call to be considered. + +`--sizefilt` is the minimum size of a comparison call that will be matched to base calls. It should +be less than `sizemin` for edge case variants. + +For example: `sizemin` is 50 and `sizefilt` is 30. A 50bp base call is 98% similar to a 49bp comparison +call at the same position. + +These two calls should be considered matching. If we instead removed comparison calls less than `sizemin`, +we'd incorrectly classify the 50bp base call as a false negative. + +This does have the side effect of artificially inflating specificity. If that same 49bp call in the +above were below the similarity threshold, it would not be classified as a FP due to the `sizemin` +threshold. So we're giving the call a better chance to be useful and less chance to be detrimental +to final statistics. + +Definition of annotations added to vcfs +========================================== + + + + + + + + + + + + +
Anno Definition
TruScore Truvari score for similarity of match. `((pctsim + pctsize + pctovl) / 3 * 100)`
PctSeqSimilarity Pct sequence similarity between this variant and its closest match
PctSizeSimilarity Pct size similarity between this variant and its closest match
PctRecOverlap Percent reciprocal overlap percent of the two calls
StartDistance Distance of the base call's start from comparison call's start
EndDistance Distance of the base call's end from comparison call's end
SizeDiff Difference in size of base and comp calls
GTMatch Base/comp calls' Genotypes match
MatchId Id to help tie base/comp calls together {chunkid}.{baseid}.{compid}
Multi Call is false due to non-multimatching
+ +See [[MatchIds wiki|MatchIds]] for details. + +Using the GIAB Report +===================== + +When running against the GIAB SV benchmark (link below), you can automatically add a text `giab_report.txt` to the output directory containing calls summarized by the GIAB VCF's SVTYPE, SVLEN, Technology, and Repeat annotations. This also adds a DataFrame `giab.jl` (similar to running `truvari vcf2df --bench-dir`). + +See the [Recipes Discussions](https://github.com/spiralgenetics/truvari/discussions/categories/vcf2df-recipes) on how make interesting summaries and plots. + +While Truvari can use other benchmark sets, this formatted report currently only works with GIAB SV v0.5 and v0.6. Work +will need to be done to ensure Truvari can parse future GIAB SV releases. + +[GIAB v0.6 Download Link](https://bit.ly/2SlWYbB) + +ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/analysis/NIST_SVs_Integration_v0.6/ + +Include Bed & VCF Header Contigs +================================ + +If an `--includebed` is provided, only base and comp calls contained within the defined regions are used +for comparison. This is similar to pre-filtering your base/comp calls using: + +```bash +(zgrep "#" my_calls.vcf.gz && bedtools intersect -u -a my_calls.vcf.gz -b include.bed) | bgzip > filtered.vcf.gz +``` + +with the exception that Truvari requires the start and the end to be contained in the same includebed region +whereas `bedtools intersect` does not. + +If an `--includebed` is not provided, the comparison is restricted to only the contigs present in the base VCF +header. Therefore, any comparison calls on contigs not in the base calls will not be counted toward summary +statistics and will not be present in any output vcfs. + +Extending an Include Bed +======================== + +The option `--extend` extends the regions of interest (set in `--includebed` argument) by the given number of bases on each side, allowing truth set variants to match call set variants that are just outside of the original region. If a call set variant is in the extended regions it can potentially match a truth set variant that is in the original regions turning it to TP, but call set variants in the extended regions that don't have a match are not counted as FP. This strategy is similar to the one implemented for size matching - only the truth set variants longer than sizemin (equal to 50 by default) are considered, but they are allowed to match shorter comparison set variants of size sizefilt (30 by default) or longer. + +See this [discussion](https://github.com/ACEnglish/truvari/discussions/99)for details. + +Comparing Haplotype Sequences of Variants +========================================= + +While many SV overlapping approaches match changes within regions with metrics such as reciprocal overlap and +start/end distances, few account for the possibility to represent the same sequence change in multiple ways. + +For example, consider a tandem repeat expansion of the reference sequence 'AB'. Here, we'll represent the 'insertion' +sequence as lower-case 'ab', though it should be considered equivalent to 'AB'. Three equally valid descriptions of this +variant would be: + +```text +#POS INS Haplotype + 0 ab abAB + 1 ba AbaB + 2 ab ABab +``` + +Therefore, to compare the sequence similarity, Truvari builds the haplotypes over the range of a pair of calls' +`min(starts):max(ends)` before making the the sequence change introduced by the variants. In python, this line +looks like: + +``` python +hap1_seq = ref.get_seq(a1_chrom, start + 1, a1_start).seq + a1_seq + ref.get_seq(a1_chrom, a1_end + 1, end).seq +``` + +Where `a1_seq1` is the longer of the REF or ALT allele. + +Future versions of Truvari may take this concept further to reconstruct haplotypes based on phasing information +between variants in order to allow for more flexibility in complex multi-allelic representations. + +Methodology +=========== +Here is a high-level pseudocode description of the steps Truvari bench conducts to compare the two VCFs. +``` +* zip the Base and Comp calls together in sorted order +* create chunks of all calls overlapping within ±`--chunksize` basepairs +* make a |BaseCall| x |CompCall| match matrix for each chunk +* build a Match for each call pair in the chunk - annotate as TP if >= all thresholds +* if the chunk has no Base or Comp calls +** return them all as FNs/FPs +* if multimatch: +** return the max of each row (base) and of each column (call) from the match matrix +* else: +** ravel and sort the match matrix +** return the first use of each call in its current state (True or False) +** return the second use of each call with state=False and set Multi=True +``` +![](https://github.com/spiralgenetics/truvari/blob/develop/imgs/TruvariBenchMethod.png) \ No newline at end of file diff --git a/docs/v3.3.0/collapse.md b/docs/v3.3.0/collapse.md new file mode 100644 index 00000000..a9d236e5 --- /dev/null +++ b/docs/v3.3.0/collapse.md @@ -0,0 +1,147 @@ +`collapse` is Truvari's approach to SV merging. After leveraging `bcftools` to merge VCFs, `truvari collapse` can then iterate over the calls and create clusters of SVs that match over the [provided thresholds](https://github.com/spiralgenetics/truvari/wiki/bench#matching-parameters). This is also useful when removing potentially redundant calls within a single sample. + +Example +======= +To start, we merge multiple VCFs (each with their own sample) via: +```bash +bcftools merge -m none one.vcf two.vcf | bgzip > merge.vcf +``` + +This will `paste` SAMPLE information between vcfs when calls have the exact same chrom, pos, ref, and alt. +For example, consider two vcfs: + + >> one.vcf: + chr1 1 ... GT 0/1 + chr1 5 ... GT 1/1 + >> two.vcf: + chr1 1 ... GT 1/1 + chr1 7 ... GT 0/1 + +`bcftools merge` creates: + + >> merge.vcf: + chr1 1 ... GT 0/1 1/1 + chr1 5 ... GT 1/1 ./. + chr1 7 ... GT ./. 0/1 + +This VCF can then be collapsed to allow 'fuzzier' matching than the exact merge just performed. + +```bash +truvari collapse -i merge.vcf.gz -o truvari_merge.vcf -c truvari_collapsed.vcf -f /path/to/reference.fa +``` + +For example, if we collapsed our example merge.vcf by matching any calls within 3bp, we'd create: + + >> truvari_merge.vcf + chr1 1 ... GT 0/1 1/1 + chr1 5 ... GT 1/1 0/1 + >> truvari_collapsed.vcf + chr1 7 ... GT ./. 0/1 + +--choose behavior +================= +When collapsing, the default `--choose` behavior is to take the first variant from a cluster to +be written to the output while the others will be placed in the collapsed output. +Other choosing options are `maxqual` (the call with the highest quality score) or `common` (the call with the highest minor allele count). + +Samples with no genotype information in the kept variant will be filled by the first +collapsed variant containing genotype information. + +--hap mode +========== +When using `--hap`, we assume phased variants from a single individual. Only the +single best matching call from the other haplotype will be collapsed, +and the consolidated genotype will become 1/1 + +For example, if we collapse anything at the same position: + + chr1 1 .. GT 0|1 + chr1 1 .. GT 1|0 + chr1 2 .. GT 1|0 + +will become: + + chr1 1 .. GT 1/1 + chr1 2 .. GT 1|0 + +--chain mode +============ +When using `--chain` mode, instead of collapsing all variants which the first variant, +we'll collapse all variants in a matching set together. +For example, if we have + + chr1 5 .. + chr1 7 .. + chr1 9 .. + +When we collapse anything within 2bp of each other, without `--chain`, we output: + + chr1 5 .. + chr1 9 .. + +With `--chain`, we would collapse `chr1 9` as well, producing + + chr1 5 .. + +Annotations +=========== +`collapse` produces two files. The output file has kept variants along with unanalyzed (< sizemin) variants. The collapsed file contains the variants that were collapsed into the kept variants. + +The output file has only two annotations added to the `INFO`. +- `CollapseId` - the identifier of the variant when comparing to the collapse outputs. +- `NumCollapsed` - the number of variants collapsed into this variant + +The collapsed file has all of the annotations added by [[bench|bench#definition-of-annotations-added-to-tp-vcfs]]. Note that `MatchId` is tied to the output file's `CollapseId`. See [MatchIds](https://github.com/spiralgenetics/truvari/wiki/MatchIds) for details. + +``` +usage: collapse [-h] -i INPUT [-o OUTPUT] [-c COLLAPSED_OUTPUT] [-f REFERENCE] + [-k {first,maxqual,common}] [--debug] [-r REFDIST] [-p PCTSIM] + [-B BUFFER] [-P PCTSIZE] [-O PCTOVL] [-t] [--use-lev] [--hap] + [--chain] [--null-consolidate NULL_CONSOLIDATE] [-s SIZEMIN] + [-S SIZEMAX] [--passonly] + +Structural variant collapser + +Will collapse all variants within sizemin/max that match over thresholds +All variants outside size boundaries will be placed into the output + +optional arguments: + -h, --help show this help message and exit + -i INPUT, --input INPUT + Comparison set of calls + -o OUTPUT, --output OUTPUT + Output vcf (stdout) + -c COLLAPSED_OUTPUT, --collapsed-output COLLAPSED_OUTPUT + Where collapsed variants are written (collapsed.vcf) + -f REFERENCE, --reference REFERENCE + Indexed fasta used to call variants + -k {first,maxqual,common}, --keep {first,maxqual,common} + When collapsing calls, which one to keep (first) + --debug Verbose logging + --hap Collapsing a single individual's haplotype resolved calls (False) + --chain Chain comparisons to extend possible collapsing (False) + --null-consolidate NULL_CONSOLIDATE + Comma separated list of FORMAT fields to consolidate into the kept entry by taking the first non-null from all + neighbors (None) + +Comparison Threshold Arguments: + -r REFDIST, --refdist REFDIST + Max reference location distance (500) + -p PCTSIM, --pctsim PCTSIM + Min percent allele sequence similarity. Set to 0 to ignore. (0.95) + -B BUFFER, --buffer BUFFER + Percent of the reference span to buffer the haplotype sequence created + -P PCTSIZE, --pctsize PCTSIZE + Min pct allele size similarity (minvarsize/maxvarsize) (0.95) + -O PCTOVL, --pctovl PCTOVL + Minimum pct reciprocal overlap (0.0) for DEL events + -t, --typeignore Variant types don't need to match to compare (False) + --use-lev Use the Levenshtein distance ratio instead of edlib editDistance ratio (False) + +Filtering Arguments: + -s SIZEMIN, --sizemin SIZEMIN + Minimum variant size to consider for comparison (50) + -S SIZEMAX, --sizemax SIZEMAX + Maximum variant size to consider for comparison (50000) + --passonly Only consider calls with FILTER == PASS +``` \ No newline at end of file diff --git a/docs/v3.3.0/consistency.md b/docs/v3.3.0/consistency.md new file mode 100644 index 00000000..b8ccda5c --- /dev/null +++ b/docs/v3.3.0/consistency.md @@ -0,0 +1,74 @@ + +In addition to looking at performance of a single set of variation against a baseline, one may wish to measure the consistency between multiple sets of variation. The tool `truvari consistency` can automatically create that result. + +Running +======= + +``` +usage: consistency [-h] VCFs [VCFs ...] + +Over multiple vcfs, calculate their intersection/consistency. + +Calls will match between VCFs if they have a matching key of: + CHROM:POS ID REF ALT + +positional arguments: + VCFs VCFs to intersect + +optional arguments: + -h, --help show this help message and exit +``` +Example +======= + +```bash +truvari consistency fileA.vcf fileB.vcf fileC.vcf +``` + +Matching Entries +================ + +VCF entries will be considered matching if and only if they have an exact same key of `CHROM:POS ID REF ALT`. Because of this stringency, it is recommend that you compare the tp-base.vcf or fn.vcf results from each individual VCF's Truvari output. + +Output Report +============= + +Below is an example report: + +```text +# +# Total 5534 calls across 3 VCFs +# +#File NumCalls +fileA.vcf 4706 +fileB.vcf 4827 +fileC.vcf 4882 +# +# Summary of consistency +# +#VCFs Calls Pct +3 3973 71.79% +2 935 16.90% +1 626 11.31% +# +# Breakdown of VCFs' consistency +# +#Group Total TotalPct PctOfFileCalls +111 3973 71.79% 84.42% 82.31% 81.38% +011 351 6.34% 7.27% 7.19% +101 308 5.57% 6.54% 6.31% +110 276 4.99% 5.86% 5.72% +001 250 4.52% 5.12% +010 227 4.10% 4.70% +100 149 2.69% 3.17% +``` + +At the top we see that we compared 5,534 unique variants between the 3 files, with fileC.vcf having the most calls at 4,882. + +The "Summary of consistency" shows us that 3,973 (71.79%) of all the calls are shared between the 3 VCFs, while 626 (11.31%) are only found in one of the VCFs. + +Reading the "Breakdown of VCFs' consistency", a `Group` is a unique key for presence (1) or absence (0) of a call within each of the listed `#Files`. For example: `Group 111` is calls present in all VCFs; `Group 011` is calls present in only the 2nd and 3rd VCFs (i.e. fileB.vcf and fileC.vcf). + +We see that `Group 101` has calls belonging to the 1st and 3rd `#Files` (i.e. fileA.vcf and fileC.vcf). This group has a total of 308 calls that intersect, or 5.57% of all calls in all VCFs. This 308 represents 6.54% of calls in fileA.vcf and 6.31% of calls in fileC.vcf. + +Finally, we see that fileA.vcf has the least amount of calls unique to it on the `Group 100` line. \ No newline at end of file diff --git a/docs/v3.3.0/divide.md b/docs/v3.3.0/divide.md new file mode 100644 index 00000000..4cedd268 --- /dev/null +++ b/docs/v3.3.0/divide.md @@ -0,0 +1,39 @@ +Divide a VCF into independent parts. + +Unfortunately, `pysam.VariantRecord` objects aren't pickle-able. This means that if we wanted to have Truvari leverage python's multiprocessing we'd need to make a custom VCF parser. However, the command `truvari divide` allows us to take an input VCF and divide it into multiple independent parts which can the be processed over multiple processes. + +`truvari divide` works by parsing a VCF and splitting it into multiple, smaller sub-VCFs. If any variants are within `--buffer` base-pairs, they're output to the same sub-VCF. This allows variants in the same region which would need to be compared to one-another (see `--refdist`) to stay in the same sub-VCF. The `--min` parameter allows us to control the minimum number of variants per sub-VCF so that we don't make too many tiny VCFs. Once the sub-VCFs are created, we can process each independently through whatever truvari command. + +For example, let's say we want to run `truvari collapse` on a very large VCF with many variants and many samples. First, we divide the VCF: + +```bash +truvari divide big_input.vcf.gz sub_vcfs_directory/ +``` + +Inside of `sub_vcfs_directory/` we'll have multiple VCFs, which we can process with a simple script + +```bash +NJOBS=$(nproc) # use all processors by default +mkdir -p output_vcfs/ +mkdir -p collap_vcfs/ +mkdir -p logs/ + +for in_vcf in sub_vcfs_directory/*.vcf.gz +do + # Setup file names + base_name=$(basename $in_vcf) + base_name=${base_name%.vcf.gz} + output_name=output_vcfs/${base_name}.vcf + collap_name=collap_vcfs/${base_name}.vcf + log_name=logs/${base_name}.log + # Run the command and send it to the background + truvari collapse -i $in_vcf -o $output_name -c $collap_name -f reference.fa &> logs/${log_name}.log & + # If too many jobs are running, wait for one to finish + while [ $( jobs | wc -l ) -ge ${NJOBS} ] + do + sleep 5 + done +done +``` + +Obviously the logs and `while` loop are tricks for running on a single machine. If you have access to a cluster, I'm sure you can imagine how to create/submit the commands. \ No newline at end of file diff --git a/docs/v3.3.0/segment.md b/docs/v3.3.0/segment.md new file mode 100644 index 00000000..99514df0 --- /dev/null +++ b/docs/v3.3.0/segment.md @@ -0,0 +1,18 @@ +Segmentation: Normalization of SVs into disjointed genomic regions + +For SVs with a span in the genome (currently only DELs), split the overlaps into disjointed regions. This is an experimental tool that explores the possibility of assisting SV association analysis. + +This tool adds an INFO field `SEGCNT` with holds the number of SVs overlapping the newly reported region. It also adds a FORMAT field `SEG`, which is the 'allele coverage' per-sample. For example, if a sample has two overlapping heterozygous deletions, the shared region will have `SEG=2`. If the two deletions were homozygous then `SEG=4`. + +In the below example, the new annotations would be: + +| Region | INFO/SEGCNT | S1/SEG | S2/SEG | S3/SEG | +|--------|-------------|--------|--------|--------| +| A | 1 | 2 | 0 | 0 | +| B | 2 | 2 | 1 | 0 | +| C | 3 | 2 | 2 | 2 | +| D | 2 | 2 | 1 | 0 | +| E | 1 | 0 | 1 | 0 | + +![](https://github.com/spiralgenetics/truvari/blob/develop/imgs/segment_example.png) + diff --git a/docs/v3.3.0/vcf2df.md b/docs/v3.3.0/vcf2df.md new file mode 100644 index 00000000..cba5c8a4 --- /dev/null +++ b/docs/v3.3.0/vcf2df.md @@ -0,0 +1,73 @@ +We enjoy using [pandas](https://pandas.pydata.org/)/[seaborn](https://seaborn.pydata.org/) for python plotting, so we've made the command `truvari vcf2df`. This will turn a VCF into a pandas DataFrame and save it to a file using joblib. The resulting DataFrame will always have the columns: +* id : VCF column ID +* svtype : SVTYPE as determined by `truvari.entry_variant_type` +* svlen : SVLEN as determined by `truvari.entry_size` +* szbin : SVLEN's size bin as determined by `truvari.get_sizebin` +* qual : VCF column QUAL +* filter : VCF column FILTER +* is_pass : boolean of if the filter is empty or PASS + +Additionally, the DataFrame is assigned an index of a description of the variant `CHROM:START-STOP.ALT`. This enables operations such as `pandas.DataFrame.join` to assist set operations on variants. + +Optionally, `vcf2df` can attempt to pull `INFO` and `FORMAT` fields from the VCF and put each field into the DataFrame as a new column. For FORMAT fields, the VCF header definition's `Number` is considered and multiple columns may be added. For example, the `AD` field, typically holding Allele Depth has `Number=A`, indicating that there will be one value for each allele. Truvari assumes that all VCFs hold one allele per-line, so there are only 2 alleles described per-line, the reference and alternate allele. Therefore, two columns are added to the DataFrame, `AD_ref` and `AD_alt` corresponding to the 0th and 1st values from the AD field's list of values. Similarity, for PL (genotype likelihood) with `Number=G`, there's three values and columns are created named `PL_ref`, `PL_het`, `PL_hom`. + +After you've created your benchmarking results with `truvari bench`, you'll often want to plot different views of your results. `vcf2df --bench-dir` can parse a truvari output directory's multiple VCF files and add a 'state' column +* state : The truvari state assigned to the variant + * tpbase : Parsed from the tp-base.vcf + * tp : Parsed from the tp-call.vcf + * fp : Parsed from the fp.vcf + * fn : Parsed from the fn.vcf + +The created DataFrame is saved into a joblib file, which can then be plotted as simply as: +```python +import joblib +import seaborn as sb +import matplotlib.pyplot as plt + +data = joblib.load("test.jl") +p = sb.countplot(data=data[data["state"] == 'tp'], x="szbin", hue="svtype", hue_order=["DEL", "INS"]) +plt.xticks(rotation=45, ha='right') +p.set(title="True Positives by svtype and szbin") +``` +![](https://github.com/spiralgenetics/truvari/blob/develop/imgs/truv2df_example.png) + +This enables concatenation of Truvari results across multiple benchmarking experiments for advanced comparison. For example, imagine there's multiple parameters used for SV discovery over multiple samples. After running `truvari bench` on each of the results with the output directories named to `params/sample/` and each converted to DataFrames with `truvari vcf2df`, we can expand/concatenate the saved joblib DataFrames with: + +```python +import glob +import joblib +import pandas as pd + +files = glob.glob("*/*/data.jl") +dfs = [] +for f in files: + params, sample, frame = f.split('/') + d = joblib.load(f) + d["params"] = params + d["sample"] = sample + dfs.append(d) +df = pd.concat(dfs) +joblib.dump(df, "results.jl") +``` + +``` +usage: vcf2df [-h] [-b] [-i] [-f] [-s SAMPLE] [-m] [-S] [--debug] VCF JL + +Takes a vcf and creates a data frame. Can parse a bench output directory + +positional arguments: + VCF VCF to parse + JL Output joblib to save + +optional arguments: + -h, --help show this help message and exit + -b, --bench-dir Input is a truvari bench directory + -i, --info Attempt to put the INFO fields into the dataframe + -f, --format Attempt to put the FORMAT fileds into the dataframe + -s SAMPLE, --sample SAMPLE + SAMPLE name to parse when building columns for --format + -m, --multisample Parse multiple samples. Splits -s by comma. Sample column names will be flattened + -S, --skip-compression + Skip the attempt to optimize the dataframe's size + --debug Verbose logging +``` \ No newline at end of file diff --git a/repo_utils/test_files/add_dp.py b/repo_utils/test_files/add_dp.py new file mode 100644 index 00000000..fc76ba8b --- /dev/null +++ b/repo_utils/test_files/add_dp.py @@ -0,0 +1,13 @@ +import pysam +import random +v = pysam.VariantFile("multi.vcf.gz") +n_header = v.header.copy() +n_header.add_line("##FORMAT=") +n_header.add_line("##FORMAT=") +o = pysam.VariantFile("/dev/stdout", 'w', header=n_header) +for entry in v: + entry.translate(n_header) + for samp in entry.samples: + entry.samples[samp]["AD"] = (random.randint(5, 25), random.randint(5, 25)) + entry.samples[samp]["DP"] = sum(entry.samples[samp]["AD"]) + o.write(entry) diff --git a/repo_utils/test_files/answer_key/anno_answers.vcf.gz b/repo_utils/test_files/answer_key/anno_answers.vcf.gz index 5a2ded5a..537a0c2e 100644 Binary files a/repo_utils/test_files/answer_key/anno_answers.vcf.gz and b/repo_utils/test_files/answer_key/anno_answers.vcf.gz differ diff --git a/repo_utils/test_files/answer_key/anno_answers.vcf.gz.tbi b/repo_utils/test_files/answer_key/anno_answers.vcf.gz.tbi index 439765fb..4a38adf4 100644 Binary files a/repo_utils/test_files/answer_key/anno_answers.vcf.gz.tbi and b/repo_utils/test_files/answer_key/anno_answers.vcf.gz.tbi differ diff --git a/repo_utils/test_files/answer_key/bench13_extend/fn.vcf b/repo_utils/test_files/answer_key/bench13_extend/fn.vcf new file mode 100644 index 00000000..56bb037d --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/fn.vcf @@ -0,0 +1,53 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H1.fa.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H2.fa.gz.vcf.gz; Date=Thu Jul 22 20:43:41 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=-1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.1.0;Multi GT:PL:DP 1/0:4,8,6:32,9 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501;PctSeqSimilarity=0.722973;PctSizeSimilarity=0.512974;PctRecOverlap=0.512974;SizeDiff=244;StartDistance=-64;EndDistance=-64;TruScore=58;MatchId=8.0.2 GT:PL:DP 0/1:5,9,1:7,43 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.883495;PctSizeSimilarity=0.511628;PctRecOverlap=0;SizeDiff=-63;StartDistance=262;EndDistance=262;GTMatch;TruScore=46;MatchId=8.2.1 GT:PL:DP 0/1:6,1,9:20,25 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465;PctSeqSimilarity=0.151976;PctSizeSimilarity=0.2;PctRecOverlap=0.202151;SizeDiff=372;StartDistance=71;EndDistance=-22;TruScore=18;MatchId=9.0.0 GT:PL:DP 1/0:4,8,7:50,48 diff --git a/repo_utils/test_files/answer_key/bench13_extend/fp.vcf b/repo_utils/test_files/answer_key/bench13_extend/fp.vcf new file mode 100644 index 00000000..271aedc1 --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/fp.vcf @@ -0,0 +1,52 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h1-un.arrow-p1.fasta.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h2-un.arrow-p1.fasta.gz.vcf.gz; Date=Thu Jul 22 20:41:33 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/unused_samples/grch38/HG00733/exact.vcf.gz; Date=Mon Aug 16 16:57:27 2021 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00733 +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0.1;Multi GT 0/1 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257;PctSeqSimilarity=0.722973;PctSizeSimilarity=0.512974;PctRecOverlap=0.512974;SizeDiff=244;StartDistance=-64;EndDistance=-64;TruScore=58;MatchId=8.0.2 GT 1/0 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129;PctSeqSimilarity=0.883495;PctSizeSimilarity=0.511628;PctRecOverlap=0;SizeDiff=-63;StartDistance=262;EndDistance=262;GTMatch;TruScore=46;MatchId=8.2.1 GT 0/1 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.455782;PctSizeSimilarity=0.292035;PctRecOverlap=0.295154;SizeDiff=-160;StartDistance=0;EndDistance=0;GTMatch;TruScore=34;MatchId=8.2.3;Multi GT 0/1 diff --git a/repo_utils/test_files/answer_key/bench13_extend/log.txt b/repo_utils/test_files/answer_key/bench13_extend/log.txt new file mode 100644 index 00000000..bc2a6dbe --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/log.txt @@ -0,0 +1,67 @@ +2022-05-16 12:27:07,999 [INFO] Running /mmfs1/groups/res_data/active/bnoyvert/git/truvari-github/truvari/truvari/__main__.py bench -b repo_utils/test_files/input1.vcf.gz -c repo_utils/test_files/input3.vcf.gz -f repo_utils/test_files/reference.fa -o test_results/bench13_extend/ --includebed repo_utils/test_files/include.bed --extend 500 +2022-05-16 12:27:08,000 [INFO] Params: +{ + "base": "repo_utils/test_files/input1.vcf.gz", + "comp": "repo_utils/test_files/input3.vcf.gz", + "output": "test_results/bench13_extend/", + "reference": "repo_utils/test_files/reference.fa", + "giabreport": false, + "debug": false, + "prog": false, + "refdist": 500, + "pctsim": 0.7, + "minhaplen": 50, + "pctsize": 0.7, + "pctovl": 0.0, + "typeignore": false, + "use_lev": false, + "chunksize": 1000, + "gtcomp": false, + "bSample": null, + "cSample": null, + "sizemin": 50, + "sizefilt": 30, + "sizemax": 50000, + "passonly": false, + "no_ref": false, + "includebed": "repo_utils/test_files/include.bed", + "extend": 500, + "multimatch": false +} +2022-05-16 12:27:08,002 [INFO] Truvari version: 3.3.0-dev +2022-05-16 12:27:08,007 [INFO] Including 11 bed regions +2022-05-16 12:27:08,008 [INFO] Found 1 chromosomes with overlapping regions +2022-05-16 12:27:08,008 [INFO] Extending the regions by 500 bases on each side +2022-05-16 12:27:08,009 [INFO] After region extension found 1 chromosomes with overlapping regions. Merged the overlaps +2022-05-16 12:27:08,084 [INFO] Zipped 2050 variants. Counter({'base': 1130, 'comp': 920}) +2022-05-16 12:27:08,084 [INFO] 11 chunks of 2050 variants. Counter({'__filtered': 2025, 'comp': 15, 'base': 10}) +2022-05-16 12:27:08,085 [INFO] Stats: { + "TP-base": 6, + "TP-call": 6, + "FP": 4, + "FN": 4, + "precision": 0.6, + "recall": 0.6, + "f1": 0.6, + "base cnt": 10, + "call cnt": 10, + "TP-call_TP-gt": 3, + "TP-call_FP-gt": 3, + "TP-base_TP-gt": 3, + "TP-base_FP-gt": 3, + "gt_concordance": 0.5, + "gt_matrix": { + "(1, 1)": { + "(1, 0)": 1, + "(1, 1)": 2 + }, + "(0, 1)": { + "(1, 1)": 1, + "(1, 0)": 1 + }, + "(1, 0)": { + "(1, 0)": 1 + } + } +} +2022-05-16 12:27:08,091 [INFO] Finished bench diff --git a/repo_utils/test_files/answer_key/bench13_extend/summary.txt b/repo_utils/test_files/answer_key/bench13_extend/summary.txt new file mode 100644 index 00000000..bd8ecb7a --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/summary.txt @@ -0,0 +1,29 @@ +{ + "TP-base": 6, + "TP-call": 6, + "FP": 4, + "FN": 4, + "precision": 0.6, + "recall": 0.6, + "f1": 0.6, + "base cnt": 10, + "call cnt": 10, + "TP-call_TP-gt": 3, + "TP-call_FP-gt": 3, + "TP-base_TP-gt": 3, + "TP-base_FP-gt": 3, + "gt_concordance": 0.5, + "gt_matrix": { + "(1, 1)": { + "(1, 0)": 1, + "(1, 1)": 2 + }, + "(0, 1)": { + "(1, 1)": 1, + "(1, 0)": 1 + }, + "(1, 0)": { + "(1, 0)": 1 + } + } +} \ No newline at end of file diff --git a/repo_utils/test_files/answer_key/bench13_extend/tp-base.vcf b/repo_utils/test_files/answer_key/bench13_extend/tp-base.vcf new file mode 100644 index 00000000..7d91828f --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/tp-base.vcf @@ -0,0 +1,55 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H1.fa.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H2.fa.gz.vcf.gz; Date=Thu Jul 22 20:43:41 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=1.0.0 GT:PL:DP 1/1:8,8,5:15,29 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=4.0.0 GT:PL:DP 1/1:2,7,2:17,31 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=6.0.0 GT:PL 0/1:. +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=7.0.0 GT:PL:DP 1/1:6,8,8:40,41 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408;PctSeqSimilarity=0.890591;PctSizeSimilarity=0.789216;PctRecOverlap=0.672372;SizeDiff=86;StartDistance=-91;EndDistance=-91;GTMatch;TruScore=78;MatchId=8.1.4 GT:PL:DP 1/0:5,10,5:44,36 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=10.0.0 GT:PL:DP 0/1:6,6,1:34,8 diff --git a/repo_utils/test_files/answer_key/bench13_extend/tp-call.vcf b/repo_utils/test_files/answer_key/bench13_extend/tp-call.vcf new file mode 100644 index 00000000..bb894e69 --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_extend/tp-call.vcf @@ -0,0 +1,54 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h1-un.arrow-p1.fasta.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h2-un.arrow-p1.fasta.gz.vcf.gz; Date=Thu Jul 22 20:41:33 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/unused_samples/grch38/HG00733/exact.vcf.gz; Date=Mon Aug 16 16:57:27 2021 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00733 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25562871;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=1.0.0 GT 1/0 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster23_scaffold_3;QSTART=25405192;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=4.0.0 GT 1/1 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=cluster23_scaffold_3;QSTART=25290548;QSTRAND=-;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=6.0.0 GT 1/1 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=cluster23_scaffold_3;QSTART=25097419;QSTRAND=-;SVTYPE=DEL;SVLEN=-54;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=7.0.0 GT 1/1 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322;PctSeqSimilarity=0.890591;PctSizeSimilarity=0.789216;PctRecOverlap=0.672372;SizeDiff=86;StartDistance=-91;EndDistance=-91;GTMatch;TruScore=78;MatchId=8.1.4 GT 1/0 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=cluster23_scaffold_3;QSTART=24759935;QSTRAND=-;SVTYPE=DEL;SVLEN=-103;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=10.0.0 GT 1/0 diff --git a/repo_utils/test_files/answer_key/bench13_includebed/fn.vcf b/repo_utils/test_files/answer_key/bench13_includebed/fn.vcf new file mode 100644 index 00000000..e93b4f8e --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/fn.vcf @@ -0,0 +1,54 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H1.fa.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H2.fa.gz.vcf.gz; Date=Thu Jul 22 20:43:41 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=-1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=5.1.0;Multi GT:PL:DP 1/0:4,8,6:32,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408;PctSeqSimilarity=0.783448;PctSizeSimilarity=0.629902;PctRecOverlap=0.628362;SizeDiff=151;StartDistance=29;EndDistance=29;GTMatch;TruScore=68;MatchId=7.1.1 GT:PL:DP 1/0:5,10,5:44,36 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501;PctSeqSimilarity=0.715897;PctSizeSimilarity=0.451098;PctRecOverlap=0.453094;SizeDiff=275;StartDistance=-123;EndDistance=-123;GTMatch;TruScore=54;MatchId=7.0.2 GT:PL:DP 0/1:5,9,1:7,43 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.883495;PctSizeSimilarity=0.511628;PctRecOverlap=0;SizeDiff=-63;StartDistance=262;EndDistance=262;GTMatch;TruScore=46;MatchId=7.2.0 GT:PL:DP 0/1:6,1,9:20,25 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465;PctSeqSimilarity=.;PctSizeSimilarity=.;PctRecOverlap=.;SizeDiff=.;StartDistance=.;EndDistance=.;TruScore=.;MatchId=8.0._ GT:PL:DP 1/0:4,8,7:50,48 diff --git a/repo_utils/test_files/answer_key/bench13_includebed/fp.vcf b/repo_utils/test_files/answer_key/bench13_includebed/fp.vcf new file mode 100644 index 00000000..84237bd8 --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/fp.vcf @@ -0,0 +1,52 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h1-un.arrow-p1.fasta.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h2-un.arrow-p1.fasta.gz.vcf.gz; Date=Thu Jul 22 20:41:33 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/unused_samples/grch38/HG00733/exact.vcf.gz; Date=Mon Aug 16 16:57:27 2021 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00733 +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0.1;Multi GT 0/1 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257;PctSeqSimilarity=0.783448;PctSizeSimilarity=0.629902;PctRecOverlap=0.628362;SizeDiff=151;StartDistance=29;EndDistance=29;GTMatch;TruScore=68;MatchId=7.1.1 GT 1/0 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.715897;PctSizeSimilarity=0.451098;PctRecOverlap=0.453094;SizeDiff=275;StartDistance=-123;EndDistance=-123;GTMatch;TruScore=54;MatchId=7.0.2 GT 0/1 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129;PctSeqSimilarity=0.883495;PctSizeSimilarity=0.511628;PctRecOverlap=0;SizeDiff=-63;StartDistance=262;EndDistance=262;GTMatch;TruScore=46;MatchId=7.2.0 GT 0/1 diff --git a/repo_utils/test_files/answer_key/bench13_includebed/log.txt b/repo_utils/test_files/answer_key/bench13_includebed/log.txt new file mode 100644 index 00000000..26072ecd --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/log.txt @@ -0,0 +1,62 @@ +2022-05-13 23:29:09,465 [INFO] Running /mmfs1/groups/res_data/active/bnoyvert/git/truvari-github/truvari/truvari/__main__.py bench -b repo_utils/test_files/input1.vcf.gz -c repo_utils/test_files/input3.vcf.gz -f repo_utils/test_files/reference.fa -o test_results/bench13_includebed/ --includebed repo_utils/test_files/include.bed +2022-05-13 23:29:09,466 [INFO] Params: +{ + "base": "repo_utils/test_files/input1.vcf.gz", + "comp": "repo_utils/test_files/input3.vcf.gz", + "output": "test_results/bench13_includebed/", + "reference": "repo_utils/test_files/reference.fa", + "giabreport": false, + "debug": false, + "prog": false, + "refdist": 500, + "pctsim": 0.7, + "minhaplen": 50, + "pctsize": 0.7, + "pctovl": 0.0, + "typeignore": false, + "use_lev": false, + "chunksize": 1000, + "gtcomp": false, + "bSample": null, + "cSample": null, + "sizemin": 50, + "sizefilt": 30, + "sizemax": 50000, + "passonly": false, + "no_ref": false, + "includebed": "repo_utils/test_files/include.bed", + "extend": 0, + "multimatch": false +} +2022-05-13 23:29:09,468 [INFO] Truvari version: 3.3.0-dev +2022-05-13 23:29:09,475 [INFO] Including 10 bed regions +2022-05-13 23:29:09,475 [INFO] Found 1 chromosomes with overlapping regions +2022-05-13 23:29:09,547 [INFO] Zipped 2026 variants. Counter({'base': 1129, 'comp': 897}) +2022-05-13 23:29:09,547 [INFO] 10 chunks of 2026 variants. Counter({'__filtered': 2005, 'comp': 11, 'base': 10}) +2022-05-13 23:29:09,549 [INFO] Stats: { + "TP-base": 5, + "TP-call": 5, + "FP": 4, + "FN": 5, + "precision": 0.5555555555555556, + "recall": 0.5, + "f1": 0.5263157894736842, + "base cnt": 10, + "call cnt": 9, + "TP-call_TP-gt": 2, + "TP-call_FP-gt": 3, + "TP-base_TP-gt": 2, + "TP-base_FP-gt": 3, + "gt_concordance": 0.4, + "gt_matrix": { + "(1, 1)": { + "(1, 0)": 1, + "(1, 1)": 2 + }, + "(0, 1)": { + "(1, 1)": 1, + "(1, 0)": 1 + } + } +} +2022-05-13 23:29:09,556 [INFO] Finished bench diff --git a/repo_utils/test_files/answer_key/bench13_includebed/summary.txt b/repo_utils/test_files/answer_key/bench13_includebed/summary.txt new file mode 100644 index 00000000..4a998bbb --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/summary.txt @@ -0,0 +1,26 @@ +{ + "TP-base": 5, + "TP-call": 5, + "FP": 4, + "FN": 5, + "precision": 0.5555555555555556, + "recall": 0.5, + "f1": 0.5263157894736842, + "base cnt": 10, + "call cnt": 9, + "TP-call_TP-gt": 2, + "TP-call_FP-gt": 3, + "TP-base_TP-gt": 2, + "TP-base_FP-gt": 3, + "gt_concordance": 0.4, + "gt_matrix": { + "(1, 1)": { + "(1, 0)": 1, + "(1, 1)": 2 + }, + "(0, 1)": { + "(1, 1)": 1, + "(1, 0)": 1 + } + } +} \ No newline at end of file diff --git a/repo_utils/test_files/answer_key/bench13_includebed/tp-base.vcf b/repo_utils/test_files/answer_key/bench13_includebed/tp-base.vcf new file mode 100644 index 00000000..651fb4cd --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/tp-base.vcf @@ -0,0 +1,54 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H1.fa.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__NA24385-denovo-H2.fa.gz.vcf.gz; Date=Thu Jul 22 20:43:41 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=1.0.0 GT:PL:DP 1/1:8,8,5:15,29 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=3.0.0 GT:PL:DP 1/1:2,7,2:17,31 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=5.0.0 GT:PL 0/1:. +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=6.0.0 GT:PL:DP 1/1:6,8,8:40,41 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=9.0.0 GT:PL:DP 0/1:6,6,1:34,8 diff --git a/repo_utils/test_files/answer_key/bench13_includebed/tp-call.vcf b/repo_utils/test_files/answer_key/bench13_includebed/tp-call.vcf new file mode 100644 index 00000000..4d76a7d5 --- /dev/null +++ b/repo_utils/test_files/answer_key/bench13_includebed/tp-call.vcf @@ -0,0 +1,53 @@ +##fileformat=VCFv4.1 +##FILTER= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##contig= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##bcftools_mergeVersion=1.10.2+htslib-1.10.2 +##bcftools_mergeCommand=merge --force-samples -m none /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h1-un.arrow-p1.fasta.gz.vcf.gz /users/u233287/scratch/insertion_ref/long_read_data/remap/GRCh38_1kg_mainchrs.fa__v12_HG00733_hgsvc_pbsq2-clr_1000-flye.h2-un.arrow-p1.fasta.gz.vcf.gz; Date=Thu Jul 22 20:41:33 2021 +##INFO= +##INFO= +##bcftools_viewVersion=1.12+htslib-1.12 +##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/unused_samples/grch38/HG00733/exact.vcf.gz; Date=Mon Aug 16 16:57:27 2021 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00733 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25562871;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=1.0.0 GT 1/0 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster23_scaffold_3;QSTART=25405192;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=3.0.0 GT 1/1 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=cluster23_scaffold_3;QSTART=25290548;QSTRAND=-;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=5.0.0 GT 1/1 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=cluster23_scaffold_3;QSTART=25097419;QSTRAND=-;SVTYPE=DEL;SVLEN=-54;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;GTMatch;TruScore=100;MatchId=6.0.0 GT 1/1 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=cluster23_scaffold_3;QSTART=24759935;QSTRAND=-;SVTYPE=DEL;SVLEN=-103;PctSeqSimilarity=1;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=100;MatchId=9.0.0 GT 1/0 diff --git a/repo_utils/test_files/answer_key/bench_giab_report.txt b/repo_utils/test_files/answer_key/bench_giab_report.txt index 5b70e115..04bee17d 100644 --- a/repo_utils/test_files/answer_key/bench_giab_report.txt +++ b/repo_utils/test_files/answer_key/bench_giab_report.txt @@ -55,6 +55,7 @@ cSample None chunksize 1000 comp repo_utils/test_files/input1.vcf.gz debug False +extend 0 giabreport True gtcomp False includebed repo_utils/test_files/giab.bed diff --git a/repo_utils/test_files/answer_key/divided/multi_0.vcf b/repo_utils/test_files/answer_key/divided/multi_0.vcf index ded26de3..ad4034b3 100644 --- a/repo_utils/test_files/answer_key/divided/multi_0.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_0.vcf @@ -36,120 +36,122 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT ./. 1|0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT ./. 1|0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT ./. ./. 1|1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT ./. 1|0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT ./. ./. 0|1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT ./. ./. 0|1 -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT ./. 1|0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT ./. 1|0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT ./. ./. 0|1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT ./. ./. 1|0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT ./. ./. 0|1 -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT ./. 1|0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT ./. 1|0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT ./. 1|0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT ./. 1|0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT ./. 1|0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT ./. 0|1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT ./. ./. 1|0 -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT ./. 0|1 1|0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT ./. 1|0 ./. -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT ./. 1|0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT ./. 1|0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT ./. 1|0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT ./. 1|0 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT 1|1 ./. ./. -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT ./. 1|1 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT ./. ./. 1|0 -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT ./. 0|1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT 1|1 1|0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT 1|1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT ./. 1|0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT 1|1 1|1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT 1|1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT 1|1 1|0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT 1|1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT ./. 1|0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT 0|1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT ./. ./. 1|0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT 1|0 0|1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT ./. 1|1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT ./. 1|1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT ./. ./. 1|0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT 1|0 ./. ./. -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT 0|1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT ./. 1|1 1|0 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT ./. ./. 0|1 -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT 0|1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT ./. 1|1 1|0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT ./. ./. 1|0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT ./. ./. 1|0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT 1|0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT ./. 1|1 ./. -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT 1|1 ./. ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT ./. ./. 0|1 -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT 1|1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT ./. ./. 0|1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT ./. ./. 0|1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT ./. 1|1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT ./. 0|1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT 1|1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT ./. 1|0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT ./. 1|0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT ./. 1|0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT ./. ./. 0|1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT ./. 1|0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT ./. 0|1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT 0|1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT 1|1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT ./. 1|0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT ./. 1|0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT ./. 1|0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT ./. 1|0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT ./. 1|0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT ./. 1|0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT ./. 1|0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT 1|1 ./. ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT 0|1 0|1 ./. -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT ./. 1|0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT ./. 1|0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT ./. 1|0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT ./. 1|0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT 0|1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT 1|1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT ./. 1|0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT ./. ./. 0|1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT ./. 1|0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT ./. 1|0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT 1|1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT ./. 1|0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT ./. 1|0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT ./. 0|1 ./. +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 diff --git a/repo_utils/test_files/answer_key/divided/multi_1.vcf b/repo_utils/test_files/answer_key/divided/multi_1.vcf index 947d38c3..b6ebc52a 100644 --- a/repo_utils/test_files/answer_key/divided/multi_1.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_1.vcf @@ -36,203 +36,205 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT ./. 1|0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT ./. ./. 0|1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT ./. 1|0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT ./. ./. 0|1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT ./. 1|0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT ./. 1|0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT ./. 1|0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT ./. 1|0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT ./. 1|0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT ./. 1|0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT ./. 0|1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT ./. 1|0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT ./. 1|0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT ./. 1|0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT ./. 1|0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT 0|1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT ./. 1|0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT ./. 1|1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT ./. 1|0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT ./. 1|0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT ./. 1|0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT ./. ./. 1|0 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT 0|1 1|0 ./. -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT ./. ./. 1|1 -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT ./. 1|0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT ./. 1|0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT ./. 1|0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT ./. 1|0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT ./. 1|0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT ./. 1|0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT ./. 1|0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT 1|1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT ./. 1|0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT ./. 1|0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT ./. 1|1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT ./. 1|1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT ./. 1|1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT ./. 1|1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT ./. 1|1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT ./. 1|1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT ./. 1|1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT ./. 1|1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT ./. ./. 1|1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT 0|1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT ./. 1|1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT ./. ./. 1|1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT ./. ./. 1|1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT 1|1 ./. ./. -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69 GT 1/1 ./. 1/0 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT ./. 1/1 ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT ./. 1|1 ./. -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT ./. ./. 0|1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT ./. ./. 1|0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT ./. 1|1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT ./. 1|1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT ./. 1|1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT ./. ./. 0|1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT 1|1 ./. ./. -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT ./. 1|1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT ./. ./. 0|1 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT 0|1 1|1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT ./. ./. 1|1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT ./. ./. 1|1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT 0|1 1|1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT ./. ./. 0|1 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT 1|0 ./. ./. -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT ./. ./. 1|0 -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT 0|1 1|1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT ./. ./. 0|1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT 0|1 1|1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT 0|1 1|1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT 1|0 ./. ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT ./. ./. 1|1 -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT 1|0 ./. 1|1 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69 GT:DP:AD 1/1:35:19,16 ./.:31:21,10 1/0:17:8,9 +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT:DP:AD ./.:36:13,23 1/1:14:7,7 ./.:40:19,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 diff --git a/repo_utils/test_files/answer_key/divided/multi_10.vcf b/repo_utils/test_files/answer_key/divided/multi_10.vcf index 5367180b..b467aa4e 100644 --- a/repo_utils/test_files/answer_key/divided/multi_10.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_10.vcf @@ -36,122 +36,124 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT 1|0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT 1|0 0|1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT 1|0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT ./. 1|0 0|1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT ./. ./. 1|0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT 1|0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT 1|0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT 1|0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT 1|0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT 1|0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT 1|0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT ./. 1|0 1|1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT ./. 1|0 1|1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT ./. 1|0 1|1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT ./. 1|0 1|1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT ./. 1|0 1|1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT ./. 1|0 1|1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT ./. 1|0 1|1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT ./. 1|0 1|1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT 1|0 ./. ./. -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT 0|1 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT ./. 1|0 1|1 -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT ./. 1|0 1|1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT ./. 1|0 1|1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT 1|0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT 0|1 1|0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT ./. ./. 1|0 -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT ./. ./. 0|1 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT ./. 0|1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT ./. 0|1 1|1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT ./. 0|1 0|1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT 0|1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT 1|0 1|0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT 1|1 1|0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT 0|1 1|0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT 1|1 1|0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT ./. 0|1 1|1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT ./. 0|1 1|1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT ./. 1|0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT 1|1 1|0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT ./. 1|1 1|1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT 1|1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT ./. ./. 1|0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT ./. ./. 0|1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT ./. 1|1 1|1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT ./. 1|1 1|0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT ./. 1|1 1|1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT 1|0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT 1|1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT ./. ./. 1|0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT 1|1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT 1|1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT 1|0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT 0|1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT 0|1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT ./. ./. 1|0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT 0|1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT 1|0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT 0|1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT 0|1 1|0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT ./. 1|1 1|1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT 0|1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT ./. 1|1 1|1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT ./. 1|1 1|1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT ./. 1|1 0|1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT ./. ./. 1|0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT ./. 1|1 1|1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT 0|1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT ./. 1|1 1|1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT ./. 1|0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT 1|0 ./. ./. +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 diff --git a/repo_utils/test_files/answer_key/divided/multi_11.vcf b/repo_utils/test_files/answer_key/divided/multi_11.vcf index bf192547..5d817164 100644 --- a/repo_utils/test_files/answer_key/divided/multi_11.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_11.vcf @@ -36,112 +36,114 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT 1|0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT ./. 1|0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT ./. 1|0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT ./. 1|1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT ./. 0|1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT ./. 1|1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT ./. 1|1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT ./. 1|1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT 1|0 1|1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT 1|0 1|0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT 0|1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT 1|1 1|1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT 1|0 ./. ./. -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT ./. 1|1 ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT 1|0 1|1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT ./. 1|1 1|0 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT 1|0 1|1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT ./. 1|1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT 1|0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT ./. 1|1 ./. -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT ./. ./. 0|1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT 0|1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT ./. 1|0 ./. -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT ./. ./. 1|0 -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT 0|1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT ./. ./. 0|1 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT 1|0 0|1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT ./. 1|0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT 1|0 1|1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT 0|1 ./. ./. -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT ./. ./. 0|1 -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT 0|1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT ./. ./. 1|0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT ./. ./. 1|0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT ./. 0|1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT ./. 0|1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT ./. ./. 1|0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT ./. ./. 1|0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT 1|0 1|1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT ./. 1|0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT ./. ./. 1|0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT ./. ./. 1|1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT 1|0 1|1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT ./. ./. 1|1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT 0|1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT 0|1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT ./. 0|1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT 0|1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT ./. 1|0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT 1|0 ./. 1|1 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 diff --git a/repo_utils/test_files/answer_key/divided/multi_12.vcf b/repo_utils/test_files/answer_key/divided/multi_12.vcf index b255fe79..aa729f35 100644 --- a/repo_utils/test_files/answer_key/divided/multi_12.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_12.vcf @@ -36,175 +36,177 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT 1/1 1/0 1/1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT ./. 0|1 ./. -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT 0|1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT 1|0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT ./. 0|1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT ./. 0|1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT 0|1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT 0|1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT ./. ./. 1|1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT 0|1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT 0|1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT 0|1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT 0|1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT 0|1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT 0|1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT 0|1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT 0|1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT 0|1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT 0|1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT 0|1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT 0|1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT 0|1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT 0|1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT 0|1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT 0|1 1|1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT 0|1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT ./. 1|0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT ./. ./. 0|1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT 1|0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT ./. ./. 0|1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT 1|0 ./. ./. -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT 1|0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT 1|0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT 1|0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT 1|0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT 1|0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT ./. 1|0 0|1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT 1|0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT 1|0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT ./. 1|0 0|1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT 1|0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT ./. 1|0 0|1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT 1|0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT ./. 1|0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT ./. ./. 1|1 -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT 1|0 1|0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT 1|0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT ./. 1|0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT ./. 1|0 0|1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT ./. ./. 0|1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT 1|0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT ./. ./. 0|1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT ./. ./. 1|0 -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT 1/0 ./. ./. -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT ./. ./. 0|1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT 1|0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT ./. ./. 0|1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT ./. 1|0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT 1|0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT 1|0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT 1|0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT ./. ./. 0/1 -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT 1|0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT ./. ./. 0|1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT 1|0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT 1|0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT ./. ./. 0|1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT 0/1 ./. ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630 GT ./. 0/1 ./. -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632 GT ./. 1/0 ./. -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT ./. ./. 1|1 -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT 1|0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT ./. ./. 1|0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT 1|1 0|1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT 1|0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT ./. ./. 1/0 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT ./. 0|1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT 1/0 ./. ./. -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT ./. 1|0 ./. -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT 0/1 ./. ./. -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT ./. 1|1 ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT ./. ./. 0/1 -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT ./. ./. 1/0 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT 1|0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT ./. ./. 0|1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT ./. 0|1 ./. -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT ./. ./. 0|1 -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT 1|0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT 1|0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT ./. ./. 0|1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT 1|0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT ./. ./. 0|1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT ./. ./. 0|1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT 1|0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT ./. ./. 0|1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT ./. ./. 0|1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT 1|0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT 1|0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT 1|0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT 0|1 ./. ./. -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT ./. 1|0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT ./. ./. 1|1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT 0|1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT ./. ./. 0|1 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 diff --git a/repo_utils/test_files/answer_key/divided/multi_13.vcf b/repo_utils/test_files/answer_key/divided/multi_13.vcf index 898c308d..beb75be4 100644 --- a/repo_utils/test_files/answer_key/divided/multi_13.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_13.vcf @@ -36,136 +36,138 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT 0|1 ./. ./. -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT 1|0 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT ./. ./. 1|0 -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT 0|1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT ./. ./. 0|1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT ./. ./. 0|1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT 0|1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT 0|1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT 0|1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT ./. 1|0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT 1|0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT ./. ./. 0|1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT 1|1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT 1|0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT ./. ./. 0|1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT ./. ./. 0|1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT ./. 1|0 0|1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT 1|1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT 0|1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT 0|1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT 1|0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT ./. 1|0 1|0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT 0|1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT 0|1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT 1|0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT ./. 1|0 1|0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT ./. 0|1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT 1|0 0|1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT ./. ./. 1|0 -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT 1|0 ./. ./. -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT ./. 0|1 ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT 1|1 0|1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT 0|1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT ./. ./. 0|1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT ./. ./. 1|0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT ./. 0|1 0|1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT ./. ./. 1|0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT ./. 0|1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT ./. ./. 0|1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT 1|0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT 1|0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT 1|0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT 1|0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT ./. ./. 1|0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT 0|1 1|1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT ./. ./. 0|1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT ./. 1|1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT ./. ./. 1|1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT ./. ./. 1|1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT 0|1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT ./. 0|1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT 0|1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT ./. ./. 1|1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT ./. ./. 1|1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT ./. ./. 1|1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT 1|0 ./. ./. -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT ./. ./. 1|1 -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT ./. ./. 1|1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT ./. ./. 1|1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT 0|1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT ./. ./. 1|1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT ./. ./. 1|1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT ./. ./. 1|1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT ./. ./. 1|1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT ./. ./. 1|1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT ./. ./. 1|1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT ./. ./. 1|1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT ./. ./. 1|1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT ./. ./. 1|1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT 0|1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT ./. ./. 1|1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT ./. ./. 0|1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT ./. ./. 1|1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT ./. ./. 1|1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT ./. ./. 1|1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT ./. ./. 1|1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT ./. ./. 1|1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT ./. ./. 1|1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT ./. ./. 1|1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT ./. ./. 1|1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT ./. ./. 1|1 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 diff --git a/repo_utils/test_files/answer_key/divided/multi_14.vcf b/repo_utils/test_files/answer_key/divided/multi_14.vcf index f1eec887..75d98ce9 100644 --- a/repo_utils/test_files/answer_key/divided/multi_14.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_14.vcf @@ -36,119 +36,121 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT 0|1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT ./. ./. 1|1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT ./. ./. 1|1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT 1|0 1|0 ./. -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT 0|1 0|1 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT ./. ./. 1|1 -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT ./. 1|0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT 0|1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT 0|1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT ./. ./. 0|1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT ./. ./. 0|1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT ./. 0|1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT 1|0 1|1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT ./. ./. 0|1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT 1|0 1|1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT ./. ./. 0|1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT 0|1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT ./. 1|0 0|1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT ./. 1|0 0|1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT ./. 0|1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT ./. 1|0 0|1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT ./. 1|0 0|1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT 1|0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT ./. 0|1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT ./. 1|0 0|1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT ./. 1|0 0|1 -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT 1|0 ./. ./. -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT 0|1 ./. ./. -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT ./. ./. 1|0 -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT ./. 1|0 0|1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT 0|1 ./. ./. -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT ./. 1|0 0|1 -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT ./. 1|0 0|1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT ./. 1|0 0|1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT ./. 1|0 0|1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT ./. 1|0 0|1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT 1|0 0|1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT ./. 1|0 0|1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT 0|1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT 1|0 1|1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT ./. ./. 0|1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT ./. 0|1 ./. -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT 1|0 1|0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT ./. ./. 0|1 -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT 0/1 1/0 1/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT 1/0 ./. ./. -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT ./. 0|1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT ./. ./. 0|1 -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT ./. ./. 0|1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT ./. ./. 0|1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT 0|1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT ./. ./. 0|1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT 1|1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT ./. 1|0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT 1|0 ./. ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT ./. 1|0 ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT ./. 1|0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT ./. 1|0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT 1|1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT ./. 1|0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT ./. 1|0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT 1|1 1|0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT ./. ./. 0|1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT ./. 1|0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT ./. 1|0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT ./. 1|0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT ./. 0|1 1|0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT ./. ./. 0|1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT ./. ./. 1|0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT 1|1 1|0 1|0 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 diff --git a/repo_utils/test_files/answer_key/divided/multi_15.vcf b/repo_utils/test_files/answer_key/divided/multi_15.vcf index 995a4e81..1209e506 100644 --- a/repo_utils/test_files/answer_key/divided/multi_15.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_15.vcf @@ -36,132 +36,134 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT ./. 0|1 1|0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT ./. 0|1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT ./. 0|1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT ./. 1|0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT ./. 1|1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT ./. 0|1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT ./. 0|1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT ./. 1|0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT ./. 0|1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT ./. 1|1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT ./. 1|1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT ./. 1|1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT ./. 1|0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT ./. 1|1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT ./. 1|1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT ./. 1|1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT ./. 1|1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT ./. 1|1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT ./. 0|1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT ./. 1|1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT ./. 0|1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT ./. 1|1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT ./. 1|1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT ./. 1|1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT ./. 0|1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT ./. 0|1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT ./. 1|0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT ./. 0|1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT ./. 0|1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT ./. 1|0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT ./. 0|1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT 0|1 1|0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT ./. 0|1 ./. -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT ./. 0|1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT ./. 0|1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT ./. ./. 1|0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT 1|0 ./. ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT ./. 1/0 ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT ./. 0/1 ./. -chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT 0/1 ./. 1/0 -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT ./. ./. 1|0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT ./. ./. 1|0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT 0|1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT 0|1 1|1 ./. -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT 0|1 1|0 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT ./. ./. 1|0 -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT 1|0 1|0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT ./. ./. 1|0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT ./. 0|1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT ./. ./. 0|1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT 1|0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT 1|0 ./. ./. -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT ./. ./. 1|0 -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT 1|0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT ./. ./. 1|0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT 1|0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT 1|0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT 0|1 ./. ./. -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT ./. 0|1 ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT ./. ./. 1|0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT ./. ./. 1|0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT ./. ./. 1|0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT ./. 0|1 ./. -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT 1|0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT ./. 0|1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT ./. ./. 1|0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT 1|0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT ./. 0|1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT 1|1 1|0 1|1 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT:DP:AD ./.:15:10,5 1/0:29:9,20 ./.:30:15,15 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT:DP:AD ./.:38:18,20 0/1:34:22,12 ./.:28:13,15 +chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT:DP:AD 0/1:26:8,18 ./.:41:17,24 1/0:30:17,13 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 diff --git a/repo_utils/test_files/answer_key/divided/multi_16.vcf b/repo_utils/test_files/answer_key/divided/multi_16.vcf index 2348dfc3..143fe1ae 100644 --- a/repo_utils/test_files/answer_key/divided/multi_16.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_16.vcf @@ -36,109 +36,111 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT ./. ./. 1|0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT 1|0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT ./. ./. 1|0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT 1|0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT ./. ./. 1|0 -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT 0|1 ./. ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT ./. 1|0 ./. -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT ./. 0|1 ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT 1|0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT 1|0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT 0|1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT ./. ./. 1|0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT ./. ./. 0|1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT 1|0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT ./. ./. 1|0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT ./. 0|1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT 1|0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT ./. ./. 1|0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT 1|0 ./. ./. -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT ./. ./. 1|0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT ./. ./. 1|0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT 1|0 0|1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT ./. 0|1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT ./. ./. 1|0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT ./. 1|0 1|1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT ./. ./. 1|0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT ./. 0|1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT 0/1 1/0 0/1 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT 1|0 0|1 ./. -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT ./. ./. 1|0 -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT ./. ./. 1|0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT ./. 1|0 ./. -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT ./. ./. 1|0 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 0/1 ./. ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT 1|0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT ./. ./. 1|0 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT ./. ./. 1|0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT ./. ./. 1|0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT ./. ./. 1|0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT 1|0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT ./. ./. 1|0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT ./. 1|0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT 1|0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT 1|0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT ./. ./. 1|0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT 1|0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT ./. 0|1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT 1|0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT ./. ./. 1|0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT 1|0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT ./. ./. 1|0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT ./. ./. 1|0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT ./. ./. 1|0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT 1|1 1|1 1|1 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 diff --git a/repo_utils/test_files/answer_key/divided/multi_17.vcf b/repo_utils/test_files/answer_key/divided/multi_17.vcf index 058698e6..9268578b 100644 --- a/repo_utils/test_files/answer_key/divided/multi_17.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_17.vcf @@ -36,371 +36,373 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT ./. ./. 1|0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT 1|0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT 1|0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT ./. ./. 1|0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT ./. ./. 1|0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT ./. ./. 1|0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT ./. 0|1 ./. -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT 1|0 ./. ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT ./. ./. 1|0 -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT ./. ./. 1|0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT ./. 1|0 1|0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT ./. 1|1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT ./. 1|0 1|1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT ./. ./. 1|0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT ./. 1|0 1|0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT ./. 1|0 1|0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT ./. 1|0 1|0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT ./. 1|0 1|0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT ./. 1|0 1|0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT 1|1 0|1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT 1|1 0|1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT ./. ./. 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT 1/1 0/1 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT ./. 1/0 ./. -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT ./. ./. 0|1 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT ./. 1|0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT 1|1 0|1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT ./. 1|0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT ./. 1|0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT ./. ./. 0|1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT 1|1 0|1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT ./. 1|0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT ./. 1|0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT ./. ./. 1|0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT ./. 1|0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT 1|1 0|1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT ./. ./. 1|0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT 1|1 0|1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT ./. 0|1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT ./. ./. 1|0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT 1|1 0|1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT 1|1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT ./. ./. 1|0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT 1|1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT ./. 1|0 ./. -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT ./. 0|1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT ./. ./. 1|0 -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT ./. 1|1 1|0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT ./. 1|1 ./. -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT ./. ./. 1|0 -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT ./. ./. 0|1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT 1|0 1|1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT ./. ./. 1|0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT 1|1 0|1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT ./. ./. 0|1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT ./. ./. 0|1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT ./. 0|1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT 0|1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT ./. 0|1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT ./. 0|1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT ./. 1|0 1|1 -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT ./. 0|1 ./. -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT ./. 1|0 1|1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT ./. 1|1 1|1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT ./. 1|1 1|1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT ./. 1|1 1|1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT ./. 0|1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT 1|0 0|1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT 0|1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT 1|1 0|1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT ./. 0|1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT ./. 0|1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT 1|1 ./. ./. -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT ./. 0|1 ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT ./. ./. 0|1 -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT ./. 1|0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT ./. ./. 0|1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT ./. 1|1 1|1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT ./. 1|1 1|1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT ./. 1|0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT ./. 0|1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT 1|1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT 1|0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT ./. 1|0 1|1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT ./. 1|0 1|1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT ./. 0|1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT 1|1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT ./. 1|0 1|1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT ./. 0|1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT 1|1 0|1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT ./. 1|0 1|1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT ./. ./. 1|0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT ./. ./. 0|1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT ./. 1|0 1|1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT ./. 1|0 1|1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT ./. 1|0 1|1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT ./. 0|1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT 1|1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT ./. 1|0 1|1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT ./. 1|0 1|1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT ./. 1|0 1|1 -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT ./. 0|1 ./. -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT ./. 1|0 1|1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT ./. 1|0 1|1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT ./. 1|0 1|1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT 1|1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT ./. 0|1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT ./. 1|1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT ./. ./. 1|0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT 0|1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT ./. 1|0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT 0|1 ./. ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT ./. 1|0 1|1 -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT ./. 0|1 ./. -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT ./. 0|1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT ./. 1|0 1|1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT ./. 1|0 0|1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT ./. 1|0 1|1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT ./. 1|0 1|1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT ./. ./. 1|0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT ./. 1|0 1|1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT ./. ./. 1|0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT ./. ./. 1|0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT 0|1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT ./. 1|0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT ./. ./. 0|1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT ./. 1|0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT ./. ./. 0|1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT 0|1 1|1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT 0|1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT ./. 0|1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT 1|0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT 1|0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT 1|1 0|1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT 0|1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT 1|0 ./. ./. -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT 0|1 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT ./. 1|0 1|1 -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT ./. 1|0 1|1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT ./. 1|0 1|1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT 1|0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT 1|0 ./. ./. -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT 0/1 1/0 1/1 -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT 1|0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT 1|0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT 1|0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT ./. 1|0 1|1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT 1|0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT 1|0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT 1|0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT 1|0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT 1|0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT 1|0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT 1|0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT 1|0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT 1|0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT 1|0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT 1|0 ./. ./. -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT ./. 1|0 0|1 -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT ./. ./. 1|0 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT 1|0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT 1|0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT 1|0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT 1|1 1|0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT ./. 0|1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT 0|1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT ./. 1|1 1|1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT ./. 1|1 1|1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT 1|0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT ./. 1|1 1|1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT ./. 1|1 1|1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT ./. 1|1 1|1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT ./. 1|1 1|1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT ./. 1|1 1|1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT ./. 1|1 1|1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT 1|1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT 1|0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT ./. 1|1 1|1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT ./. 1|1 1|1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT ./. 1|1 1|1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT ./. 1|1 1|1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT ./. 1|1 1|1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT ./. ./. 0|1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT ./. 1|1 1|1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT ./. ./. 0|1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT ./. 1|1 1|1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT ./. ./. 0|1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT ./. 1|1 1|1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT ./. ./. 1|0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT ./. 1|1 1|1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT ./. 1|1 1|1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT ./. 1|1 1|1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT ./. ./. 0|1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT ./. 1|1 1|1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT ./. 1|1 1|1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT ./. ./. 0|1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT ./. 1|1 1|1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT ./. ./. 0|1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT ./. 1|1 1|0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT ./. ./. 0|1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT ./. 1|1 1|1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT ./. 1|1 1|1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT 1|1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT ./. 1|0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT 1|1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT 1|1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT 1|1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT 1|1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT 1|1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT ./. 1|1 1|1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT ./. ./. 0|1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT 1|1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT 1|1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT ./. 1|1 1|1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT ./. 1|1 0|1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT ./. ./. 0|1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT ./. ./. 0|1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT ./. 1|1 0|1 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT ./. 1|1 0|1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT ./. 1|1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT ./. ./. 0|1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT 0|1 ./. ./. -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT ./. ./. 0|1 -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT ./. ./. 0|1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT ./. 1|0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT 0|1 0|1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT ./. 1|0 0|1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT ./. 1|1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT ./. 1|1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT 1|0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT ./. ./. 0|1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT ./. ./. 0|1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT ./. ./. 0|1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT ./. ./. 0|1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT ./. ./. 1|0 -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT 1|0 ./. ./. -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT 0|1 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT ./. ./. 0|1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT ./. ./. 0|1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT ./. 1|1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT ./. ./. 0|1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT ./. 1|1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT 0|1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT ./. 0|1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT 0|1 ./. ./. +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:DP:AD ./.:30:19,11 ./.:35:14,21 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 diff --git a/repo_utils/test_files/answer_key/divided/multi_18.vcf b/repo_utils/test_files/answer_key/divided/multi_18.vcf index 999d5949..38b9a27d 100644 --- a/repo_utils/test_files/answer_key/divided/multi_18.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_18.vcf @@ -36,122 +36,124 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT ./. 1|1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT ./. ./. 0|1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT ./. 1|1 0|1 -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT ./. 1|1 ./. -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT ./. ./. 0|1 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT ./. ./. 0|1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT ./. 1|1 0|1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT ./. ./. 0|1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT ./. 1|1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT ./. ./. 1|0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT ./. 1|1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT ./. ./. 0|1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT ./. 1|1 0|1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT ./. ./. 0|1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT ./. 1|1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT ./. 1|1 0|1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT 1|0 ./. ./. -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT ./. 1|1 0|1 -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT ./. 1|1 0|1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT ./. 1|1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT ./. 1|1 0|1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT ./. 0|1 1|1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT ./. 1|1 0|1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT ./. 1|1 0|1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT ./. ./. 0|1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT ./. 1|1 0|1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT ./. 1|0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT ./. 1|0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT ./. ./. 1|0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT ./. 1|1 0|1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT ./. ./. 0|1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT 1|1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT ./. ./. 1|0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT ./. ./. 0|1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT ./. 1|1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT ./. 1|1 0|1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT ./. ./. 0|1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT ./. ./. 0|1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT ./. 0|1 0|1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT ./. ./. 0|1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT ./. ./. 0|1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT ./. ./. 0|1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT ./. ./. 0|1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT 1|0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT 1|0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT ./. ./. 0|1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT ./. 0|1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT ./. ./. 0|1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT ./. 0|1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT ./. 1|0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT ./. 0|1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT ./. 0|1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT ./. 0|1 ./. -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT ./. ./. 0|1 -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT 0|1 ./. ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT ./. 1|0 1|0 -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT ./. 0|1 ./. -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT ./. 0|1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT ./. 0|1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT ./. 0|1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT ./. 1|0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT ./. 0|1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT ./. 0|1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT ./. 0|1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT 1|1 ./. 1|1 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 diff --git a/repo_utils/test_files/answer_key/divided/multi_19.vcf b/repo_utils/test_files/answer_key/divided/multi_19.vcf index 997fc6b3..bb3b1e4e 100644 --- a/repo_utils/test_files/answer_key/divided/multi_19.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_19.vcf @@ -36,146 +36,148 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT 1|0 1|1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT 0|1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT 1|0 0|1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT ./. 0|1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT ./. ./. 0|1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT ./. 0|1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT 1|0 0|1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT ./. ./. 0|1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT ./. 1|0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT ./. ./. 0|1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT ./. 0|1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT 0|1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT ./. 1|0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT 1|0 0|1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT ./. ./. 0|1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT ./. ./. 1|0 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT ./. ./. 0|1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT ./. ./. 0|1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT ./. 1|0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT ./. ./. 0|1 -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT 1|0 ./. ./. -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT ./. 1|0 ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT ./. ./. 0|1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT ./. ./. 0|1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT ./. ./. 0|1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT ./. ./. 0|1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT ./. ./. 0|1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT ./. ./. 0|1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT ./. ./. 0|1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT ./. 1|0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT ./. ./. 0|1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT ./. ./. 0|1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT ./. ./. 0|1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT ./. ./. 0|1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT ./. ./. 0|1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT ./. ./. 0|1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT 0|1 1|0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT ./. ./. 0|1 -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT ./. ./. 0|1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT 1|0 0|1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT ./. ./. 1|0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT 1|0 0|1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT 1|0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT 1|0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT 1|0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT ./. ./. 0|1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT 1|0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT 1|0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT 1|0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT ./. 1|0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT 1|0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT 1|0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT 1|0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT ./. 1|0 ./. +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 diff --git a/repo_utils/test_files/answer_key/divided/multi_2.vcf b/repo_utils/test_files/answer_key/divided/multi_2.vcf index a6ddb8ec..2b42ac9d 100644 --- a/repo_utils/test_files/answer_key/divided/multi_2.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_2.vcf @@ -36,160 +36,162 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT 0|1 1|1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT ./. ./. 0|1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT 0|1 1|1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT 0|1 1|1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT ./. ./. 0|1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT 0|1 1|0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT ./. ./. 1|0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT 0|1 1|1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT ./. ./. 0|1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT ./. ./. 0|1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT 0|1 1|1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT ./. ./. 0|1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT 1|0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT ./. ./. 0|1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT 0|1 1|1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT ./. 0|1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT ./. ./. 0|1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT ./. ./. 0|1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT ./. ./. 0|1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT ./. ./. 0|1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT ./. ./. 0|1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT ./. ./. 0|1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT 0|1 1|1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT ./. ./. 0|1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT ./. ./. 0|1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT ./. ./. 0|1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT ./. ./. 0|1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT ./. ./. 0|1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT ./. ./. 0|1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT ./. ./. 0|1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT ./. ./. 0|1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT ./. ./. 0|1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT ./. ./. 0|1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT ./. ./. 0|1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT ./. ./. 0|1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT ./. ./. 0|1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT ./. ./. 0|1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT ./. ./. 0|1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT ./. 0|1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT 0|1 1|0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT ./. ./. 0|1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT ./. ./. 0|1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT ./. ./. 0|1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT ./. ./. 0|1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT ./. ./. 0|1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT ./. ./. 0|1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT ./. ./. 0|1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT ./. ./. 0|1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT ./. ./. 0|1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT 0|1 1|1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT ./. ./. 0|1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT ./. ./. 0|1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT ./. ./. 0|1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT ./. ./. 0|1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT ./. ./. 0|1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT ./. ./. 0|1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT ./. ./. 0|1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT ./. ./. 0|1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT ./. ./. 0|1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT ./. ./. 0|1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT ./. ./. 0|1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT 0|1 1|1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT ./. ./. 0|1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT ./. ./. 0|1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT ./. ./. 0|1 -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT ./. ./. 0|1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT 0|1 1|0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT ./. ./. 0|1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT ./. ./. 0|1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT ./. ./. 0|1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT ./. ./. 0|1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT ./. ./. 0|1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT ./. ./. 0|1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT ./. ./. 0|1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT ./. ./. 0|1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT ./. ./. 0|1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT ./. ./. 0|1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT ./. ./. 0|1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT ./. ./. 0|1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT ./. ./. 0|1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT ./. ./. 0|1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT ./. ./. 0|1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT ./. ./. 0|1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT ./. ./. 0|1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT 0|1 1|1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT ./. ./. 0|1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT ./. ./. 0|1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT 0|1 1|1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT ./. ./. 0|1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT 0|1 1|1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT ./. ./. 0|1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT ./. ./. 0|1 -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT ./. ./. 0|1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT 1|0 ./. ./. -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT ./. ./. 1|0 -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT ./. ./. 0|1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT 0|1 1|1 0|1 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 diff --git a/repo_utils/test_files/answer_key/divided/multi_20.vcf b/repo_utils/test_files/answer_key/divided/multi_20.vcf index 77aefad2..b4c52284 100644 --- a/repo_utils/test_files/answer_key/divided/multi_20.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_20.vcf @@ -36,123 +36,125 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT 1|0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT 1|0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT 1|0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT 1|0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT 1|0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT ./. 1|0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT ./. 1|0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT ./. 1|0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT 1|1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT ./. 1|0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT 0|1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT 0|1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT 0|1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT 0|1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT 0|1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT 0|1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT 0|1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT 0|1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT 0|1 0|1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT 0|1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT 0|1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT 0|1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT 0|1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT 0|1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT 0|1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT 0|1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT 0|1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT 0|1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT 0|1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT 0|1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT 0|1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT 0|1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT 0|1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT 0|1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT ./. ./. 0|1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT ./. 0|1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT ./. ./. 0|1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT 1|0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT ./. ./. 0|1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT ./. 0|1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT 1|0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT 1|0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT 1|0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT 1|0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT 1|0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT 1|0 1|0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT ./. 1|0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT 1|0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT 0|1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT ./. 0|1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT ./. 0|1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT ./. 0|1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT 0|1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT ./. 0|1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT ./. 0|1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT ./. 0|1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT ./. ./. 0|1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT ./. 0|1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT ./. 1|0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT ./. 1|0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT 1|0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT 0|1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT ./. 0|1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT ./. 0|1 0|1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT ./. 0|1 0|1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT ./. ./. 0|1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT ./. ./. 0|1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT ./. 0|1 0|1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT 0|1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT ./. 0|1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT ./. 0|1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT ./. 1|0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT ./. 0|1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT ./. 1|1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT ./. 1|1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT ./. 1|1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT ./. 1|1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT ./. 1|1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT ./. 1|1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT ./. 1|1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT ./. 1|1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT ./. 1|1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT ./. 1|1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT ./. 1|1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT ./. 1|1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT ./. 1|1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT ./. 1|1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT 0|1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT ./. 1|1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT ./. 1|1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT ./. ./. 0|1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT ./. 1|0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT ./. 1|0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT ./. 1|0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT ./. 1|0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT ./. 1|0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT ./. 1|0 ./. +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 diff --git a/repo_utils/test_files/answer_key/divided/multi_21.vcf b/repo_utils/test_files/answer_key/divided/multi_21.vcf index 02ecef5a..b21990a3 100644 --- a/repo_utils/test_files/answer_key/divided/multi_21.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_21.vcf @@ -36,129 +36,131 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT ./. 1|1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT ./. 1|1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT ./. 0|1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT ./. 1|1 0|1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT 0|1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT 0|1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT ./. 1|1 0|1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT ./. 1|1 0|1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT 0|1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT ./. 1|1 0|1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT 0|1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT ./. ./. 1|0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT ./. ./. 1|0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT ./. ./. 1|0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT 0/1 ./. 1/0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT ./. 0|1 0|1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT 1|0 ./. ./. -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT 0|1 ./. ./. -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT ./. 1|0 1|0 -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT ./. 0|1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT ./. ./. 0|1 -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT 1|0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT 1|0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT 1|0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT 1|0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT 1|0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT 0|1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT 1|0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT 1|0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT 1|0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT 1|0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT 1|0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT 1|0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT 1|0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT 1|0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT 1|0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT 1|0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT 1|0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT 1|0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT 1|0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT ./. ./. 0|1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT 1|0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT 1|0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT 1|0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT 1|0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT ./. 1|0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT 1|0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT 1|0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT 1|0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT 1|0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT 1|0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT 1|0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT 1|0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT 1|0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT 1|0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT 1|0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT ./. ./. 0|1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT 1|0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT 1|0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT 1|0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT 1|0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT 1|0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT 1|0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT 1|0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT 1|0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT 1|0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT 1|0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT 1|0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT 1|0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT 1|0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT 1|0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT 1|0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT 1|0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT 1|0 ./. ./. +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 diff --git a/repo_utils/test_files/answer_key/divided/multi_22.vcf b/repo_utils/test_files/answer_key/divided/multi_22.vcf index 0a5b2eab..b8f481a4 100644 --- a/repo_utils/test_files/answer_key/divided/multi_22.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_22.vcf @@ -36,79 +36,81 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT 1|0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT 1|0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT 1|0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT 1|0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT 1|0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT 1|0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT 1|0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT 1|0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT ./. ./. 1|0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT ./. 1|1 0|1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT 1|0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT 1|0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT 1|0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT 1|0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT 1|0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT 1|0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT 1|0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT ./. ./. 0|1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT 1|0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT 1|0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT 1|0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT ./. ./. 0|1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT 1|0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT 0|1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT 0|1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT 1|1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT 1|1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT 0|1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT 1|1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT 1|1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT 1|1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT ./. ./. 1|0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT 1|1 ./. ./. -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT ./. 1|0 1|0 -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT 1|1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT 0|1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT 1|1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT 1|0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT 1|0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT 1|0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT 1|0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT ./. ./. 0|1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT 1|0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT 1|0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT 1|0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT 0|1 1|0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT 1|0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT 1|0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT 1|0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT 1|0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT 1|0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT 1|0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT 1|0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT ./. 0|1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT ./. ./. 1|1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT 1|0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT ./. ./. 1|0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT 1|0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT 1|0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT 1|0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT 1|0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT 1|0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT 1|0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT 1|0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT 1|0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT 1|0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT 1|0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT 1|0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT 1|0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT ./. ./. 0|1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT 1|0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT 1|0 ./. ./. +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 diff --git a/repo_utils/test_files/answer_key/divided/multi_3.vcf b/repo_utils/test_files/answer_key/divided/multi_3.vcf index bf5d716a..a798977e 100644 --- a/repo_utils/test_files/answer_key/divided/multi_3.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_3.vcf @@ -36,336 +36,338 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT ./. ./. 0|1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT ./. ./. 0|1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT ./. ./. 0|1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT 0|1 1|1 ./. -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT ./. ./. 1|0 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT ./. ./. 0|1 -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT ./. ./. 0|1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT ./. ./. 1|0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT ./. ./. 1|0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT ./. ./. 0|1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT 1|0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT ./. ./. 1|1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT ./. ./. 0|1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT ./. ./. 1|0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT ./. ./. 0|1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT ./. ./. 0|1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT 0|1 ./. ./. -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT ./. ./. 0|1 -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT 1|0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT ./. ./. 0|1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT 1|0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT ./. ./. 0|1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT ./. ./. 0|1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT ./. ./. 0|1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT ./. ./. 0|1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT ./. ./. 0|1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT ./. ./. 0|1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT ./. ./. 0|1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT ./. ./. 0|1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT ./. ./. 0|1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT ./. ./. 0|1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT ./. ./. 0|1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT ./. ./. 0|1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT ./. ./. 1|0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT 1|0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT 1|0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT 1|0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT 1|0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT 1|0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT 1|0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT 1|0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT 1|0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT ./. ./. 0|1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT ./. ./. 1|0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT 1|0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT ./. ./. 0|1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT ./. ./. 0|1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT ./. ./. 1|0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT ./. ./. 0|1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT ./. ./. 1|1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT 1|0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT ./. ./. 1|0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT ./. ./. 1|0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT ./. ./. 1|0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT ./. ./. 1|0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT ./. ./. 1|0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT ./. ./. 1|0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT ./. ./. 1|0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT ./. ./. 0|1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT ./. ./. 0|1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT ./. ./. 1|0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT ./. ./. 1|0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT 1|0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT ./. ./. 1|1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT ./. ./. 1|0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT ./. ./. 1|0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT ./. ./. 0|1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT 1|0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT ./. ./. 1|0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT ./. ./. 1|0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT ./. ./. 1|0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT ./. ./. 1|0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT ./. 0|1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT 1|0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT ./. ./. 1|0 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT 1|1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT ./. 1|0 1|0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT ./. 0|1 0|1 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT ./. ./. 1|0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT ./. ./. 1|0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT ./. ./. 1|0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT ./. ./. 1|0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT ./. ./. 1|0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT ./. ./. 1|0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT ./. ./. 1|0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT ./. ./. 1|0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT ./. ./. 1|0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT 1|1 1|1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT ./. ./. 1|0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT 1|0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT 1|1 1|0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT ./. ./. 1|0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT ./. ./. 1|0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT ./. ./. 1|0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT ./. ./. 1|0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT ./. ./. 1|0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT ./. ./. 1|0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT ./. ./. 1|0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT ./. ./. 0|1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT ./. ./. 1|0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT ./. ./. 1|1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT ./. ./. 1|0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT ./. ./. 1|0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT ./. ./. 1|0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT ./. ./. 1|0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT ./. ./. 1|0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT 1|1 1|0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT ./. ./. 1|0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT ./. ./. 1|0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT ./. ./. 1|1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT ./. ./. 1|1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT ./. ./. 1|1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT ./. ./. 1|1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT ./. ./. 1|1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT ./. ./. 0|1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT ./. ./. 0|1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT ./. ./. 0|1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT ./. ./. 1|1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT ./. ./. 1|1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT ./. ./. 1|0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT ./. ./. 1|1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT ./. ./. 1|1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT ./. ./. 1|1 -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT ./. ./. 1|1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT ./. ./. 1|1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT ./. ./. 1|1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT ./. ./. 1|1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT ./. ./. 1|0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT ./. ./. 0|1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT ./. ./. 1|1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT ./. ./. 1|1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT 1|1 1|0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT ./. ./. 1|1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT ./. ./. 1|1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT ./. ./. 1|1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT ./. ./. 1|1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT ./. ./. 1|1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT ./. ./. 1|1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT 1|1 1|0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT ./. ./. 1|1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT ./. ./. 1|1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT 1|0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT ./. 0|1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT 1|0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT 0|1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT ./. ./. 1|1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT ./. ./. 1|1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT ./. 0|1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT ./. 0|1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT ./. ./. 1|1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT ./. 0|1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT ./. 0|1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT ./. ./. 0|1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT ./. ./. 1|1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT ./. ./. 1|0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT ./. ./. 0|1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT 1|1 1|0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT ./. 0|1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT ./. ./. 1|1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT ./. 0|1 1|1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT ./. ./. 1|1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT ./. ./. 1|1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT ./. ./. 1|1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT ./. ./. 1|1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT ./. ./. 1|1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT ./. ./. 1|1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT ./. ./. 0|1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT ./. 0|1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT ./. ./. 1|0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT ./. 0|1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT ./. ./. 1|0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT ./. 0|1 0|1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT ./. ./. 1|0 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT ./. 0|1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT 0|1 1|0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT ./. 0|1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT ./. ./. 1|1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT ./. 0|1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT ./. 0|1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT ./. 0|1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT ./. 0|1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT ./. 0|1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT 1|0 ./. ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT ./. ./. 1|0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT ./. ./. 0|1 -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT ./. 0|1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT ./. ./. 1|0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT 1|0 0|1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT ./. ./. 1|1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT ./. 1|0 ./. -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT 1|0 0|1 1|1 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 diff --git a/repo_utils/test_files/answer_key/divided/multi_4.vcf b/repo_utils/test_files/answer_key/divided/multi_4.vcf index 0e5cb68b..4e0462f1 100644 --- a/repo_utils/test_files/answer_key/divided/multi_4.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_4.vcf @@ -36,187 +36,189 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT ./. 0|1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT ./. 0|1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT ./. 0|1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT ./. 0|1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT ./. 0|1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT ./. ./. 0|1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT ./. 0|1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT ./. 0|1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT ./. 0|1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT ./. 0|1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT ./. 0|1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT ./. 0|1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT ./. 0|1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT ./. 0|1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT ./. 0|1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT ./. 0|1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT 1|0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT ./. 0|1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT ./. 0|1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT ./. 0|1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT ./. 0|1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT ./. 0|1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT ./. 0|1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT ./. 0|1 1|1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT ./. ./. 1|1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT ./. ./. 0|1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT ./. ./. 0|1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT ./. ./. 0|1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT ./. ./. 1|1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT ./. ./. 1|1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT 0|1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT 0|1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT ./. 0|1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT ./. ./. 1|0 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT ./. 1|0 ./. -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT ./. ./. 0|1 -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT ./. ./. 1|0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT ./. ./. 1|0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT ./. ./. 1|0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT ./. ./. 1|0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT ./. ./. 1|0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT ./. ./. 1|0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT ./. ./. 0|1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT ./. ./. 1|0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT ./. ./. 0|1 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT 1|0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT 1|0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT 1|0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT ./. ./. 1|0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT ./. ./. 1|0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT ./. ./. 1|0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT ./. ./. 1|0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT ./. ./. 1|0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT 1|0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT ./. ./. 1|0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT ./. ./. 1|0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT ./. ./. 1|0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT ./. ./. 1|0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT 1|0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT 1|0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT ./. ./. 1|0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT 1|0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT ./. ./. 1|0 -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184 GT 0/1 ./. ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188 GT ./. ./. 0/1 -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT 1|0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT 1|0 ./. ./. -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT 1/0 ./. ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT 0/1 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT ./. ./. 0/1 -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT ./. ./. 1/0 -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT ./. ./. 1|0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT ./. ./. 1|0 -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT ./. ./. 1/0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT 1|0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT 1|0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT ./. ./. 1|0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT ./. ./. 1|0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT ./. ./. 1|0 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT 1|0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT ./. ./. 1|0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT 1|0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT 1|0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT 1|0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT 1|0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT 1|0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT 1|0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT 1|0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT 1|0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT ./. ./. 1|0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT 1|0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT 1|0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT 1|0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT 1|0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT 1|0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT 1|0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT 1|0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT 1|0 ./. ./. -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT ./. ./. 1|0 -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT 1|0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT 1|0 ./. ./. -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT ./. ./. 1|0 -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT ./. ./. 0|1 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT 1|0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT ./. ./. 1|0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT ./. ./. 0|1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT 1|0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT ./. ./. 1|0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT ./. ./. 1|0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT 1|0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT 1|0 ./. ./. +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188 GT:DP:AD ./.:19:11,8 ./.:33:12,21 0/1:36:12,24 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 diff --git a/repo_utils/test_files/answer_key/divided/multi_5.vcf b/repo_utils/test_files/answer_key/divided/multi_5.vcf index 59b53c61..76d472df 100644 --- a/repo_utils/test_files/answer_key/divided/multi_5.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_5.vcf @@ -36,105 +36,107 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT ./. 0|1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT ./. ./. 0|1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT ./. 0|1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT ./. 0|1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT ./. ./. 0|1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT 0|1 1|1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT ./. ./. 0|1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT ./. 0|1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT ./. 0|1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT ./. 0|1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT ./. 0|1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT ./. 0|1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175 GT 1/1 ./. 1/1 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175 GT ./. 1/1 ./. -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT ./. ./. 0|1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT 0|1 1|0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT ./. 0|1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT ./. 1|0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT ./. 1|1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT ./. 1|0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT ./. 1|0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT 0|1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT ./. 1|0 0|1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT ./. 1|0 0|1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT ./. 1|0 0|1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT 0|1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT ./. ./. 0|1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT 1|0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT 1|0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT 0|1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT ./. ./. 0|1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT 0|1 ./. ./. -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT ./. ./. 0|1 -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT 1|0 ./. ./. -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT 0|1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT ./. ./. 1|0 -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT ./. ./. 0|1 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175 GT:DP:AD 1/1:34:18,16 ./.:32:19,13 1/1:25:13,12 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175 GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 diff --git a/repo_utils/test_files/answer_key/divided/multi_6.vcf b/repo_utils/test_files/answer_key/divided/multi_6.vcf index 1cb0458d..1df46068 100644 --- a/repo_utils/test_files/answer_key/divided/multi_6.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_6.vcf @@ -36,267 +36,269 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT 1|0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT ./. 1|0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT ./. 1|0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT ./. ./. 0|1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT ./. 1|0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT 1|0 0|1 ./. -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT ./. 1|1 0|1 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT ./. 1|0 ./. -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT ./. ./. 1|0 -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT 1|0 0|1 ./. -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT 0|1 ./. ./. -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT ./. ./. 0|1 -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT ./. 1|0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT ./. ./. 1|0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT ./. ./. 1|0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT ./. ./. 0|1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT ./. 1|0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT 0|1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT 0|1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT 0|1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT 1|0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT 0|1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT 0|1 1|0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT 1|0 ./. ./. -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT 0|1 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT ./. 0|1 ./. -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT ./. ./. 1|0 -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT ./. ./. 0|1 -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT ./. 1|0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT 0|1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT 0|1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT 0|1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT 0|1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT 0|1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT 0|1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT 0|1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT ./. ./. 1|0 -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT 0|1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT 0|1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT ./. ./. 1|0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT 0|1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT 0|1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT ./. 0|1 0|1 -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT ./. ./. 1|0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT 1|0 1|1 ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT ./. ./. 1|0 -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT 0|1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT 0|1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT 0|1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT 0|1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT ./. 1|0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT 1|0 1|0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT 0|1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT ./. 1|0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT 0|1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT 0|1 1|0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT ./. ./. 1|0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT ./. 1|0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT ./. 1|0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT ./. 1|0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT ./. 1|0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT ./. 1|0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT ./. 1|0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT ./. 1|0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT ./. 1|0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT ./. 1|0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT ./. 1|0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT ./. 1|0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT 0|1 1|1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT 1|0 0|1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT 1|0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT ./. 0|1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT 1|0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT ./. 0|1 1|0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT ./. 0|1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT ./. 1|0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT 0|1 1|0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT ./. 1|0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT ./. ./. 1|0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT ./. 1|0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT ./. ./. 1|0 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT ./. 1|0 ./. -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT ./. ./. 1|1 -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT ./. 1|0 1|0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT 1|0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT 1|0 0|1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT 1|0 1|1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT 1|0 0|1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT ./. 1|0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT ./. 1|0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT ./. 1|0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT ./. 1|0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT ./. 1|0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT 1|0 1|1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT 1|0 0|1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT ./. 1|0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT ./. 0|1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT ./. 0|1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT ./. 1|0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT ./. 1|0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT 1|0 ./. ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT ./. 0|1 ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT ./. 1|0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT ./. 1|0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT 0|1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT ./. 1|0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT 1|1 1|1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT ./. ./. 0|1 -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT ./. 1|1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT ./. 1|1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT ./. 1|1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT ./. 1|1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT 0|1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT ./. 0|1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT ./. 1|1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT ./. 1|1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT ./. 1|0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT ./. 1|1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT ./. 1|0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT ./. 1|1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT ./. 0|1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT ./. 1|1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT ./. 1|1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT ./. 1|1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT ./. 1|1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT ./. 1|1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT ./. 1|1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT ./. 1|1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT ./. 0|1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT ./. 1|1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT ./. 1|1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT ./. 1|1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT ./. 1|1 1|0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT ./. 1|1 1|0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT ./. 1|1 1|0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT ./. 1|1 1|0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT 1|0 1|1 ./. -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT ./. ./. 1|0 -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT ./. 1/0 ./. -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT ./. ./. 1/0 -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT ./. 1|0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT 1|0 ./. ./. -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT ./. ./. 1|0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT ./. ./. 1|0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT ./. 1|0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT ./. ./. 1|0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT ./. ./. 0|1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT ./. ./. 1|0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT ./. ./. 1|0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT ./. ./. 0|1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT ./. ./. 1|0 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 diff --git a/repo_utils/test_files/answer_key/divided/multi_7.vcf b/repo_utils/test_files/answer_key/divided/multi_7.vcf index dbd31c4c..5746eadb 100644 --- a/repo_utils/test_files/answer_key/divided/multi_7.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_7.vcf @@ -36,142 +36,144 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT ./. 0|1 1|0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT ./. ./. 0|1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT ./. 0|1 1|0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT ./. 0|1 ./. -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT ./. ./. 1|0 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT 0|1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT ./. ./. 1|0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT ./. 1|0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT ./. ./. 0|1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT ./. ./. 1|0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT ./. 1|0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT ./. 1|1 1|1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT 1|0 1|1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT ./. ./. 1|0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT 0|1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT ./. ./. 0|1 -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT ./. 1|0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT 1|0 1|0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT ./. 0|1 1|0 -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT ./. ./. 0|1 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT 1|0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT ./. 1|0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT 1|0 1|0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT 1|0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT ./. 0|1 1|0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT 0|1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT 0|1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT 0|1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT 1|0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT 1|0 1|0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT ./. ./. 1|0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT ./. 0|1 1|0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT ./. ./. 1|1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226 GT 1/0 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227 GT 0/1 ./. 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT 1|0 1|0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT 1|0 1|0 1|0 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226 GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227 GT:DP:AD 0/1:27:19,8 ./.:40:20,20 1/1:23:7,16 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 diff --git a/repo_utils/test_files/answer_key/divided/multi_8.vcf b/repo_utils/test_files/answer_key/divided/multi_8.vcf index ca221f87..546abb77 100644 --- a/repo_utils/test_files/answer_key/divided/multi_8.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_8.vcf @@ -36,105 +36,107 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT ./. 1|0 1|0 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT 0|1 ./. ./. -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT ./. ./. 1|1 -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT ./. 0|1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT ./. 1|0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT ./. ./. 1|1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT 1|1 1|0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT 1|1 1|0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT 1|1 1|0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT 1|0 1|0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT 1|1 1|0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT ./. ./. 1|1 -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT ./. ./. 0|1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT 1|0 ./. ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT ./. 1|0 1|0 -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT ./. ./. 1|0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT ./. 0|1 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT ./. ./. 1|0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT 1|0 1|0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT ./. ./. 0|1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT ./. ./. 1|0 -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT ./. ./. 0|1 -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT ./. ./. 1|1 -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT 1|0 ./. ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT 0|1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT ./. 1|0 ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT 0|1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT 1|0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT 1|0 ./. ./. -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT 0|1 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT ./. 0|1 1|1 -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT ./. ./. 0|1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT 0|1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT 1|0 1|0 ./. -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT ./. 0|1 1|0 -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT ./. ./. 0|1 -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT ./. ./. 0|1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT ./. 0|1 1|1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT 0|1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT 0|1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT 1|0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT 0|1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT ./. 0|1 ./. +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 diff --git a/repo_utils/test_files/answer_key/divided/multi_9.vcf b/repo_utils/test_files/answer_key/divided/multi_9.vcf index eb5795b2..8e0cc86e 100644 --- a/repo_utils/test_files/answer_key/divided/multi_9.vcf +++ b/repo_utils/test_files/answer_key/divided/multi_9.vcf @@ -36,105 +36,107 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT ./. 1|0 1|1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT 0|1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT ./. ./. 1|0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT ./. 1|0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT 1|0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT ./. ./. 1|0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT 1/0 ./. ./. -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT 0|1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT ./. 1|0 ./. -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT ./. 0|1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT ./. 0|1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT ./. 0|1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT 0|1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT 0|1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT ./. 0|1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT ./. ./. 1|1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT ./. 1|0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT ./. 1|0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT ./. 1|0 1|1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT ./. 1|0 ./. -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT 0|1 ./. ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT ./. ./. 1|1 -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT ./. 0|1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT ./. ./. 0|1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT ./. ./. 1|0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT 1|0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT 0|1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT ./. 1|0 1|0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT ./. 0|1 ./. -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT 1|0 ./. ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT ./. ./. 1|0 -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT ./. ./. 1|0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT ./. 1|0 1|0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT ./. ./. 1|0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT ./. 1|0 1|1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT ./. ./. 0|1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT 0|1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT ./. 1|0 1|1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT ./. 1|0 1|1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT ./. 1|0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT ./. 1|0 1|1 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT 0|1 ./. ./. -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT ./. ./. 0|1 -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT ./. 1|0 1|1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT ./. 1|0 0|1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT ./. 0|1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT ./. 1|1 1|1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT ./. 1|0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT 0|1 0|1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT 1|0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT 1|0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT ./. ./. 0|1 -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT 1|0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT 1|0 ./. ./. -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT ./. 1|0 ./. -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT ./. ./. 1|0 -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT ./. ./. 0|1 -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT 1|0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT ./. 0|1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT 1|0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT 1|0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT 1|0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT ./. 1|0 1|1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT 1|0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT 1|0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT 1|0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT 1|0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT ./. 0|1 ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT 1|0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT 1|0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT 1|0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT 1|0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT 1|0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT 1|0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT 1|0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT ./. ./. 0|1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT 1|0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT 1|0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT 1|0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT ./. 1|0 1|1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT 1|0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT ./. ./. 0|1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT 1|0 ./. ./. +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 diff --git a/repo_utils/test_files/answer_key/help.txt b/repo_utils/test_files/answer_key/help.txt index d30b73b8..a9233e6b 100644 --- a/repo_utils/test_files/answer_key/help.txt +++ b/repo_utils/test_files/answer_key/help.txt @@ -1,6 +1,6 @@ usage: truvari [-h] CMD ... -Truvari v3.2.0 - Structural Variant Benchmarking and Annotation +Truvari v3.3.0 - Structural Variant Benchmarking and Annotation CMDs: bench Performance metrics from comparison of two VCFs diff --git a/repo_utils/test_files/answer_key/input2_collapsed.vcf b/repo_utils/test_files/answer_key/input2_collapsed.vcf index 4d2a026e..f060a7cc 100644 --- a/repo_utils/test_files/answer_key/input2_collapsed.vcf +++ b/repo_utils/test_files/answer_key/input2_collapsed.vcf @@ -1135,8 +1135,8 @@ chr20 708422 . AT A 60 . QNAME=cluster19_000000F;QSTART=25052861;QSTRAND=- GT:PL chr20 708747 . C A 60 . QNAME=cluster19_000000F;QSTART=25052537;QSTRAND=- GT:PL:AD 1|0:6,10,10:48,32 chr20 708784 . G C 60 . QNAME=cluster19_000000F;QSTART=25052500;QSTRAND=- GT:PL:AD 1|0:2,2,1:18,7 chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:PL:AD 0|1:3,10,5:15,5 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:PL:AD 1/0:5,4,9:13,8 chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=725358;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:PL:AD 0/1:7,8,4:13,5 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:PL:AD 1/0:5,4,9:13,8 chr20 710789 . A C 60 . QNAME=cluster19_000000F;QSTART=25050588;QSTRAND=- GT:PL:AD 1|1:6,8,3:35,27 chr20 710948 . G A 60 . QNAME=cluster19_000000F;QSTART=671801;QSTRAND=+ GT:PL:AD 0|1:5,6,8:49,44 chr20 711177 . A G 60 . QNAME=cluster19_000000F;QSTART=25050200;QSTRAND=- GT:PL:AD 1|1:4,7,5:40,44 diff --git a/repo_utils/test_files/answer_key/multi_collapsed_common.vcf b/repo_utils/test_files/answer_key/multi_collapsed_common.vcf index 0ba9c9de..7416d3e8 100644 --- a/repo_utils/test_files/answer_key/multi_collapsed_common.vcf +++ b/repo_utils/test_files/answer_key/multi_collapsed_common.vcf @@ -36,3511 +36,3513 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT 1/1 1/1 1/0 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT ./. 1|0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT ./. 1|0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT ./. ./. 1|1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT ./. 1|0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT ./. ./. 0|1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT ./. ./. 0|1 -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT ./. 1|0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT ./. 1|0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT ./. ./. 0|1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT ./. ./. 1|0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT ./. ./. 0|1 -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT ./. 1|0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT ./. 1|0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT ./. 1|0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT ./. 1|0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT ./. 1|0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT ./. 0|1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT ./. ./. 1|0 -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT ./. 0|1 1|0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT ./. 1|0 ./. -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT ./. 1|0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT ./. 1|0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT ./. 1|0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT ./. 1|0 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT 1|1 ./. ./. -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT ./. 1|1 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT ./. ./. 1|0 -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT ./. 0|1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT 1|1 1|0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT 1|1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT ./. 1|0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT 1|1 1|1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT 1|1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT 1|1 1|0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT 1|1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT ./. 1|0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT 0|1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT ./. ./. 1|0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT 1|0 0|1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT ./. 1|1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT ./. 1|1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT ./. ./. 1|0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT 1|0 ./. ./. -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT 0|1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT ./. 1|1 1|0 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT ./. ./. 0|1 -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT 0|1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT ./. 1|1 1|0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT ./. ./. 1|0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT ./. ./. 1|0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT 1|0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT ./. 1|1 ./. -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT 1|1 ./. ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT ./. ./. 0|1 -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT 1|1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT ./. ./. 0|1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT ./. ./. 0|1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT ./. 1|1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT ./. 0|1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT 1|1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT ./. 1|0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT ./. 1|0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT ./. 1|0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT ./. ./. 0|1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT ./. 1|0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT ./. 0|1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT 0|1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT 1|1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT ./. 1|0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT ./. 1|0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT ./. 1|0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT ./. 1|0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT ./. 1|0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT ./. 1|0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT ./. 1|0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT 1|1 ./. ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT 0|1 0|1 ./. -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT ./. 1|0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT ./. 1|0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT ./. 1|0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT ./. 1|0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT 0|1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT 1|1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT ./. 1|0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT ./. ./. 0|1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT ./. 1|0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT ./. 1|0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT 1|1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT ./. 1|0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT ./. 1|0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT ./. 0|1 ./. -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT ./. 1|0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT ./. ./. 0|1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT ./. 1|0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT ./. ./. 0|1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT ./. 1|0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT ./. 1|0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT ./. 1|0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT ./. 1|0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT ./. 1|0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT ./. 1|0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT ./. 0|1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT ./. 1|0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT ./. 1|0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT ./. 1|0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT ./. 1|0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT 0|1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT ./. 1|0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT ./. 1|1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT ./. 1|0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT ./. 1|0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT ./. 1|0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT ./. ./. 1|0 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT 0|1 1|0 ./. -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT ./. ./. 1|1 -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT ./. 1|0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT ./. 1|0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT ./. 1|0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT ./. 1|0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT ./. 1|0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT ./. 1|0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT ./. 1|0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT 1|1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT ./. 1|0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT ./. 1|0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT ./. 1|1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT ./. 1|1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT ./. 1|1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT ./. 1|1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT ./. 1|1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT ./. 1|1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT ./. 1|1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT ./. 1|1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT ./. ./. 1|1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT 0|1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT ./. 1|1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT ./. ./. 1|1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT ./. ./. 1|1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT 1|1 ./. ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT ./. 1|1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;NumCollapsed=1;CollapseId=2.0 GT 0/1 ./. 0/1 -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT 1/0 ./. ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT 0/1 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT ./. ./. 0/1 -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT ./. ./. 1/0 -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT ./. ./. 0|1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT ./. ./. 1|0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT ./. 1|1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT ./. 1|1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT ./. 1|1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT ./. ./. 0|1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT 1|1 ./. ./. -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT ./. 1|1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT ./. ./. 0|1 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT 0|1 1|1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT ./. ./. 1|1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT ./. ./. 1|1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT 0|1 1|1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT ./. ./. 0|1 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT 1|0 ./. ./. -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT ./. ./. 1|0 -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT 0|1 1|1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT ./. ./. 0|1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT 0|1 1|1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT 0|1 1|1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT 1|0 ./. ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT ./. ./. 1|1 -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT 0|1 1|1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT ./. ./. 0|1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT 0|1 1|1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT 0|1 1|1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT ./. ./. 0|1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT 0|1 1|0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT ./. ./. 1|0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT 0|1 1|1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT ./. ./. 0|1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT ./. ./. 0|1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT 0|1 1|1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT ./. ./. 0|1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT 1|0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT ./. ./. 0|1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT 0|1 1|1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT ./. 0|1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT ./. ./. 0|1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT ./. ./. 0|1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT ./. ./. 0|1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT ./. ./. 0|1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT ./. ./. 0|1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT ./. ./. 0|1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT 0|1 1|1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT ./. ./. 0|1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT ./. ./. 0|1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT ./. ./. 0|1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT ./. ./. 0|1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT ./. ./. 0|1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT ./. ./. 0|1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT ./. ./. 0|1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT ./. ./. 0|1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT ./. ./. 0|1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT ./. ./. 0|1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT ./. ./. 0|1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT ./. ./. 0|1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT ./. ./. 0|1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT ./. ./. 0|1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT ./. ./. 0|1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT ./. 0|1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT 0|1 1|0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT ./. ./. 0|1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT ./. ./. 0|1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT ./. ./. 0|1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT ./. ./. 0|1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT ./. ./. 0|1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT ./. ./. 0|1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT ./. ./. 0|1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT ./. ./. 0|1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT ./. ./. 0|1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT 0|1 1|1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT ./. ./. 0|1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT ./. ./. 0|1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT ./. ./. 0|1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT ./. ./. 0|1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT ./. ./. 0|1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT ./. ./. 0|1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT ./. ./. 0|1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT ./. ./. 0|1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT ./. ./. 0|1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT ./. ./. 0|1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT ./. ./. 0|1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT 0|1 1|1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT ./. ./. 0|1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT ./. ./. 0|1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT ./. ./. 0|1 -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT ./. ./. 0|1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT 0|1 1|0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT ./. ./. 0|1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT ./. ./. 0|1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT ./. ./. 0|1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT ./. ./. 0|1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT ./. ./. 0|1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT ./. ./. 0|1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT ./. ./. 0|1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT ./. ./. 0|1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT ./. ./. 0|1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT ./. ./. 0|1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT ./. ./. 0|1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT ./. ./. 0|1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT ./. ./. 0|1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT ./. ./. 0|1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT ./. ./. 0|1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT ./. ./. 0|1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT ./. ./. 0|1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT 0|1 1|1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT ./. ./. 0|1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT ./. ./. 0|1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT 0|1 1|1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT ./. ./. 0|1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT 0|1 1|1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT ./. ./. 0|1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT ./. ./. 0|1 -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT ./. ./. 0|1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT 1|0 ./. ./. -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT ./. ./. 1|0 -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT ./. ./. 0|1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT ./. ./. 0|1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT ./. ./. 0|1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT ./. ./. 0|1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT 0|1 1|1 ./. -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT ./. ./. 1|0 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT ./. ./. 0|1 -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT ./. ./. 0|1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT ./. ./. 1|0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT ./. ./. 1|0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT ./. ./. 0|1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT 1|0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT ./. ./. 1|1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT ./. ./. 0|1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT ./. ./. 1|0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT ./. ./. 0|1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT ./. ./. 0|1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT 0|1 ./. ./. -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT ./. ./. 0|1 -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT 1|0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT ./. ./. 0|1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT 1|0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT ./. ./. 0|1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT ./. ./. 0|1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT ./. ./. 0|1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT ./. ./. 0|1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT ./. ./. 0|1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT ./. ./. 0|1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT ./. ./. 0|1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT ./. ./. 0|1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT ./. ./. 0|1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT ./. ./. 0|1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT ./. ./. 0|1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT ./. ./. 0|1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT ./. ./. 1|0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT 1|0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT 1|0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT 1|0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT 1|0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT 1|0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT 1|0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT 1|0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT 1|0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT ./. ./. 0|1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT ./. ./. 1|0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT 1|0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT ./. ./. 0|1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT ./. ./. 0|1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT ./. ./. 1|0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT ./. ./. 0|1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT ./. ./. 1|1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT 1|0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT ./. ./. 1|0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT ./. ./. 1|0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT ./. ./. 1|0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT ./. ./. 1|0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT ./. ./. 1|0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT ./. ./. 1|0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT ./. ./. 1|0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT ./. ./. 0|1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT ./. ./. 0|1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT ./. ./. 1|0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT ./. ./. 1|0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT 1|0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT ./. ./. 1|1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT ./. ./. 1|0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT ./. ./. 1|0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT ./. ./. 0|1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT 1|0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT ./. ./. 1|0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT ./. ./. 1|0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT ./. ./. 1|0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT ./. ./. 1|0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT ./. 0|1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT 1|0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT ./. ./. 1|0 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT 1|1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT ./. 1|0 1|0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT ./. 0|1 0|1 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT ./. ./. 1|0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT ./. ./. 1|0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT ./. ./. 1|0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT ./. ./. 1|0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT ./. ./. 1|0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT ./. ./. 1|0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT ./. ./. 1|0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT ./. ./. 1|0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT ./. ./. 1|0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT 1|1 1|1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT ./. ./. 1|0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT 1|0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT 1|1 1|0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT ./. ./. 1|0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT ./. ./. 1|0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT ./. ./. 1|0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT ./. ./. 1|0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT ./. ./. 1|0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT ./. ./. 1|0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT ./. ./. 1|0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT ./. ./. 0|1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT ./. ./. 1|0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT ./. ./. 1|1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT ./. ./. 1|0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT ./. ./. 1|0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT ./. ./. 1|0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT ./. ./. 1|0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT ./. ./. 1|0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT 1|1 1|0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT ./. ./. 1|0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT ./. ./. 1|0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT ./. ./. 1|1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT ./. ./. 1|1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT ./. ./. 1|1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT ./. ./. 1|1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT ./. ./. 1|1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT ./. ./. 0|1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT ./. ./. 0|1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT ./. ./. 0|1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT ./. ./. 1|1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT ./. ./. 1|1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT ./. ./. 1|0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT ./. ./. 1|1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT ./. ./. 1|1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT ./. ./. 1|1 -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT ./. ./. 1|1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT ./. ./. 1|1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT ./. ./. 1|1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT ./. ./. 1|1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT ./. ./. 1|0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT ./. ./. 0|1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT ./. ./. 1|1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT ./. ./. 1|1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT 1|1 1|0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT ./. ./. 1|1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT ./. ./. 1|1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT ./. ./. 1|1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT ./. ./. 1|1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT ./. ./. 1|1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT ./. ./. 1|1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT 1|1 1|0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT ./. ./. 1|1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT ./. ./. 1|1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT 1|0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT ./. 0|1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT 1|0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT 0|1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT ./. ./. 1|1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT ./. ./. 1|1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT ./. 0|1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT ./. 0|1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT ./. ./. 1|1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT ./. 0|1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT ./. 0|1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT ./. ./. 0|1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT ./. ./. 1|1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT ./. ./. 1|0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT ./. ./. 0|1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT 1|1 1|0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT ./. 0|1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT ./. ./. 1|1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT ./. 0|1 1|1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT ./. ./. 1|1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT ./. ./. 1|1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT ./. ./. 1|1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT ./. ./. 1|1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT ./. ./. 1|1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT ./. ./. 1|1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT ./. ./. 0|1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT ./. 0|1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT ./. ./. 1|0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT ./. 0|1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT ./. ./. 1|0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT ./. 0|1 0|1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT ./. ./. 1|0 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT ./. 0|1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT 0|1 1|0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT ./. 0|1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT ./. ./. 1|1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT ./. 0|1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT ./. 0|1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT ./. 0|1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT ./. 0|1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT ./. 0|1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT 1|0 ./. ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT ./. ./. 1|0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT ./. ./. 0|1 -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT ./. 0|1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT ./. ./. 1|0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT 1|0 0|1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT ./. ./. 1|1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT ./. 1|0 ./. -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT ./. 0|1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT ./. 0|1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT ./. 0|1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT ./. 0|1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT ./. 0|1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT ./. ./. 0|1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT ./. 0|1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT ./. 0|1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT ./. 0|1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT ./. 0|1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT ./. 0|1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT ./. 0|1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT ./. 0|1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT ./. 0|1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT ./. 0|1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT ./. 0|1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT 1|0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT ./. 0|1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT ./. 0|1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT ./. 0|1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT ./. 0|1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT ./. 0|1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT ./. 0|1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT ./. 0|1 1|1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT ./. ./. 1|1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT ./. ./. 0|1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT ./. ./. 0|1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT ./. ./. 0|1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT ./. ./. 1|1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT ./. ./. 1|1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT 0|1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT 0|1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT ./. 0|1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT ./. ./. 1|0 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT ./. 1|0 ./. -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT ./. ./. 0|1 -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT ./. ./. 1|0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT ./. ./. 1|0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT ./. ./. 1|0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT ./. ./. 1|0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT ./. ./. 1|0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT ./. ./. 1|0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT ./. ./. 0|1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT ./. ./. 1|0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT ./. ./. 0|1 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT 1|0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT 1|0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT 1|0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT ./. ./. 1|0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT ./. ./. 1|0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT ./. ./. 1|0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT ./. ./. 1|0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT ./. ./. 1|0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT 1|0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT ./. ./. 1|0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT ./. ./. 1|0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT ./. ./. 1|0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT ./. ./. 1|0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT 1|0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT 1|0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT ./. ./. 1|0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT 1|0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT ./. ./. 1|0 -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT 1|0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT 1|0 ./. ./. -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT ./. ./. 1|0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT ./. ./. 1/0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT ./. ./. 1|0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT 1|0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT 1|0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT ./. ./. 1|0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT ./. ./. 1|0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT ./. ./. 1|0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT 1/1 1/1 1/1 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT 1|0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT ./. ./. 1|0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT 1|0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT 1|0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT 1|0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT 1|0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT 1|0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT 1|0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT 1|0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT 1|0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT ./. ./. 1|0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT 1|0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT 1|0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT 1|0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT 1|0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT 1|0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT 1|0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT 1|0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT 1|0 ./. ./. -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT ./. ./. 1|0 -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT 1|0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT 1|0 ./. ./. -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT ./. ./. 1|0 -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT ./. ./. 0|1 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT 1|0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT ./. ./. 1|0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT ./. ./. 0|1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT 1|0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT ./. ./. 1|0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT ./. ./. 1|0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT 1|0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT 1|0 ./. ./. -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT ./. 0|1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT ./. ./. 0|1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT ./. 0|1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT ./. 0|1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT ./. ./. 0|1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT 0|1 1|1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT ./. ./. 0|1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT ./. 0|1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT ./. 0|1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT ./. 0|1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT ./. 0|1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT ./. 0|1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT ./. ./. 0|1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT 0|1 1|0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT ./. 0|1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT ./. 1|0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT ./. 1|1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT ./. 1|0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT ./. 1|0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT ./. 1/0 ./. -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT 0|1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT ./. 1|0 0|1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT ./. 1|0 0|1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT ./. 1|0 0|1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT 0|1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT ./. ./. 0|1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT 1|0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT 1|0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT 0|1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT ./. ./. 0|1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT 0|1 ./. ./. -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT ./. ./. 0|1 -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT 1|0 ./. ./. -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT 0|1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT ./. ./. 1|0 -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT ./. ./. 0|1 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT 1|0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT ./. 1|0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT ./. 1|0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT ./. ./. 0|1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT ./. 1|0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT 1|0 0|1 ./. -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT ./. 1|1 0|1 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT ./. 1|0 ./. -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT ./. ./. 1|0 -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT 1|0 0|1 ./. -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT 0|1 ./. ./. -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT ./. ./. 0|1 -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT ./. 1|0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT ./. ./. 1|0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT ./. ./. 1|0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT ./. ./. 0|1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT ./. 1|0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT 0|1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT 0|1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT 0|1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT 1|0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT 0|1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT 0|1 1|0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT 1|0 ./. ./. -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT 0|1 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT ./. 0|1 ./. -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT ./. ./. 1|0 -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT ./. ./. 0|1 -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT ./. 1|0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT 0|1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT 0|1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT 0|1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT 0|1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT 0|1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT 0|1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT 0|1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT ./. ./. 1|0 -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT 0|1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT 0|1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT ./. ./. 1|0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT 0|1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT 0|1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT ./. 0|1 0|1 -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT ./. ./. 1|0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT 1|0 1|1 ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT ./. ./. 1|0 -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT 0|1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT 0|1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT 0|1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT 0|1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT ./. 1|0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT 1|0 1|0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT 0|1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT ./. 1|0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT 0|1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT 0|1 1|0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT ./. ./. 1|0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT ./. 1|0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT ./. 1|0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT ./. 1|0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT ./. 1|0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT ./. 1|0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT ./. 1|0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT ./. 1|0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT ./. 1|0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT ./. 1|0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT ./. 1|0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT ./. 1|0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT 0|1 1|1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT 1|0 0|1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT 1|0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT ./. 0|1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT 1|0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT ./. 0|1 1|0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT ./. 0|1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT ./. 1|0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT 0|1 1|0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT ./. 1|0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT ./. ./. 1|0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT ./. 1|0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT ./. ./. 1|0 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT ./. 1|0 ./. -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT ./. ./. 1|1 -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT ./. 1|0 1|0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT 1|0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT 1|0 0|1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT 1|0 1|1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT 1|0 0|1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT ./. 1|0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT ./. 1|0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT ./. 1|0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT ./. 1|0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT ./. 1|0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT 1|0 1|1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT 1|0 0|1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT ./. 1|0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT ./. 0|1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT ./. 0|1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT ./. 1|0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT ./. 1|0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT 1|0 ./. ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT ./. 0|1 ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT ./. 1|0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT ./. 1|0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT 0|1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT ./. 1|0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT 1|1 1|1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT ./. ./. 0|1 -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT ./. 1|1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT ./. 1|1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT ./. 1|1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT ./. 1|1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT 0|1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT ./. 0|1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT ./. 1|1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT ./. 1|1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT ./. 1|0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT ./. 1|1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT ./. 1|0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT ./. 1|1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT ./. 0|1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT ./. 1|1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT ./. 1|1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT ./. 1|1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT ./. 1|1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT ./. 1|1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT ./. 1|1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT ./. 1|1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT ./. 0|1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT ./. 1|1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT ./. 1|1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT ./. 1|1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT ./. 1|1 1|0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT ./. 1|1 1|0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT ./. 1|1 1|0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT ./. 1|1 1|0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT 1|0 1|1 ./. -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT ./. ./. 1|0 -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT ./. ./. 1/0 -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT ./. 1|0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT 1|0 ./. ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;NumCollapsed=1;CollapseId=6.0 GT 1/0 1/1 1/1 -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT ./. ./. 1|0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT ./. ./. 1|0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT ./. 1|0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT ./. ./. 1|0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT ./. ./. 0|1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT ./. ./. 1|0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT ./. ./. 1|0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT ./. ./. 0|1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT ./. ./. 1|0 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT ./. 0|1 1|0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT ./. ./. 0|1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT ./. 0|1 1|0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT ./. 0|1 ./. -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT ./. ./. 1|0 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT 0|1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT ./. ./. 1|0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT ./. 1|0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT ./. ./. 0|1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT ./. ./. 1|0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT ./. 1|0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT ./. 1|1 1|1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT 1|0 1|1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT ./. ./. 1|0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT 0|1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT ./. ./. 0|1 -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT ./. 1|0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT 1|0 1|0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT ./. 0|1 1|0 -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT ./. ./. 0|1 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT 1|0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT ./. 1|0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT 1|0 1|0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT 1|0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT ./. 0|1 1|0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT 0|1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT 0|1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT 0|1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT 1|0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT 1|0 1|0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT ./. ./. 1|0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT ./. 0|1 1|0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT ./. ./. 1|1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT 1/1 1/0 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT 1|0 1|0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT 1|0 1|0 1|0 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT ./. 1|0 1|0 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT 0|1 ./. ./. -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT ./. ./. 1|1 -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT ./. 0|1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT ./. 1|0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT ./. ./. 1|1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT 1|1 1|0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT 1|1 1|0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT 1|1 1|0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT 1|0 1|0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT 1|1 1|0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT ./. ./. 1|1 -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT ./. ./. 0|1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT 1|0 ./. ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT ./. 1|0 1|0 -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT ./. ./. 1|0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT ./. 0|1 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT ./. ./. 1|0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT 1|0 1|0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT ./. ./. 0|1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT ./. ./. 1|0 -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT ./. ./. 0|1 -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT ./. ./. 1|1 -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT 1|0 ./. ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT 0|1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT ./. 1|0 ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT 0|1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT 1|0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT 1|0 ./. ./. -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT 0|1 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT ./. 0|1 1|1 -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT ./. ./. 0|1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT 0|1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT 1|0 1|0 ./. -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT ./. 0|1 1|0 -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT ./. ./. 0|1 -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT ./. ./. 0|1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT ./. 0|1 1|1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT 0|1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT 0|1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT 1|0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT 0|1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT ./. 0|1 ./. -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT ./. 1|0 1|1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT 0|1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT ./. ./. 1|0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT ./. 1|0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT 1|0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT ./. ./. 1|0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT 1/0 ./. ./. -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT 0|1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT ./. 1|0 ./. -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT ./. 0|1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT ./. 0|1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT ./. 0|1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT 0|1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT 0|1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT ./. 0|1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT ./. ./. 1|1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT ./. 1|0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT ./. 1|0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT ./. 1|0 1|1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT ./. 1|0 ./. -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT 0|1 ./. ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT ./. ./. 1|1 -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT ./. 0|1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT ./. ./. 0|1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT ./. ./. 1|0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT 1|0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT 0|1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT ./. 1|0 1|0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT ./. 0|1 ./. -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT 1|0 ./. ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT ./. ./. 1|0 -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT ./. ./. 1|0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT ./. 1|0 1|0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT ./. ./. 1|0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT ./. 1|0 1|1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT ./. ./. 0|1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT 0|1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT ./. 1|0 1|1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT ./. 1|0 1|1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT ./. 1|0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT ./. 1|0 1|1 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT 0|1 ./. ./. -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT ./. ./. 0|1 -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT ./. 1|0 1|1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT ./. 1|0 0|1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT ./. 0|1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT ./. 1|1 1|1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT ./. 1|0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT 0|1 0|1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT 1|0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT 1|0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT ./. ./. 0|1 -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT 1|0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT 1|0 ./. ./. -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT ./. 1|0 ./. -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT ./. ./. 1|0 -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT ./. ./. 0|1 -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT 1|0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT ./. 0|1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT 1|0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT 1|0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT 1|0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT ./. 1|0 1|1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT 1|0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT 1|0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT 1|0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT 1|0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT ./. 0|1 ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT 1|0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT 1|0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT 1|0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT 1|0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT 1|0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT 1|0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT 1|0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT ./. ./. 0|1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT 1|0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT 1|0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT 1|0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT ./. 1|0 1|1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT 1|0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT ./. ./. 0|1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT 1|0 ./. ./. -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT 1|0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT 1|0 0|1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT 1|0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT ./. 1|0 0|1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT ./. ./. 1|0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT 1|0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT 1|0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT 1|0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT 1|0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT 1|0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT 1|0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT ./. 1|0 1|1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT ./. 1|0 1|1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT ./. 1|0 1|1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT ./. 1|0 1|1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT ./. 1|0 1|1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT ./. 1|0 1|1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT ./. 1|0 1|1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT ./. 1|0 1|1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT 1|0 ./. ./. -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT 0|1 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT ./. 1|0 1|1 -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT ./. 1|0 1|1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT ./. 1|0 1|1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT 1|0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT 0|1 1|0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT ./. ./. 1|0 -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT ./. ./. 0|1 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT ./. 0|1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT ./. 0|1 1|1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT ./. 0|1 0|1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT 0|1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT 1|0 1|0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT 1|1 1|0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT 0|1 1|0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT 1|1 1|0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT ./. 0|1 1|1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT ./. 0|1 1|1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT ./. 1|0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT 1|1 1|0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT ./. 1|1 1|1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT 1|1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT ./. ./. 1|0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT ./. ./. 0|1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT ./. 1|1 1|1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT ./. 1|1 1|0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT ./. 1|1 1|1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT 1|0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT 1|1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT ./. ./. 1|0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT 1|1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT 1|1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT 1|0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT 0|1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT 0|1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT ./. ./. 1|0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT 0|1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT 1|0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT 0|1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT 0|1 1|0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT ./. 1|1 1|1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT 0|1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT ./. 1|1 1|1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT ./. 1|1 1|1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT ./. 1|1 0|1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT ./. ./. 1|0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT ./. 1|1 1|1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT 0|1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT ./. 1|1 1|1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT ./. 1|0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT 1|0 ./. ./. -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT 1|0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT ./. 1|0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT ./. 1|0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT ./. 1|1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT ./. 0|1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT ./. 1|1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT ./. 1|1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT ./. 1|1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT 1|0 1|1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT 1|0 1|0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT 0|1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT 1|1 1|1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT 1|0 ./. ./. -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT ./. 1|1 ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT 1|0 1|1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT ./. 1|1 1|0 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT 1|0 1|1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT ./. 1|1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT 1|0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT ./. 1|1 ./. -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT ./. ./. 0|1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT 0|1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT ./. 1|0 ./. -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT ./. ./. 1|0 -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT 0|1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT ./. ./. 0|1 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT 1|0 0|1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT ./. 1|0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT 1|0 1|1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT 0|1 ./. ./. -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT ./. ./. 0|1 -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT 0|1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT ./. ./. 1|0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT ./. ./. 1|0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT ./. 0|1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT ./. 0|1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT ./. ./. 1|0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT ./. ./. 1|0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT 1|0 1|1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT ./. 1|0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT ./. ./. 1|0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT ./. ./. 1|1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT 1|0 1|1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT ./. ./. 1|1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT 0|1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT 0|1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT ./. 0|1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT 0|1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT ./. 1|0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT ./. 0|1 ./. -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT 1/0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT ./. ./. 0/1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT 0/1 ./. ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.4 GT ./. 0/1 ./. -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT ./. ./. 1/0 -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT 1/0 ./. ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT ./. ./. 0/1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT ./. ./. 1/0 -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT 0|1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT 1|0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT ./. 0|1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT ./. 0|1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT 0|1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT 0|1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT ./. ./. 1|1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT 0|1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT 0|1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT 0|1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT 0|1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT 0|1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT 0|1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT 0|1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT 0|1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT 0|1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT 0|1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT 0|1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT 0|1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT 0|1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT 0|1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT 0|1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT 0|1 1|1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT 0|1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT ./. 1|0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT ./. ./. 0|1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT 1|0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT ./. ./. 0|1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT 1|0 ./. ./. -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT 1|0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT 1|0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT 1|0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT 1|0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT 1|0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT ./. 1|0 0|1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT 1|0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT 1|0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT ./. 1|0 0|1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT 1|0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT ./. 1|0 0|1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT 1|0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT ./. 1|0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT ./. ./. 1|1 -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT 1|0 1|0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT 1|0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT ./. 1|0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT ./. 1|0 0|1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT ./. ./. 0|1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT 1|0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT ./. ./. 0|1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT ./. ./. 1|0 -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT ./. ./. 0|1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT 1|0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT ./. ./. 0|1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT ./. 1|0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT 1|0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT 1|0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT 1|0 ./. ./. -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT 1|0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT ./. ./. 0|1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT 1|0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT 1|0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT ./. ./. 0|1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT ./. ./. 1|1 -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT 1|0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT ./. ./. 1|0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT 1|1 0|1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT 1|0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT ./. 0|1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT ./. 1|0 ./. -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT ./. 1|1 ./. -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT 1|0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT ./. ./. 0|1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT ./. 0|1 ./. -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT ./. ./. 0|1 -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT 1|0 ./. ./. -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT 0/1 1/0 1/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT 1/0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT 1|0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT ./. ./. 0|1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT 1|0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT ./. ./. 0|1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT ./. ./. 0|1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT 1|0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT ./. ./. 0|1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT ./. ./. 0|1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT 1|0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT 1|0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT 1|0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT 0|1 ./. ./. -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT ./. 1|0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT ./. ./. 1|1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT 0|1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT ./. ./. 0|1 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT 0|1 ./. ./. -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT 1|0 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT ./. ./. 1|0 -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT 0|1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT ./. ./. 0|1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT ./. ./. 0|1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT 0|1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT 0|1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT 0|1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT ./. 1|0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT 1|0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT ./. ./. 0|1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT 1|1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT 1|0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT ./. ./. 0|1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT ./. ./. 0|1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT ./. 1|0 0|1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT 1|1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT 0|1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT 0|1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT 1|0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT ./. 1|0 1|0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT 0|1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT 0|1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT 1|0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT ./. 1|0 1|0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT ./. 0|1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT 1|0 0|1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT ./. ./. 1|0 -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT 1|0 ./. ./. -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT ./. 0|1 ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT 1|1 0|1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT 0|1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT ./. ./. 0|1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT ./. ./. 1|0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT ./. 0|1 0|1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT ./. ./. 1|0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT ./. 0|1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT ./. ./. 0|1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT 1|0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT 1|0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT 1|0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT 1|0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT ./. ./. 1|0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT 0|1 1|1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT ./. ./. 0|1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT ./. 1|1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT ./. ./. 1|1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT ./. ./. 1|1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT 0|1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT ./. 0|1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT 0|1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT ./. ./. 1|1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT ./. ./. 1|1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT ./. ./. 1|1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT 1|0 ./. ./. -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT ./. ./. 1|1 -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT ./. ./. 1|1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT ./. ./. 1|1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT 0|1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT ./. ./. 1|1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT ./. ./. 1|1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT ./. ./. 1|1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT ./. ./. 1|1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT ./. ./. 1|1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT ./. ./. 1|1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT ./. ./. 1|1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT ./. ./. 1|1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT ./. ./. 1|1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT 0|1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT ./. ./. 1|1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT ./. ./. 0|1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT ./. ./. 1|1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT ./. ./. 1|1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT ./. ./. 1|1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT ./. ./. 1|1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT ./. ./. 1|1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT ./. ./. 1|1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT ./. ./. 1|1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT ./. ./. 1|1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT ./. ./. 1|1 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT 0|1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT ./. ./. 1|1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT ./. ./. 1|1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT 1|0 1|0 ./. -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT 0|1 0|1 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT ./. ./. 1|1 -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT ./. 1|0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT 0|1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT 0|1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT ./. ./. 0|1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT ./. ./. 0|1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT ./. 0|1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT 1|0 1|1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT ./. ./. 0|1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT 1|0 1|1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT ./. ./. 0|1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT 0|1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT ./. 1|0 0|1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT ./. 1|0 0|1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT ./. 0|1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT ./. 1|0 0|1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT ./. 1|0 0|1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT 1|0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT ./. 0|1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT ./. 1|0 0|1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT ./. 1|0 0|1 -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT 1|0 ./. ./. -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT 0|1 ./. ./. -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT ./. ./. 1|0 -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT ./. 1|0 0|1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT 0|1 ./. ./. -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT ./. 1|0 0|1 -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT ./. 1|0 0|1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT ./. 1|0 0|1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT ./. 1|0 0|1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT ./. 1|0 0|1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT 1|0 0|1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT ./. 1|0 0|1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT 0|1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT 1|0 1|1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT ./. ./. 0|1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT ./. 0|1 ./. -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT 1|0 1|0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT ./. ./. 0|1 -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT ./. 0|1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT ./. ./. 0|1 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT ./. 1/0 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT 1/1 0/1 ./. -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT ./. ./. 0|1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT ./. ./. 0|1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT 0|1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT ./. ./. 0|1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT 1|1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT ./. 1|0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT 1|0 ./. ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT ./. 1|0 ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT ./. 1|0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT ./. 1|0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT 1|1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT ./. 1|0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT ./. 1|0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT 1|1 1|0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT ./. ./. 0|1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT ./. 1|0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT ./. 1|0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT ./. 1|0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT ./. 0|1 1|0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT ./. ./. 0|1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT ./. ./. 1|0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT ./. 0|1 1|0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT ./. 0|1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT ./. 0|1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT ./. 1|0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT ./. 1|1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT ./. 0|1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT ./. 0|1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT ./. 1|0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT ./. 0|1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT ./. 1|1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT ./. 1|1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT ./. 1|1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT ./. 1|0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT ./. 1|1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT ./. 1|1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT ./. 1|1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT ./. 1|1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT ./. 1|1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT ./. 0|1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT ./. 1|1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT ./. 0|1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT ./. 1|1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT ./. 1|1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT ./. 1|1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT ./. 0|1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT ./. 0|1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT ./. 1|0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT ./. 0|1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT ./. 0|1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT ./. 1|0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT ./. 0|1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT 0|1 1|0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT ./. 0|1 ./. -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT ./. 0|1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT ./. 0|1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT ./. ./. 1|0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT 1|0 ./. ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT ./. 1/0 ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT ./. 0/1 ./. -chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT 0/1 ./. 1/0 -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT ./. ./. 1|0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT ./. ./. 1|0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT 0|1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT 0|1 1|1 ./. -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT 0|1 1|0 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT ./. ./. 1|0 -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT 1|0 1|0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT ./. ./. 1|0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT ./. 0|1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT ./. ./. 0|1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT 1|0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT 1|0 ./. ./. -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT ./. ./. 1|0 -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT 1|0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT ./. ./. 1|0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT 1|0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT 1|0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT 0|1 ./. ./. -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT ./. 0|1 ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT ./. ./. 1|0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT ./. ./. 1|0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT ./. ./. 1|0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT ./. 0|1 ./. -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT 1|0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT ./. 0|1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT ./. ./. 1|0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT 1|0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT ./. 0|1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT ./. ./. 1|0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT 1|0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT ./. ./. 1|0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT 1|0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT ./. ./. 1|0 -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT 0|1 ./. ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT ./. 1|0 ./. -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT ./. 0|1 ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT 1|0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT 1|0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT 0|1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT ./. ./. 1|0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT ./. ./. 0|1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT 1|0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT ./. ./. 1|0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT ./. 0|1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT 1|0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT ./. ./. 1|0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT 1|0 ./. ./. -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT ./. ./. 1|0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT ./. ./. 1|0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT 1|0 0|1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT ./. 0|1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT ./. ./. 1|0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT ./. 1|0 1|1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT ./. ./. 1|0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT ./. 0|1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT 0/1 1/0 0/1 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT 1|0 0|1 ./. -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT ./. ./. 1|0 -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT ./. ./. 1|0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT ./. 1|0 ./. -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT ./. ./. 1|0 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 0/1 ./. ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT 1|0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT ./. ./. 1|0 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT ./. ./. 1|0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT ./. ./. 1|0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT ./. ./. 1|0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT 1|0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT ./. ./. 1|0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT ./. 1|0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT 1|0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT 1|0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT ./. ./. 1|0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT 1|0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT ./. 0|1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT 1|0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT ./. ./. 1|0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT 1|0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT ./. ./. 1|0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT ./. ./. 1|0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT ./. ./. 1|0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT ./. ./. 1|0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT 1|0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT 1|0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT ./. ./. 1|0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT ./. ./. 1|0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT ./. ./. 1|0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT ./. 0|1 ./. -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT 1|0 ./. ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT ./. ./. 1|0 -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT ./. ./. 1|0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT ./. 1|0 1|0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT ./. 1|1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT ./. 1|0 1|1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT ./. ./. 1|0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT ./. 1|0 1|0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT ./. 1|0 1|0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT ./. 1|0 1|0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT ./. 1|0 1|0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT ./. 1|0 1|0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT 1|1 0|1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT 1|1 0|1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT ./. ./. 0|1 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT 0/1 ./. 1/0 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT ./. 1|0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT 1|1 0|1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT ./. 1|0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT ./. 1|0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT ./. ./. 0|1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT 1|1 0|1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT ./. 1|0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT ./. 1|0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT ./. ./. 1|0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT ./. 1|0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT 1|1 0|1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT ./. ./. 1|0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT 1|1 0|1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT ./. 0|1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT ./. ./. 1|0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT 1|1 0|1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT 1|1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT ./. ./. 1|0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT 1|1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT ./. 1|0 ./. -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT ./. 0|1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT ./. ./. 1|0 -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT ./. 1|1 1|0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT ./. 1|1 ./. -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT ./. ./. 1|0 -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT ./. ./. 0|1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT 1|0 1|1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT ./. ./. 1|0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT 1|1 0|1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT ./. ./. 0|1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT ./. ./. 0|1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT ./. 0|1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT 0|1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT ./. 0|1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT ./. 0|1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT ./. 1|0 1|1 -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT ./. 0|1 ./. -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT ./. 1|0 1|1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT ./. 1|1 1|1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT ./. 1|1 1|1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT ./. 1|1 1|1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT ./. 0|1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT 1|0 0|1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT 0|1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT 1|1 0|1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT ./. 0|1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT ./. 0|1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT 1|1 ./. ./. -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT ./. 0|1 ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT ./. ./. 0|1 -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT ./. 1|0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT ./. ./. 0|1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT ./. 1|1 1|1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT ./. 1|1 1|1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT ./. 1|0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT ./. 0|1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT 1|1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT 1|0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT ./. 1|0 1|1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT ./. 1|0 1|1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT ./. 0|1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT 1|1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT ./. 1|0 1|1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT ./. 0|1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT 1|1 0|1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT ./. 1|0 1|1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT ./. ./. 1|0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT ./. ./. 0|1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT ./. 1|0 1|1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT ./. 1|0 1|1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT ./. 1|0 1|1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT ./. 0|1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT 1|1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT ./. 1|0 1|1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT ./. 1|0 1|1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT ./. 1|0 1|1 -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT ./. 0|1 ./. -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT ./. 1|0 1|1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT ./. 1|0 1|1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT ./. 1|0 1|1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT 1|1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT ./. 0|1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT ./. 1|1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT ./. ./. 1|0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT 0|1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT ./. 1|0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT 0|1 ./. ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT ./. 1|0 1|1 -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT ./. 0|1 ./. -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT ./. 0|1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT ./. 1|0 1|1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT ./. 1|0 0|1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT ./. 1|0 1|1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT ./. 1|0 1|1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT ./. ./. 1|0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT ./. 1|0 1|1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT ./. ./. 1|0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT ./. ./. 1|0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT 0|1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT ./. 1|0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT ./. ./. 0|1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT ./. 1|0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT ./. ./. 0|1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT 0|1 1|1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT 0|1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT ./. 0|1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT 1|0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT 1|0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT 1|1 0|1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT 0|1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT 1|0 ./. ./. -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT 0|1 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT ./. 1|0 1|1 -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT ./. 1|0 1|1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT ./. 1|0 1|1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT 1|0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT 1|0 ./. ./. -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT 0/1 1/0 1/1 -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT 1|0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT 1|0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT 1|0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT ./. 1|0 1|1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT 1|0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT 1|0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT 1|0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT 1|0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT 1|0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT 1|0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT 1|0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT 1|0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT 1|0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT 1|0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT 1|0 ./. ./. -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT ./. 1|0 0|1 -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT ./. ./. 1|0 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT 1|0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT 1|0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT 1|0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT 1|1 1|0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT ./. 0|1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT 0|1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT ./. 1|1 1|1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT ./. 1|1 1|1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT 1|0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT ./. 1|1 1|1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT ./. 1|1 1|1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT ./. 1|1 1|1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT ./. 1|1 1|1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT ./. 1|1 1|1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT ./. 1|1 1|1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT 1|1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT 1|0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT ./. 1|1 1|1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT ./. 1|1 1|1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT ./. 1|1 1|1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT ./. 1|1 1|1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT ./. 1|1 1|1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT ./. ./. 0|1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT ./. 1|1 1|1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT ./. ./. 0|1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT ./. 1|1 1|1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT ./. ./. 0|1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT ./. 1|1 1|1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT ./. ./. 1|0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT ./. 1|1 1|1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT ./. 1|1 1|1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT ./. 1|1 1|1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT ./. ./. 0|1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT ./. 1|1 1|1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT ./. 1|1 1|1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT ./. ./. 0|1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT ./. 1|1 1|1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT ./. ./. 0|1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT ./. 1|1 1|0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT ./. ./. 0|1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT ./. 1|1 1|1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT ./. 1|1 1|1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT 1|1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT ./. 1|0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT 1|1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT 1|1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT 1|1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT 1|1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT 1|1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT ./. 1|1 1|1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT ./. ./. 0|1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT 1|1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT 1|1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT ./. 1|1 1|1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT ./. 1|1 0|1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT ./. ./. 0|1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT ./. ./. 0|1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT ./. 1|1 0|1 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT ./. 1|1 0|1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT ./. 1|1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT ./. ./. 0|1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT 0|1 ./. ./. -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT ./. ./. 0|1 -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT ./. ./. 0|1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT ./. 1|0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT 0|1 0|1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT ./. 1|0 0|1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT ./. 1|1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT ./. 1|1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT 1|0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT ./. ./. 0|1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT ./. ./. 0|1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT ./. ./. 0|1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT ./. ./. 0|1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT ./. ./. 1|0 -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT 1|0 ./. ./. -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT 0|1 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT ./. ./. 0|1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT ./. ./. 0|1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT ./. 1|1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT ./. ./. 0|1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT ./. 1|1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT 0|1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT ./. 0|1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT 0|1 ./. ./. -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT ./. 1|1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT ./. ./. 0|1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT ./. 1|1 0|1 -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT ./. 1|1 ./. -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT ./. ./. 0|1 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT ./. ./. 0|1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT ./. 1|1 0|1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT ./. ./. 0|1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT ./. 1|1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT ./. ./. 1|0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT ./. 1|1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT ./. ./. 0|1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT ./. 1|1 0|1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT ./. ./. 0|1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT ./. 1|1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT ./. 1|1 0|1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT 1|0 ./. ./. -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT ./. 1|1 0|1 -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT ./. 1|1 0|1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT ./. 1|1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT ./. 1|1 0|1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT ./. 0|1 1|1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT ./. 1|1 0|1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT ./. 1|1 0|1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT ./. ./. 0|1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT ./. 1|1 0|1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT ./. 1|0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT ./. 1|0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT ./. ./. 1|0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT ./. 1|1 0|1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT ./. ./. 0|1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT 1|1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT ./. ./. 1|0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT ./. ./. 0|1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT ./. 1|1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT ./. 1|1 0|1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT ./. ./. 0|1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT ./. ./. 0|1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT ./. 0|1 0|1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT ./. ./. 0|1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT ./. ./. 0|1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT ./. ./. 0|1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT ./. ./. 0|1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT 1|0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT 1|0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT ./. ./. 0|1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT ./. 0|1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT ./. ./. 0|1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT ./. 0|1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT ./. 1|0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT ./. 0|1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT ./. 0|1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT ./. 0|1 ./. -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT ./. ./. 0|1 -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT 0|1 ./. ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT ./. 1|0 1|0 -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT ./. 0|1 ./. -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT ./. 0|1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT ./. 0|1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT ./. 0|1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT ./. 1|0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT ./. 0|1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT ./. 0|1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT ./. 0|1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT 1|0 1|1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT 0|1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT 1|0 0|1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT ./. 0|1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT ./. ./. 0|1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT ./. 0|1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT 1|0 0|1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT ./. ./. 0|1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT ./. 1|0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT ./. ./. 0|1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT ./. 0|1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT 0|1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT ./. 1|0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT 1|0 0|1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT ./. ./. 0|1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT ./. ./. 1|0 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT ./. ./. 0|1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT ./. ./. 0|1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT ./. 1|0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT ./. ./. 0|1 -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT 1|0 ./. ./. -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT ./. 1|0 ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT ./. ./. 0|1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT ./. ./. 0|1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT ./. ./. 0|1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT ./. ./. 0|1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT ./. ./. 0|1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT ./. ./. 0|1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT ./. ./. 0|1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT ./. 1|0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT ./. ./. 0|1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT ./. ./. 0|1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT ./. ./. 0|1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT ./. ./. 0|1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT ./. ./. 0|1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT ./. ./. 0|1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT 0|1 1|0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT ./. ./. 0|1 -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT ./. ./. 0|1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT 1|0 0|1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT ./. ./. 1|0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT 1|0 0|1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT 1|0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT 1|0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT 1|0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT ./. ./. 0|1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT 1|0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT 1|0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT 1|0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT ./. 1|0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT 1|0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT 1|0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT 1|0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT ./. 1|0 ./. -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT 1|0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT 1|0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT 1|0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT 1|0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT 1|0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT ./. 1|0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT ./. 1|0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT ./. 1|0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT 1|1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT ./. 1|0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT 0|1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT 0|1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT 0|1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT 0|1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT 0|1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT 0|1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT 0|1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT 0|1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT 0|1 0|1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT 0|1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT 0|1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT 0|1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT 0|1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT 0|1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT 0|1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT 0|1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT 0|1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT 0|1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT 0|1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT 0|1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT 0|1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT 0|1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT 0|1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT 0|1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT ./. ./. 0|1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT ./. 0|1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT ./. ./. 0|1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT 1|0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT ./. ./. 0|1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT ./. 0|1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT 1|0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT 1|0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT 1|0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT 1|0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT 1|0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT 1|0 1|0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT ./. 1|0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT 1|0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT 0|1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT ./. 0|1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT ./. 0|1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT ./. 0|1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT 0|1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT ./. 0|1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT ./. 0|1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT ./. 0|1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT ./. ./. 0|1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT ./. 0|1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT ./. 1|0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT ./. 1|0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT 1|0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT 0|1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT ./. 0|1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT ./. 0|1 0|1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT ./. 0|1 0|1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT ./. ./. 0|1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT ./. ./. 0|1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT ./. 0|1 0|1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT 0|1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT ./. 0|1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT ./. 0|1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT ./. 1|0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT ./. 0|1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT ./. 1|1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT ./. 1|1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT ./. 1|1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT ./. 1|1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT ./. 1|1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT ./. 1|1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT ./. 1|1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT ./. 1|1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT ./. 1|1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT ./. 1|1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT ./. 1|1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT ./. 1|1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT ./. 1|1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT ./. 1|1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT 0|1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT ./. 1|1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT ./. 1|1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT ./. ./. 0|1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT ./. 1|0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT ./. 1|0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT ./. 1|0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT ./. 1|0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT ./. 1|0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT ./. 1|0 ./. -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT ./. 1|1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT ./. 1|1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT ./. 0|1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT ./. 1|1 0|1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT 0|1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT 0|1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT ./. 1|1 0|1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT ./. 1|1 0|1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT 0|1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT ./. 1|1 0|1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT 0|1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT ./. ./. 1|0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT ./. ./. 1|0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT ./. ./. 1|0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT ./. 0|1 0|1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT 1|0 ./. ./. -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT 0|1 ./. ./. -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT ./. 1|0 1|0 -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT ./. 0|1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT ./. ./. 0|1 -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT 1|0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT 1|0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT 1|0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT 1|0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT 1|0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT 0|1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT 1|0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT 1|0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT 1|0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT 1|0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT 1|0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT 1|0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT 1|0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT 1|0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT 1|0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT 1|0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT 1|0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT 1|0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT 1|0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT ./. ./. 0|1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT 1|0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT 1|0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT 1|0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT 1|0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT ./. 1|0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT 1|0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT 1|0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT 1|0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT 1|0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT 1|0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT 1|0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT 1|0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT 1|0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT 1|0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT 1|0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT ./. ./. 0|1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT 1|0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT 1|0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT 1|0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT 1|0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT 1|0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT 1|0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT 1|0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT 1|0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT 1|0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT 1|0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT 1|0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT 1|0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT 1|0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT 1|0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT 1|0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT 1|0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT 1|0 ./. ./. -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT 1|0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT 1|0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT 1|0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT 1|0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT 1|0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT 1|0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT 1|0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT 1|0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT ./. ./. 1|0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT ./. 1|1 0|1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT 1|0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT 1|0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT 1|0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT 1|0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT 1|0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT 1|0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT 1|0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT ./. ./. 0|1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT 1|0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT 1|0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT 1|0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT ./. ./. 0|1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT 1|0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT 0|1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT 0|1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT 1|1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT 1|1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT 0|1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT 1|1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT 1|1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT 1|1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT ./. ./. 1|0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT 1|1 ./. ./. -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT ./. 1|0 1|0 -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT 1|1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT 0|1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT 1|1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT 1|0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT 1|0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT 1|0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT 1|0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT ./. ./. 0|1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT 1|0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT 1|0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT 1|0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT 0|1 1|0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT 1|0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT 1|0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT 1|0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT 1|0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT 1|0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT 1|0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT 1|0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT ./. 0|1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT ./. ./. 1|1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT 1|0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT ./. ./. 1|0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT 1|0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT 1|0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT 1|0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT 1|0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT 1|0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT 1|0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT 1|0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT 1|0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT 1|0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT 1|0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT 1|0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT 1|0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT ./. ./. 0|1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT 1|0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT 1|0 ./. ./. +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT:DP:AD 1/1:35:19,16 1/1:14:7,7 0/1:27:20,7 +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;NumCollapsed=1;CollapseId=2.1 GT:DP:AD 0/1:29:9,20 ./.:33:12,21 0/1:36:12,24 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT:DP:AD 1/1:34:18,16 1/1:35:11,24 1/1:25:13,12 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;NumCollapsed=1;CollapseId=6.0 GT:DP:AD 0/1:27:19,8 1/1:27:20,7 1/1:23:7,16 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.3 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT:DP:AD ./.:30:19,11 1/0:43:20,23 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT:DP:AD ./.:15:10,5 1/0:29:9,20 ./.:30:15,15 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT:DP:AD ./.:38:18,20 0/1:34:22,12 ./.:28:13,15 +chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT:DP:AD 0/1:26:8,18 ./.:41:17,24 1/0:30:17,13 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 diff --git a/repo_utils/test_files/answer_key/multi_collapsed_first.vcf b/repo_utils/test_files/answer_key/multi_collapsed_first.vcf index 0ba9c9de..54bfb91a 100644 --- a/repo_utils/test_files/answer_key/multi_collapsed_first.vcf +++ b/repo_utils/test_files/answer_key/multi_collapsed_first.vcf @@ -36,3511 +36,3513 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT 1/1 1/1 1/0 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT ./. 1|0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT ./. 1|0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT ./. ./. 1|1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT ./. 1|0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT ./. ./. 0|1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT ./. ./. 0|1 -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT ./. 1|0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT ./. 1|0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT ./. ./. 0|1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT ./. ./. 1|0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT ./. ./. 0|1 -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT ./. 1|0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT ./. 1|0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT ./. 1|0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT ./. 1|0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT ./. 1|0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT ./. 0|1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT ./. ./. 1|0 -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT ./. 0|1 1|0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT ./. 1|0 ./. -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT ./. 1|0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT ./. 1|0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT ./. 1|0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT ./. 1|0 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT 1|1 ./. ./. -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT ./. 1|1 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT ./. ./. 1|0 -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT ./. 0|1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT 1|1 1|0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT 1|1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT ./. 1|0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT 1|1 1|1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT 1|1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT 1|1 1|0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT 1|1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT ./. 1|0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT 0|1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT ./. ./. 1|0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT 1|0 0|1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT ./. 1|1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT ./. 1|1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT ./. ./. 1|0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT 1|0 ./. ./. -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT 0|1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT ./. 1|1 1|0 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT ./. ./. 0|1 -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT 0|1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT ./. 1|1 1|0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT ./. ./. 1|0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT ./. ./. 1|0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT 1|0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT ./. 1|1 ./. -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT 1|1 ./. ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT ./. ./. 0|1 -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT 1|1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT ./. ./. 0|1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT ./. ./. 0|1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT ./. 1|1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT ./. 0|1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT 1|1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT ./. 1|0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT ./. 1|0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT ./. 1|0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT ./. ./. 0|1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT ./. 1|0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT ./. 0|1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT 0|1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT 1|1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT ./. 1|0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT ./. 1|0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT ./. 1|0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT ./. 1|0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT ./. 1|0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT ./. 1|0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT ./. 1|0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT 1|1 ./. ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT 0|1 0|1 ./. -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT ./. 1|0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT ./. 1|0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT ./. 1|0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT ./. 1|0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT 0|1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT 1|1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT ./. 1|0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT ./. ./. 0|1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT ./. 1|0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT ./. 1|0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT 1|1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT ./. 1|0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT ./. 1|0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT ./. 0|1 ./. -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT ./. 1|0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT ./. ./. 0|1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT ./. 1|0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT ./. ./. 0|1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT ./. 1|0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT ./. 1|0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT ./. 1|0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT ./. 1|0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT ./. 1|0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT ./. 1|0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT ./. 0|1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT ./. 1|0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT ./. 1|0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT ./. 1|0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT ./. 1|0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT 0|1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT ./. 1|0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT ./. 1|1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT ./. 1|0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT ./. 1|0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT ./. 1|0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT ./. ./. 1|0 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT 0|1 1|0 ./. -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT ./. ./. 1|1 -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT ./. 1|0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT ./. 1|0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT ./. 1|0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT ./. 1|0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT ./. 1|0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT ./. 1|0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT ./. 1|0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT 1|1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT ./. 1|0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT ./. 1|0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT ./. 1|1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT ./. 1|1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT ./. 1|1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT ./. 1|1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT ./. 1|1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT ./. 1|1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT ./. 1|1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT ./. 1|1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT ./. ./. 1|1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT 0|1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT ./. 1|1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT ./. ./. 1|1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT ./. ./. 1|1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT 1|1 ./. ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT ./. 1|1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;NumCollapsed=1;CollapseId=2.0 GT 0/1 ./. 0/1 -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT 1/0 ./. ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT 0/1 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT ./. ./. 0/1 -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT ./. ./. 1/0 -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT ./. ./. 0|1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT ./. ./. 1|0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT ./. 1|1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT ./. 1|1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT ./. 1|1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT ./. ./. 0|1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT 1|1 ./. ./. -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT ./. 1|1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT ./. ./. 0|1 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT 0|1 1|1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT ./. ./. 1|1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT ./. ./. 1|1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT 0|1 1|1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT ./. ./. 0|1 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT 1|0 ./. ./. -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT ./. ./. 1|0 -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT 0|1 1|1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT ./. ./. 0|1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT 0|1 1|1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT 0|1 1|1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT 1|0 ./. ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT ./. ./. 1|1 -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT 0|1 1|1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT ./. ./. 0|1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT 0|1 1|1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT 0|1 1|1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT ./. ./. 0|1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT 0|1 1|0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT ./. ./. 1|0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT 0|1 1|1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT ./. ./. 0|1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT ./. ./. 0|1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT 0|1 1|1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT ./. ./. 0|1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT 1|0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT ./. ./. 0|1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT 0|1 1|1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT ./. 0|1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT ./. ./. 0|1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT ./. ./. 0|1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT ./. ./. 0|1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT ./. ./. 0|1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT ./. ./. 0|1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT ./. ./. 0|1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT 0|1 1|1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT ./. ./. 0|1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT ./. ./. 0|1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT ./. ./. 0|1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT ./. ./. 0|1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT ./. ./. 0|1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT ./. ./. 0|1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT ./. ./. 0|1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT ./. ./. 0|1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT ./. ./. 0|1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT ./. ./. 0|1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT ./. ./. 0|1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT ./. ./. 0|1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT ./. ./. 0|1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT ./. ./. 0|1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT ./. ./. 0|1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT ./. 0|1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT 0|1 1|0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT ./. ./. 0|1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT ./. ./. 0|1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT ./. ./. 0|1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT ./. ./. 0|1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT ./. ./. 0|1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT ./. ./. 0|1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT ./. ./. 0|1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT ./. ./. 0|1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT ./. ./. 0|1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT 0|1 1|1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT ./. ./. 0|1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT ./. ./. 0|1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT ./. ./. 0|1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT ./. ./. 0|1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT ./. ./. 0|1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT ./. ./. 0|1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT ./. ./. 0|1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT ./. ./. 0|1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT ./. ./. 0|1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT ./. ./. 0|1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT ./. ./. 0|1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT 0|1 1|1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT ./. ./. 0|1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT ./. ./. 0|1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT ./. ./. 0|1 -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT ./. ./. 0|1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT 0|1 1|0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT ./. ./. 0|1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT ./. ./. 0|1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT ./. ./. 0|1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT ./. ./. 0|1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT ./. ./. 0|1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT ./. ./. 0|1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT ./. ./. 0|1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT ./. ./. 0|1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT ./. ./. 0|1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT ./. ./. 0|1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT ./. ./. 0|1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT ./. ./. 0|1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT ./. ./. 0|1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT ./. ./. 0|1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT ./. ./. 0|1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT ./. ./. 0|1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT ./. ./. 0|1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT 0|1 1|1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT ./. ./. 0|1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT ./. ./. 0|1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT 0|1 1|1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT ./. ./. 0|1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT 0|1 1|1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT ./. ./. 0|1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT ./. ./. 0|1 -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT ./. ./. 0|1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT 1|0 ./. ./. -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT ./. ./. 1|0 -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT ./. ./. 0|1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT ./. ./. 0|1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT ./. ./. 0|1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT ./. ./. 0|1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT 0|1 1|1 ./. -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT ./. ./. 1|0 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT ./. ./. 0|1 -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT ./. ./. 0|1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT ./. ./. 1|0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT ./. ./. 1|0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT ./. ./. 0|1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT 1|0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT ./. ./. 1|1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT ./. ./. 0|1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT ./. ./. 1|0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT ./. ./. 0|1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT ./. ./. 0|1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT 0|1 ./. ./. -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT ./. ./. 0|1 -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT 1|0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT ./. ./. 0|1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT 1|0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT ./. ./. 0|1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT ./. ./. 0|1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT ./. ./. 0|1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT ./. ./. 0|1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT ./. ./. 0|1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT ./. ./. 0|1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT ./. ./. 0|1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT ./. ./. 0|1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT ./. ./. 0|1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT ./. ./. 0|1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT ./. ./. 0|1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT ./. ./. 0|1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT ./. ./. 1|0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT 1|0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT 1|0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT 1|0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT 1|0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT 1|0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT 1|0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT 1|0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT 1|0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT ./. ./. 0|1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT ./. ./. 1|0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT 1|0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT ./. ./. 0|1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT ./. ./. 0|1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT ./. ./. 1|0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT ./. ./. 0|1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT ./. ./. 1|1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT 1|0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT ./. ./. 1|0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT ./. ./. 1|0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT ./. ./. 1|0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT ./. ./. 1|0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT ./. ./. 1|0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT ./. ./. 1|0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT ./. ./. 1|0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT ./. ./. 0|1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT ./. ./. 0|1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT ./. ./. 1|0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT ./. ./. 1|0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT 1|0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT ./. ./. 1|1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT ./. ./. 1|0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT ./. ./. 1|0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT ./. ./. 0|1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT 1|0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT ./. ./. 1|0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT ./. ./. 1|0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT ./. ./. 1|0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT ./. ./. 1|0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT ./. 0|1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT 1|0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT ./. ./. 1|0 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT 1|1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT ./. 1|0 1|0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT ./. 0|1 0|1 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT ./. ./. 1|0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT ./. ./. 1|0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT ./. ./. 1|0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT ./. ./. 1|0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT ./. ./. 1|0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT ./. ./. 1|0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT ./. ./. 1|0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT ./. ./. 1|0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT ./. ./. 1|0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT 1|1 1|1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT ./. ./. 1|0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT 1|0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT 1|1 1|0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT ./. ./. 1|0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT ./. ./. 1|0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT ./. ./. 1|0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT ./. ./. 1|0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT ./. ./. 1|0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT ./. ./. 1|0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT ./. ./. 1|0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT ./. ./. 0|1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT ./. ./. 1|0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT ./. ./. 1|1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT ./. ./. 1|0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT ./. ./. 1|0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT ./. ./. 1|0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT ./. ./. 1|0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT ./. ./. 1|0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT 1|1 1|0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT ./. ./. 1|0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT ./. ./. 1|0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT ./. ./. 1|1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT ./. ./. 1|1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT ./. ./. 1|1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT ./. ./. 1|1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT ./. ./. 1|1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT ./. ./. 0|1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT ./. ./. 0|1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT ./. ./. 0|1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT ./. ./. 1|1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT ./. ./. 1|1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT ./. ./. 1|0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT ./. ./. 1|1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT ./. ./. 1|1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT ./. ./. 1|1 -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT ./. ./. 1|1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT ./. ./. 1|1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT ./. ./. 1|1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT ./. ./. 1|1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT ./. ./. 1|0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT ./. ./. 0|1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT ./. ./. 1|1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT ./. ./. 1|1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT 1|1 1|0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT ./. ./. 1|1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT ./. ./. 1|1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT ./. ./. 1|1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT ./. ./. 1|1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT ./. ./. 1|1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT ./. ./. 1|1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT 1|1 1|0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT ./. ./. 1|1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT ./. ./. 1|1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT 1|0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT ./. 0|1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT 1|0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT 0|1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT ./. ./. 1|1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT ./. ./. 1|1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT ./. 0|1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT ./. 0|1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT ./. ./. 1|1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT ./. 0|1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT ./. 0|1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT ./. ./. 0|1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT ./. ./. 1|1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT ./. ./. 1|0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT ./. ./. 0|1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT 1|1 1|0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT ./. 0|1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT ./. ./. 1|1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT ./. 0|1 1|1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT ./. ./. 1|1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT ./. ./. 1|1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT ./. ./. 1|1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT ./. ./. 1|1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT ./. ./. 1|1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT ./. ./. 1|1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT ./. ./. 0|1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT ./. 0|1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT ./. ./. 1|0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT ./. 0|1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT ./. ./. 1|0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT ./. 0|1 0|1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT ./. ./. 1|0 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT ./. 0|1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT 0|1 1|0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT ./. 0|1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT ./. ./. 1|1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT ./. 0|1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT ./. 0|1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT ./. 0|1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT ./. 0|1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT ./. 0|1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT 1|0 ./. ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT ./. ./. 1|0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT ./. ./. 0|1 -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT ./. 0|1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT ./. ./. 1|0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT 1|0 0|1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT ./. ./. 1|1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT ./. 1|0 ./. -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT ./. 0|1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT ./. 0|1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT ./. 0|1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT ./. 0|1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT ./. 0|1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT ./. ./. 0|1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT ./. 0|1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT ./. 0|1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT ./. 0|1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT ./. 0|1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT ./. 0|1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT ./. 0|1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT ./. 0|1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT ./. 0|1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT ./. 0|1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT ./. 0|1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT 1|0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT ./. 0|1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT ./. 0|1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT ./. 0|1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT ./. 0|1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT ./. 0|1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT ./. 0|1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT ./. 0|1 1|1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT ./. ./. 1|1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT ./. ./. 0|1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT ./. ./. 0|1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT ./. ./. 0|1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT ./. ./. 1|1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT ./. ./. 1|1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT 0|1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT 0|1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT ./. 0|1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT ./. ./. 1|0 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT ./. 1|0 ./. -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT ./. ./. 0|1 -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT ./. ./. 1|0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT ./. ./. 1|0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT ./. ./. 1|0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT ./. ./. 1|0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT ./. ./. 1|0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT ./. ./. 1|0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT ./. ./. 0|1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT ./. ./. 1|0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT ./. ./. 0|1 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT 1|0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT 1|0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT 1|0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT ./. ./. 1|0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT ./. ./. 1|0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT ./. ./. 1|0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT ./. ./. 1|0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT ./. ./. 1|0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT 1|0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT ./. ./. 1|0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT ./. ./. 1|0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT ./. ./. 1|0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT ./. ./. 1|0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT 1|0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT 1|0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT ./. ./. 1|0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT 1|0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT ./. ./. 1|0 -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT 1|0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT 1|0 ./. ./. -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT ./. ./. 1|0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT ./. ./. 1/0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT ./. ./. 1|0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT 1|0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT 1|0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT ./. ./. 1|0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT ./. ./. 1|0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT ./. ./. 1|0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT 1/1 1/1 1/1 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT 1|0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT ./. ./. 1|0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT 1|0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT 1|0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT 1|0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT 1|0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT 1|0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT 1|0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT 1|0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT 1|0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT ./. ./. 1|0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT 1|0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT 1|0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT 1|0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT 1|0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT 1|0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT 1|0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT 1|0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT 1|0 ./. ./. -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT ./. ./. 1|0 -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT 1|0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT 1|0 ./. ./. -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT ./. ./. 1|0 -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT ./. ./. 0|1 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT 1|0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT ./. ./. 1|0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT ./. ./. 0|1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT 1|0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT ./. ./. 1|0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT ./. ./. 1|0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT 1|0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT 1|0 ./. ./. -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT ./. 0|1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT ./. ./. 0|1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT ./. 0|1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT ./. 0|1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT ./. ./. 0|1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT 0|1 1|1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT ./. ./. 0|1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT ./. 0|1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT ./. 0|1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT ./. 0|1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT ./. 0|1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT ./. 0|1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT ./. ./. 0|1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT 0|1 1|0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT ./. 0|1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT ./. 1|0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT ./. 1|1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT ./. 1|0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT ./. 1|0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT ./. 1/0 ./. -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT 0|1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT ./. 1|0 0|1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT ./. 1|0 0|1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT ./. 1|0 0|1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT 0|1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT ./. ./. 0|1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT 1|0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT 1|0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT 0|1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT ./. ./. 0|1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT 0|1 ./. ./. -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT ./. ./. 0|1 -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT 1|0 ./. ./. -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT 0|1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT ./. ./. 1|0 -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT ./. ./. 0|1 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT 1|0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT ./. 1|0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT ./. 1|0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT ./. ./. 0|1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT ./. 1|0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT 1|0 0|1 ./. -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT ./. 1|1 0|1 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT ./. 1|0 ./. -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT ./. ./. 1|0 -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT 1|0 0|1 ./. -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT 0|1 ./. ./. -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT ./. ./. 0|1 -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT ./. 1|0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT ./. ./. 1|0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT ./. ./. 1|0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT ./. ./. 0|1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT ./. 1|0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT 0|1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT 0|1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT 0|1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT 1|0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT 0|1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT 0|1 1|0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT 1|0 ./. ./. -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT 0|1 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT ./. 0|1 ./. -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT ./. ./. 1|0 -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT ./. ./. 0|1 -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT ./. 1|0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT 0|1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT 0|1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT 0|1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT 0|1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT 0|1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT 0|1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT 0|1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT ./. ./. 1|0 -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT 0|1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT 0|1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT ./. ./. 1|0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT 0|1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT 0|1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT ./. 0|1 0|1 -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT ./. ./. 1|0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT 1|0 1|1 ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT ./. ./. 1|0 -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT 0|1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT 0|1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT 0|1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT 0|1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT ./. 1|0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT 1|0 1|0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT 0|1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT ./. 1|0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT 0|1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT 0|1 1|0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT ./. ./. 1|0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT ./. 1|0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT ./. 1|0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT ./. 1|0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT ./. 1|0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT ./. 1|0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT ./. 1|0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT ./. 1|0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT ./. 1|0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT ./. 1|0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT ./. 1|0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT ./. 1|0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT 0|1 1|1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT 1|0 0|1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT 1|0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT ./. 0|1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT 1|0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT ./. 0|1 1|0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT ./. 0|1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT ./. 1|0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT 0|1 1|0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT ./. 1|0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT ./. ./. 1|0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT ./. 1|0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT ./. ./. 1|0 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT ./. 1|0 ./. -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT ./. ./. 1|1 -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT ./. 1|0 1|0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT 1|0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT 1|0 0|1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT 1|0 1|1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT 1|0 0|1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT ./. 1|0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT ./. 1|0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT ./. 1|0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT ./. 1|0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT ./. 1|0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT 1|0 1|1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT 1|0 0|1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT ./. 1|0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT ./. 0|1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT ./. 0|1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT ./. 1|0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT ./. 1|0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT 1|0 ./. ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT ./. 0|1 ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT ./. 1|0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT ./. 1|0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT 0|1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT ./. 1|0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT 1|1 1|1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT ./. ./. 0|1 -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT ./. 1|1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT ./. 1|1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT ./. 1|1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT ./. 1|1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT 0|1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT ./. 0|1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT ./. 1|1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT ./. 1|1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT ./. 1|0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT ./. 1|1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT ./. 1|0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT ./. 1|1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT ./. 0|1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT ./. 1|1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT ./. 1|1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT ./. 1|1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT ./. 1|1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT ./. 1|1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT ./. 1|1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT ./. 1|1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT ./. 0|1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT ./. 1|1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT ./. 1|1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT ./. 1|1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT ./. 1|1 1|0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT ./. 1|1 1|0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT ./. 1|1 1|0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT ./. 1|1 1|0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT 1|0 1|1 ./. -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT ./. ./. 1|0 -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT ./. ./. 1/0 -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT ./. 1|0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT 1|0 ./. ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;NumCollapsed=1;CollapseId=6.0 GT 1/0 1/1 1/1 -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT ./. ./. 1|0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT ./. ./. 1|0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT ./. 1|0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT ./. ./. 1|0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT ./. ./. 0|1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT ./. ./. 1|0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT ./. ./. 1|0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT ./. ./. 0|1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT ./. ./. 1|0 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT ./. 0|1 1|0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT ./. ./. 0|1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT ./. 0|1 1|0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT ./. 0|1 ./. -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT ./. ./. 1|0 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT 0|1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT ./. ./. 1|0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT ./. 1|0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT ./. ./. 0|1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT ./. ./. 1|0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT ./. 1|0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT ./. 1|1 1|1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT 1|0 1|1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT ./. ./. 1|0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT 0|1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT ./. ./. 0|1 -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT ./. 1|0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT 1|0 1|0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT ./. 0|1 1|0 -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT ./. ./. 0|1 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT 1|0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT ./. 1|0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT 1|0 1|0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT 1|0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT ./. 0|1 1|0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT 0|1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT 0|1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT 0|1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT 1|0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT 1|0 1|0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT ./. ./. 1|0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT ./. 0|1 1|0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT ./. ./. 1|1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT 1/1 1/0 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT 1|0 1|0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT 1|0 1|0 1|0 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT ./. 1|0 1|0 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT 0|1 ./. ./. -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT ./. ./. 1|1 -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT ./. 0|1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT ./. 1|0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT ./. ./. 1|1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT 1|1 1|0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT 1|1 1|0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT 1|1 1|0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT 1|0 1|0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT 1|1 1|0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT ./. ./. 1|1 -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT ./. ./. 0|1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT 1|0 ./. ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT ./. 1|0 1|0 -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT ./. ./. 1|0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT ./. 0|1 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT ./. ./. 1|0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT 1|0 1|0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT ./. ./. 0|1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT ./. ./. 1|0 -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT ./. ./. 0|1 -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT ./. ./. 1|1 -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT 1|0 ./. ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT 0|1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT ./. 1|0 ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT 0|1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT 1|0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT 1|0 ./. ./. -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT 0|1 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT ./. 0|1 1|1 -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT ./. ./. 0|1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT 0|1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT 1|0 1|0 ./. -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT ./. 0|1 1|0 -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT ./. ./. 0|1 -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT ./. ./. 0|1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT ./. 0|1 1|1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT 0|1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT 0|1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT 1|0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT 0|1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT ./. 0|1 ./. -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT ./. 1|0 1|1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT 0|1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT ./. ./. 1|0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT ./. 1|0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT 1|0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT ./. ./. 1|0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT 1/0 ./. ./. -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT 0|1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT ./. 1|0 ./. -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT ./. 0|1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT ./. 0|1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT ./. 0|1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT 0|1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT 0|1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT ./. 0|1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT ./. ./. 1|1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT ./. 1|0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT ./. 1|0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT ./. 1|0 1|1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT ./. 1|0 ./. -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT 0|1 ./. ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT ./. ./. 1|1 -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT ./. 0|1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT ./. ./. 0|1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT ./. ./. 1|0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT 1|0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT 0|1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT ./. 1|0 1|0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT ./. 0|1 ./. -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT 1|0 ./. ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT ./. ./. 1|0 -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT ./. ./. 1|0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT ./. 1|0 1|0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT ./. ./. 1|0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT ./. 1|0 1|1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT ./. ./. 0|1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT 0|1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT ./. 1|0 1|1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT ./. 1|0 1|1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT ./. 1|0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT ./. 1|0 1|1 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT 0|1 ./. ./. -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT ./. ./. 0|1 -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT ./. 1|0 1|1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT ./. 1|0 0|1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT ./. 0|1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT ./. 1|1 1|1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT ./. 1|0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT 0|1 0|1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT 1|0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT 1|0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT ./. ./. 0|1 -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT 1|0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT 1|0 ./. ./. -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT ./. 1|0 ./. -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT ./. ./. 1|0 -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT ./. ./. 0|1 -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT 1|0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT ./. 0|1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT 1|0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT 1|0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT 1|0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT ./. 1|0 1|1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT 1|0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT 1|0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT 1|0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT 1|0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT ./. 0|1 ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT 1|0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT 1|0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT 1|0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT 1|0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT 1|0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT 1|0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT 1|0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT ./. ./. 0|1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT 1|0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT 1|0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT 1|0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT ./. 1|0 1|1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT 1|0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT ./. ./. 0|1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT 1|0 ./. ./. -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT 1|0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT 1|0 0|1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT 1|0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT ./. 1|0 0|1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT ./. ./. 1|0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT 1|0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT 1|0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT 1|0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT 1|0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT 1|0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT 1|0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT ./. 1|0 1|1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT ./. 1|0 1|1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT ./. 1|0 1|1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT ./. 1|0 1|1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT ./. 1|0 1|1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT ./. 1|0 1|1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT ./. 1|0 1|1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT ./. 1|0 1|1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT 1|0 ./. ./. -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT 0|1 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT ./. 1|0 1|1 -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT ./. 1|0 1|1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT ./. 1|0 1|1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT 1|0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT 0|1 1|0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT ./. ./. 1|0 -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT ./. ./. 0|1 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT ./. 0|1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT ./. 0|1 1|1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT ./. 0|1 0|1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT 0|1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT 1|0 1|0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT 1|1 1|0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT 0|1 1|0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT 1|1 1|0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT ./. 0|1 1|1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT ./. 0|1 1|1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT ./. 1|0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT 1|1 1|0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT ./. 1|1 1|1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT 1|1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT ./. ./. 1|0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT ./. ./. 0|1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT ./. 1|1 1|1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT ./. 1|1 1|0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT ./. 1|1 1|1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT 1|0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT 1|1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT ./. ./. 1|0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT 1|1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT 1|1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT 1|0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT 0|1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT 0|1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT ./. ./. 1|0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT 0|1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT 1|0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT 0|1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT 0|1 1|0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT ./. 1|1 1|1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT 0|1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT ./. 1|1 1|1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT ./. 1|1 1|1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT ./. 1|1 0|1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT ./. ./. 1|0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT ./. 1|1 1|1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT 0|1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT ./. 1|1 1|1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT ./. 1|0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT 1|0 ./. ./. -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT 1|0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT ./. 1|0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT ./. 1|0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT ./. 1|1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT ./. 0|1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT ./. 1|1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT ./. 1|1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT ./. 1|1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT 1|0 1|1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT 1|0 1|0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT 0|1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT 1|1 1|1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT 1|0 ./. ./. -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT ./. 1|1 ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT 1|0 1|1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT ./. 1|1 1|0 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT 1|0 1|1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT ./. 1|1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT 1|0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT ./. 1|1 ./. -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT ./. ./. 0|1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT 0|1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT ./. 1|0 ./. -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT ./. ./. 1|0 -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT 0|1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT ./. ./. 0|1 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT 1|0 0|1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT ./. 1|0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT 1|0 1|1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT 0|1 ./. ./. -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT ./. ./. 0|1 -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT 0|1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT ./. ./. 1|0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT ./. ./. 1|0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT ./. 0|1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT ./. 0|1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT ./. ./. 1|0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT ./. ./. 1|0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT 1|0 1|1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT ./. 1|0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT ./. ./. 1|0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT ./. ./. 1|1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT 1|0 1|1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT ./. ./. 1|1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT 0|1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT 0|1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT ./. 0|1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT 0|1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT ./. 1|0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT ./. 0|1 ./. -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT 1/0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT ./. ./. 0/1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT 0/1 ./. ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.4 GT ./. 0/1 ./. -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT ./. ./. 1/0 -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT 1/0 ./. ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT ./. ./. 0/1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT ./. ./. 1/0 -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT 0|1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT 1|0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT ./. 0|1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT ./. 0|1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT 0|1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT 0|1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT ./. ./. 1|1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT 0|1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT 0|1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT 0|1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT 0|1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT 0|1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT 0|1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT 0|1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT 0|1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT 0|1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT 0|1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT 0|1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT 0|1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT 0|1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT 0|1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT 0|1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT 0|1 1|1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT 0|1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT ./. 1|0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT ./. ./. 0|1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT 1|0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT ./. ./. 0|1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT 1|0 ./. ./. -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT 1|0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT 1|0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT 1|0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT 1|0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT 1|0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT ./. 1|0 0|1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT 1|0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT 1|0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT ./. 1|0 0|1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT 1|0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT ./. 1|0 0|1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT 1|0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT ./. 1|0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT ./. ./. 1|1 -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT 1|0 1|0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT 1|0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT ./. 1|0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT ./. 1|0 0|1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT ./. ./. 0|1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT 1|0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT ./. ./. 0|1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT ./. ./. 1|0 -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT ./. ./. 0|1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT 1|0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT ./. ./. 0|1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT ./. 1|0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT 1|0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT 1|0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT 1|0 ./. ./. -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT 1|0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT ./. ./. 0|1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT 1|0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT 1|0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT ./. ./. 0|1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT ./. ./. 1|1 -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT 1|0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT ./. ./. 1|0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT 1|1 0|1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT 1|0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT ./. 0|1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT ./. 1|0 ./. -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT ./. 1|1 ./. -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT 1|0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT ./. ./. 0|1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT ./. 0|1 ./. -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT ./. ./. 0|1 -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT 1|0 ./. ./. -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT 0/1 1/0 1/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT 1/0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT 1|0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT ./. ./. 0|1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT 1|0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT ./. ./. 0|1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT ./. ./. 0|1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT 1|0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT ./. ./. 0|1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT ./. ./. 0|1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT 1|0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT 1|0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT 1|0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT 0|1 ./. ./. -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT ./. 1|0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT ./. ./. 1|1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT 0|1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT ./. ./. 0|1 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT 0|1 ./. ./. -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT 1|0 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT ./. ./. 1|0 -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT 0|1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT ./. ./. 0|1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT ./. ./. 0|1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT 0|1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT 0|1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT 0|1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT ./. 1|0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT 1|0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT ./. ./. 0|1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT 1|1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT 1|0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT ./. ./. 0|1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT ./. ./. 0|1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT ./. 1|0 0|1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT 1|1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT 0|1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT 0|1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT 1|0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT ./. 1|0 1|0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT 0|1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT 0|1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT 1|0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT ./. 1|0 1|0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT ./. 0|1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT 1|0 0|1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT ./. ./. 1|0 -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT 1|0 ./. ./. -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT ./. 0|1 ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT 1|1 0|1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT 0|1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT ./. ./. 0|1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT ./. ./. 1|0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT ./. 0|1 0|1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT ./. ./. 1|0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT ./. 0|1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT ./. ./. 0|1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT 1|0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT 1|0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT 1|0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT 1|0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT ./. ./. 1|0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT 0|1 1|1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT ./. ./. 0|1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT ./. 1|1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT ./. ./. 1|1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT ./. ./. 1|1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT 0|1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT ./. 0|1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT 0|1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT ./. ./. 1|1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT ./. ./. 1|1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT ./. ./. 1|1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT 1|0 ./. ./. -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT ./. ./. 1|1 -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT ./. ./. 1|1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT ./. ./. 1|1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT 0|1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT ./. ./. 1|1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT ./. ./. 1|1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT ./. ./. 1|1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT ./. ./. 1|1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT ./. ./. 1|1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT ./. ./. 1|1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT ./. ./. 1|1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT ./. ./. 1|1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT ./. ./. 1|1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT 0|1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT ./. ./. 1|1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT ./. ./. 0|1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT ./. ./. 1|1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT ./. ./. 1|1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT ./. ./. 1|1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT ./. ./. 1|1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT ./. ./. 1|1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT ./. ./. 1|1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT ./. ./. 1|1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT ./. ./. 1|1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT ./. ./. 1|1 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT 0|1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT ./. ./. 1|1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT ./. ./. 1|1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT 1|0 1|0 ./. -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT 0|1 0|1 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT ./. ./. 1|1 -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT ./. 1|0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT 0|1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT 0|1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT ./. ./. 0|1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT ./. ./. 0|1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT ./. 0|1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT 1|0 1|1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT ./. ./. 0|1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT 1|0 1|1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT ./. ./. 0|1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT 0|1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT ./. 1|0 0|1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT ./. 1|0 0|1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT ./. 0|1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT ./. 1|0 0|1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT ./. 1|0 0|1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT 1|0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT ./. 0|1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT ./. 1|0 0|1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT ./. 1|0 0|1 -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT 1|0 ./. ./. -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT 0|1 ./. ./. -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT ./. ./. 1|0 -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT ./. 1|0 0|1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT 0|1 ./. ./. -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT ./. 1|0 0|1 -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT ./. 1|0 0|1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT ./. 1|0 0|1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT ./. 1|0 0|1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT ./. 1|0 0|1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT 1|0 0|1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT ./. 1|0 0|1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT 0|1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT 1|0 1|1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT ./. ./. 0|1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT ./. 0|1 ./. -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT 1|0 1|0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT ./. ./. 0|1 -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT ./. 0|1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT ./. ./. 0|1 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT ./. 1/0 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT 1/1 0/1 ./. -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT ./. ./. 0|1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT ./. ./. 0|1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT 0|1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT ./. ./. 0|1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT 1|1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT ./. 1|0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT 1|0 ./. ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT ./. 1|0 ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT ./. 1|0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT ./. 1|0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT 1|1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT ./. 1|0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT ./. 1|0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT 1|1 1|0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT ./. ./. 0|1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT ./. 1|0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT ./. 1|0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT ./. 1|0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT ./. 0|1 1|0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT ./. ./. 0|1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT ./. ./. 1|0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT ./. 0|1 1|0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT ./. 0|1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT ./. 0|1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT ./. 1|0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT ./. 1|1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT ./. 0|1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT ./. 0|1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT ./. 1|0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT ./. 0|1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT ./. 1|1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT ./. 1|1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT ./. 1|1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT ./. 1|0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT ./. 1|1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT ./. 1|1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT ./. 1|1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT ./. 1|1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT ./. 1|1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT ./. 0|1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT ./. 1|1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT ./. 0|1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT ./. 1|1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT ./. 1|1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT ./. 1|1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT ./. 0|1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT ./. 0|1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT ./. 1|0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT ./. 0|1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT ./. 0|1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT ./. 1|0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT ./. 0|1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT 0|1 1|0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT ./. 0|1 ./. -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT ./. 0|1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT ./. 0|1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT ./. ./. 1|0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT 1|0 ./. ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT ./. 1/0 ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT ./. 0/1 ./. -chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT 0/1 ./. 1/0 -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT ./. ./. 1|0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT ./. ./. 1|0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT 0|1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT 0|1 1|1 ./. -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT 0|1 1|0 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT ./. ./. 1|0 -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT 1|0 1|0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT ./. ./. 1|0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT ./. 0|1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT ./. ./. 0|1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT 1|0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT 1|0 ./. ./. -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT ./. ./. 1|0 -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT 1|0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT ./. ./. 1|0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT 1|0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT 1|0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT 0|1 ./. ./. -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT ./. 0|1 ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT ./. ./. 1|0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT ./. ./. 1|0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT ./. ./. 1|0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT ./. 0|1 ./. -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT 1|0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT ./. 0|1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT ./. ./. 1|0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT 1|0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT ./. 0|1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT ./. ./. 1|0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT 1|0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT ./. ./. 1|0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT 1|0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT ./. ./. 1|0 -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT 0|1 ./. ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT ./. 1|0 ./. -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT ./. 0|1 ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT 1|0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT 1|0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT 0|1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT ./. ./. 1|0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT ./. ./. 0|1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT 1|0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT ./. ./. 1|0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT ./. 0|1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT 1|0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT ./. ./. 1|0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT 1|0 ./. ./. -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT ./. ./. 1|0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT ./. ./. 1|0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT 1|0 0|1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT ./. 0|1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT ./. ./. 1|0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT ./. 1|0 1|1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT ./. ./. 1|0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT ./. 0|1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT 0/1 1/0 0/1 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT 1|0 0|1 ./. -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT ./. ./. 1|0 -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT ./. ./. 1|0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT ./. 1|0 ./. -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT ./. ./. 1|0 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 0/1 ./. ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT 1|0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT ./. ./. 1|0 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT ./. ./. 1|0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT ./. ./. 1|0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT ./. ./. 1|0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT 1|0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT ./. ./. 1|0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT ./. 1|0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT 1|0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT 1|0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT ./. ./. 1|0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT 1|0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT ./. 0|1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT 1|0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT ./. ./. 1|0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT 1|0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT ./. ./. 1|0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT ./. ./. 1|0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT ./. ./. 1|0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT ./. ./. 1|0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT 1|0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT 1|0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT ./. ./. 1|0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT ./. ./. 1|0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT ./. ./. 1|0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT ./. 0|1 ./. -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT 1|0 ./. ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT ./. ./. 1|0 -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT ./. ./. 1|0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT ./. 1|0 1|0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT ./. 1|1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT ./. 1|0 1|1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT ./. ./. 1|0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT ./. 1|0 1|0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT ./. 1|0 1|0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT ./. 1|0 1|0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT ./. 1|0 1|0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT ./. 1|0 1|0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT 1|1 0|1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT 1|1 0|1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT ./. ./. 0|1 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT 0/1 ./. 1/0 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT ./. 1|0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT 1|1 0|1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT ./. 1|0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT ./. 1|0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT ./. ./. 0|1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT 1|1 0|1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT ./. 1|0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT ./. 1|0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT ./. ./. 1|0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT ./. 1|0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT 1|1 0|1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT ./. ./. 1|0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT 1|1 0|1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT ./. 0|1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT ./. ./. 1|0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT 1|1 0|1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT 1|1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT ./. ./. 1|0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT 1|1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT ./. 1|0 ./. -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT ./. 0|1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT ./. ./. 1|0 -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT ./. 1|1 1|0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT ./. 1|1 ./. -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT ./. ./. 1|0 -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT ./. ./. 0|1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT 1|0 1|1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT ./. ./. 1|0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT 1|1 0|1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT ./. ./. 0|1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT ./. ./. 0|1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT ./. 0|1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT 0|1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT ./. 0|1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT ./. 0|1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT ./. 1|0 1|1 -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT ./. 0|1 ./. -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT ./. 1|0 1|1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT ./. 1|1 1|1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT ./. 1|1 1|1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT ./. 1|1 1|1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT ./. 0|1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT 1|0 0|1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT 0|1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT 1|1 0|1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT ./. 0|1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT ./. 0|1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT 1|1 ./. ./. -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT ./. 0|1 ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT ./. ./. 0|1 -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT ./. 1|0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT ./. ./. 0|1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT ./. 1|1 1|1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT ./. 1|1 1|1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT ./. 1|0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT ./. 0|1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT 1|1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT 1|0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT ./. 1|0 1|1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT ./. 1|0 1|1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT ./. 0|1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT 1|1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT ./. 1|0 1|1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT ./. 0|1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT 1|1 0|1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT ./. 1|0 1|1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT ./. ./. 1|0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT ./. ./. 0|1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT ./. 1|0 1|1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT ./. 1|0 1|1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT ./. 1|0 1|1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT ./. 0|1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT 1|1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT ./. 1|0 1|1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT ./. 1|0 1|1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT ./. 1|0 1|1 -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT ./. 0|1 ./. -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT ./. 1|0 1|1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT ./. 1|0 1|1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT ./. 1|0 1|1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT 1|1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT ./. 0|1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT ./. 1|1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT ./. ./. 1|0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT 0|1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT ./. 1|0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT 0|1 ./. ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT ./. 1|0 1|1 -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT ./. 0|1 ./. -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT ./. 0|1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT ./. 1|0 1|1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT ./. 1|0 0|1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT ./. 1|0 1|1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT ./. 1|0 1|1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT ./. ./. 1|0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT ./. 1|0 1|1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT ./. ./. 1|0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT ./. ./. 1|0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT 0|1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT ./. 1|0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT ./. ./. 0|1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT ./. 1|0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT ./. ./. 0|1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT 0|1 1|1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT 0|1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT ./. 0|1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT 1|0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT 1|0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT 1|1 0|1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT 0|1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT 1|0 ./. ./. -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT 0|1 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT ./. 1|0 1|1 -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT ./. 1|0 1|1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT ./. 1|0 1|1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT 1|0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT 1|0 ./. ./. -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT 0/1 1/0 1/1 -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT 1|0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT 1|0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT 1|0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT ./. 1|0 1|1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT 1|0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT 1|0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT 1|0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT 1|0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT 1|0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT 1|0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT 1|0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT 1|0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT 1|0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT 1|0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT 1|0 ./. ./. -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT ./. 1|0 0|1 -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT ./. ./. 1|0 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT 1|0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT 1|0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT 1|0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT 1|1 1|0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT ./. 0|1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT 0|1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT ./. 1|1 1|1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT ./. 1|1 1|1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT 1|0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT ./. 1|1 1|1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT ./. 1|1 1|1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT ./. 1|1 1|1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT ./. 1|1 1|1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT ./. 1|1 1|1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT ./. 1|1 1|1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT 1|1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT 1|0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT ./. 1|1 1|1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT ./. 1|1 1|1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT ./. 1|1 1|1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT ./. 1|1 1|1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT ./. 1|1 1|1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT ./. ./. 0|1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT ./. 1|1 1|1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT ./. ./. 0|1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT ./. 1|1 1|1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT ./. ./. 0|1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT ./. 1|1 1|1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT ./. ./. 1|0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT ./. 1|1 1|1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT ./. 1|1 1|1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT ./. 1|1 1|1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT ./. ./. 0|1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT ./. 1|1 1|1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT ./. 1|1 1|1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT ./. ./. 0|1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT ./. 1|1 1|1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT ./. ./. 0|1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT ./. 1|1 1|0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT ./. ./. 0|1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT ./. 1|1 1|1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT ./. 1|1 1|1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT 1|1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT ./. 1|0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT 1|1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT 1|1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT 1|1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT 1|1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT 1|1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT ./. 1|1 1|1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT ./. ./. 0|1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT 1|1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT 1|1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT ./. 1|1 1|1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT ./. 1|1 0|1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT ./. ./. 0|1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT ./. ./. 0|1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT ./. 1|1 0|1 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT ./. 1|1 0|1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT ./. 1|1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT ./. ./. 0|1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT 0|1 ./. ./. -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT ./. ./. 0|1 -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT ./. ./. 0|1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT ./. 1|0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT 0|1 0|1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT ./. 1|0 0|1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT ./. 1|1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT ./. 1|1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT 1|0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT ./. ./. 0|1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT ./. ./. 0|1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT ./. ./. 0|1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT ./. ./. 0|1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT ./. ./. 1|0 -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT 1|0 ./. ./. -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT 0|1 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT ./. ./. 0|1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT ./. ./. 0|1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT ./. 1|1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT ./. ./. 0|1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT ./. 1|1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT 0|1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT ./. 0|1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT 0|1 ./. ./. -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT ./. 1|1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT ./. ./. 0|1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT ./. 1|1 0|1 -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT ./. 1|1 ./. -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT ./. ./. 0|1 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT ./. ./. 0|1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT ./. 1|1 0|1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT ./. ./. 0|1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT ./. 1|1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT ./. ./. 1|0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT ./. 1|1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT ./. ./. 0|1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT ./. 1|1 0|1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT ./. ./. 0|1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT ./. 1|1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT ./. 1|1 0|1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT 1|0 ./. ./. -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT ./. 1|1 0|1 -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT ./. 1|1 0|1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT ./. 1|1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT ./. 1|1 0|1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT ./. 0|1 1|1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT ./. 1|1 0|1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT ./. 1|1 0|1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT ./. ./. 0|1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT ./. 1|1 0|1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT ./. 1|0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT ./. 1|0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT ./. ./. 1|0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT ./. 1|1 0|1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT ./. ./. 0|1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT 1|1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT ./. ./. 1|0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT ./. ./. 0|1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT ./. 1|1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT ./. 1|1 0|1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT ./. ./. 0|1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT ./. ./. 0|1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT ./. 0|1 0|1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT ./. ./. 0|1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT ./. ./. 0|1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT ./. ./. 0|1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT ./. ./. 0|1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT 1|0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT 1|0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT ./. ./. 0|1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT ./. 0|1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT ./. ./. 0|1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT ./. 0|1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT ./. 1|0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT ./. 0|1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT ./. 0|1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT ./. 0|1 ./. -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT ./. ./. 0|1 -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT 0|1 ./. ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT ./. 1|0 1|0 -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT ./. 0|1 ./. -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT ./. 0|1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT ./. 0|1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT ./. 0|1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT ./. 1|0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT ./. 0|1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT ./. 0|1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT ./. 0|1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT 1|0 1|1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT 0|1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT 1|0 0|1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT ./. 0|1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT ./. ./. 0|1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT ./. 0|1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT 1|0 0|1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT ./. ./. 0|1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT ./. 1|0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT ./. ./. 0|1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT ./. 0|1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT 0|1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT ./. 1|0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT 1|0 0|1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT ./. ./. 0|1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT ./. ./. 1|0 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT ./. ./. 0|1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT ./. ./. 0|1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT ./. 1|0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT ./. ./. 0|1 -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT 1|0 ./. ./. -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT ./. 1|0 ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT ./. ./. 0|1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT ./. ./. 0|1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT ./. ./. 0|1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT ./. ./. 0|1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT ./. ./. 0|1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT ./. ./. 0|1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT ./. ./. 0|1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT ./. 1|0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT ./. ./. 0|1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT ./. ./. 0|1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT ./. ./. 0|1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT ./. ./. 0|1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT ./. ./. 0|1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT ./. ./. 0|1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT 0|1 1|0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT ./. ./. 0|1 -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT ./. ./. 0|1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT 1|0 0|1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT ./. ./. 1|0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT 1|0 0|1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT 1|0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT 1|0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT 1|0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT ./. ./. 0|1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT 1|0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT 1|0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT 1|0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT ./. 1|0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT 1|0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT 1|0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT 1|0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT ./. 1|0 ./. -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT 1|0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT 1|0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT 1|0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT 1|0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT 1|0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT ./. 1|0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT ./. 1|0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT ./. 1|0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT 1|1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT ./. 1|0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT 0|1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT 0|1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT 0|1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT 0|1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT 0|1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT 0|1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT 0|1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT 0|1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT 0|1 0|1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT 0|1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT 0|1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT 0|1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT 0|1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT 0|1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT 0|1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT 0|1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT 0|1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT 0|1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT 0|1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT 0|1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT 0|1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT 0|1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT 0|1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT 0|1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT ./. ./. 0|1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT ./. 0|1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT ./. ./. 0|1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT 1|0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT ./. ./. 0|1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT ./. 0|1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT 1|0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT 1|0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT 1|0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT 1|0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT 1|0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT 1|0 1|0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT ./. 1|0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT 1|0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT 0|1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT ./. 0|1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT ./. 0|1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT ./. 0|1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT 0|1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT ./. 0|1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT ./. 0|1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT ./. 0|1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT ./. ./. 0|1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT ./. 0|1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT ./. 1|0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT ./. 1|0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT 1|0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT 0|1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT ./. 0|1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT ./. 0|1 0|1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT ./. 0|1 0|1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT ./. ./. 0|1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT ./. ./. 0|1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT ./. 0|1 0|1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT 0|1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT ./. 0|1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT ./. 0|1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT ./. 1|0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT ./. 0|1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT ./. 1|1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT ./. 1|1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT ./. 1|1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT ./. 1|1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT ./. 1|1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT ./. 1|1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT ./. 1|1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT ./. 1|1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT ./. 1|1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT ./. 1|1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT ./. 1|1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT ./. 1|1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT ./. 1|1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT ./. 1|1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT 0|1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT ./. 1|1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT ./. 1|1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT ./. ./. 0|1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT ./. 1|0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT ./. 1|0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT ./. 1|0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT ./. 1|0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT ./. 1|0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT ./. 1|0 ./. -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT ./. 1|1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT ./. 1|1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT ./. 0|1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT ./. 1|1 0|1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT 0|1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT 0|1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT ./. 1|1 0|1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT ./. 1|1 0|1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT 0|1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT ./. 1|1 0|1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT 0|1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT ./. ./. 1|0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT ./. ./. 1|0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT ./. ./. 1|0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT ./. 0|1 0|1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT 1|0 ./. ./. -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT 0|1 ./. ./. -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT ./. 1|0 1|0 -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT ./. 0|1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT ./. ./. 0|1 -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT 1|0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT 1|0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT 1|0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT 1|0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT 1|0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT 0|1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT 1|0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT 1|0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT 1|0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT 1|0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT 1|0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT 1|0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT 1|0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT 1|0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT 1|0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT 1|0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT 1|0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT 1|0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT 1|0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT ./. ./. 0|1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT 1|0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT 1|0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT 1|0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT 1|0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT ./. 1|0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT 1|0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT 1|0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT 1|0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT 1|0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT 1|0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT 1|0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT 1|0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT 1|0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT 1|0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT 1|0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT ./. ./. 0|1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT 1|0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT 1|0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT 1|0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT 1|0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT 1|0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT 1|0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT 1|0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT 1|0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT 1|0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT 1|0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT 1|0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT 1|0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT 1|0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT 1|0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT 1|0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT 1|0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT 1|0 ./. ./. -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT 1|0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT 1|0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT 1|0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT 1|0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT 1|0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT 1|0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT 1|0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT 1|0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT ./. ./. 1|0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT ./. 1|1 0|1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT 1|0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT 1|0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT 1|0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT 1|0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT 1|0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT 1|0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT 1|0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT ./. ./. 0|1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT 1|0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT 1|0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT 1|0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT ./. ./. 0|1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT 1|0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT 0|1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT 0|1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT 1|1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT 1|1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT 0|1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT 1|1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT 1|1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT 1|1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT ./. ./. 1|0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT 1|1 ./. ./. -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT ./. 1|0 1|0 -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT 1|1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT 0|1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT 1|1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT 1|0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT 1|0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT 1|0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT 1|0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT ./. ./. 0|1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT 1|0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT 1|0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT 1|0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT 0|1 1|0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT 1|0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT 1|0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT 1|0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT 1|0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT 1|0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT 1|0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT 1|0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT ./. 0|1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT ./. ./. 1|1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT 1|0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT ./. ./. 1|0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT 1|0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT 1|0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT 1|0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT 1|0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT 1|0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT 1|0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT 1|0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT 1|0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT 1|0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT 1|0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT 1|0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT 1|0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT ./. ./. 0|1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT 1|0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT 1|0 ./. ./. +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT:DP:AD 1/1:35:19,16 1/1:14:7,7 1/0:17:8,9 +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;NumCollapsed=1;CollapseId=2.0 GT:DP:AD 0/1:29:9,20 ./.:33:12,21 0/1:36:12,24 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT:DP:AD 1/1:34:18,16 1/1:35:11,24 1/1:25:13,12 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;NumCollapsed=1;CollapseId=6.0 GT:DP:AD 0/1:27:19,8 1/1:27:20,7 1/1:23:7,16 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.3 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT:DP:AD ./.:30:19,11 1/0:43:20,23 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT:DP:AD ./.:15:10,5 1/0:29:9,20 ./.:30:15,15 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT:DP:AD ./.:38:18,20 0/1:34:22,12 ./.:28:13,15 +chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT:DP:AD 0/1:26:8,18 ./.:41:17,24 1/0:30:17,13 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 diff --git a/repo_utils/test_files/answer_key/multi_collapsed_maxqual.vcf b/repo_utils/test_files/answer_key/multi_collapsed_maxqual.vcf index 0ba9c9de..54bfb91a 100644 --- a/repo_utils/test_files/answer_key/multi_collapsed_maxqual.vcf +++ b/repo_utils/test_files/answer_key/multi_collapsed_maxqual.vcf @@ -36,3511 +36,3513 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT 1/1 1/1 1/0 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT ./. 1|0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT ./. 1|0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT ./. ./. 1|1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT ./. 1|0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT ./. ./. 0|1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT ./. ./. 0|1 -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT ./. 1|0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT ./. 1|0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT ./. ./. 0|1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT ./. ./. 1|0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT ./. ./. 0|1 -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT ./. 1|0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT ./. 1|0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT ./. 1|0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT ./. 1|0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT ./. 1|0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT ./. 0|1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT ./. ./. 1|0 -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT ./. 0|1 1|0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT ./. 1|0 ./. -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT ./. 1|0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT ./. 1|0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT ./. 1|0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT ./. 1|0 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT 1|1 ./. ./. -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT ./. 1|1 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT ./. ./. 1|0 -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT ./. 0|1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT 1|1 1|0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT 1|1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT ./. 1|0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT 1|1 1|1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT 1|1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT 1|1 1|0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT 1|1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT ./. 1|0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT 0|1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT ./. ./. 1|0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT 1|0 0|1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT ./. 1|1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT ./. 1|1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT ./. ./. 1|0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT 1|0 ./. ./. -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT 0|1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT ./. 1|1 1|0 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT ./. ./. 0|1 -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT 0|1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT ./. 1|1 1|0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT ./. ./. 1|0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT ./. ./. 1|0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT 1|0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT ./. 1|1 ./. -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT 1|1 ./. ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT ./. ./. 0|1 -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT 1|1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT ./. ./. 0|1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT ./. ./. 0|1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT ./. 1|1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT ./. 0|1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT 1|1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT ./. 1|0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT ./. 1|0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT ./. 1|0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT ./. ./. 0|1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT ./. 1|0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT ./. 0|1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT 0|1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT 1|1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT ./. 1|0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT ./. 1|0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT ./. 1|0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT ./. 1|0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT ./. 1|0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT ./. 1|0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT ./. 1|0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT 1|1 ./. ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT 0|1 0|1 ./. -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT ./. 1|0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT ./. 1|0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT ./. 1|0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT ./. 1|0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT 0|1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT 1|1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT ./. 1|0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT ./. ./. 0|1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT ./. 1|0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT ./. 1|0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT 1|1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT ./. 1|0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT ./. 1|0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT ./. 0|1 ./. -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT ./. 1|0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT ./. ./. 0|1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT ./. 1|0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT ./. ./. 0|1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT ./. 1|0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT ./. 1|0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT ./. 1|0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT ./. 1|0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT ./. 1|0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT ./. 1|0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT ./. 0|1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT ./. 1|0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT ./. 1|0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT ./. 1|0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT ./. 1|0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT 0|1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT ./. 1|0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT ./. 1|1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT ./. 1|0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT ./. 1|0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT ./. 1|0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT ./. ./. 1|0 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT 0|1 1|0 ./. -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT ./. ./. 1|1 -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT ./. 1|0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT ./. 1|0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT ./. 1|0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT ./. 1|0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT ./. 1|0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT ./. 1|0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT ./. 1|0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT 1|1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT ./. 1|0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT ./. 1|0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT ./. 1|1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT ./. 1|1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT ./. 1|1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT ./. 1|1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT ./. 1|1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT ./. 1|1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT ./. 1|1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT ./. 1|1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT ./. ./. 1|1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT 0|1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT ./. 1|1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT ./. ./. 1|1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT ./. ./. 1|1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT 1|1 ./. ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT ./. 1|1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;NumCollapsed=1;CollapseId=2.0 GT 0/1 ./. 0/1 -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT 1/0 ./. ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT 0/1 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT ./. ./. 0/1 -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT ./. ./. 1/0 -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT ./. ./. 0|1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT ./. ./. 1|0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT ./. 1|1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT ./. 1|1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT ./. 1|1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT ./. ./. 0|1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT 1|1 ./. ./. -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT ./. 1|1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT ./. ./. 0|1 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT 0|1 1|1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT ./. ./. 1|1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT ./. ./. 1|1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT 0|1 1|1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT ./. ./. 0|1 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT 1|0 ./. ./. -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT ./. ./. 1|0 -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT 0|1 1|1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT ./. ./. 0|1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT 0|1 1|1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT 0|1 1|1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT 1|0 ./. ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT ./. ./. 1|1 -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT 0|1 1|1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT ./. ./. 0|1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT 0|1 1|1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT 0|1 1|1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT ./. ./. 0|1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT 0|1 1|0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT ./. ./. 1|0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT 0|1 1|1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT ./. ./. 0|1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT ./. ./. 0|1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT 0|1 1|1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT ./. ./. 0|1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT 1|0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT ./. ./. 0|1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT 0|1 1|1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT ./. 0|1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT ./. ./. 0|1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT ./. ./. 0|1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT ./. ./. 0|1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT ./. ./. 0|1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT ./. ./. 0|1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT ./. ./. 0|1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT 0|1 1|1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT ./. ./. 0|1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT ./. ./. 0|1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT ./. ./. 0|1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT ./. ./. 0|1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT ./. ./. 0|1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT ./. ./. 0|1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT ./. ./. 0|1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT ./. ./. 0|1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT ./. ./. 0|1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT ./. ./. 0|1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT ./. ./. 0|1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT ./. ./. 0|1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT ./. ./. 0|1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT ./. ./. 0|1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT ./. ./. 0|1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT ./. 0|1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT 0|1 1|0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT ./. ./. 0|1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT ./. ./. 0|1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT ./. ./. 0|1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT ./. ./. 0|1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT ./. ./. 0|1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT ./. ./. 0|1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT ./. ./. 0|1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT ./. ./. 0|1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT ./. ./. 0|1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT 0|1 1|1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT ./. ./. 0|1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT ./. ./. 0|1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT ./. ./. 0|1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT ./. ./. 0|1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT ./. ./. 0|1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT ./. ./. 0|1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT ./. ./. 0|1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT ./. ./. 0|1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT ./. ./. 0|1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT ./. ./. 0|1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT ./. ./. 0|1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT 0|1 1|1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT ./. ./. 0|1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT ./. ./. 0|1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT ./. ./. 0|1 -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT ./. ./. 0|1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT 0|1 1|0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT ./. ./. 0|1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT ./. ./. 0|1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT ./. ./. 0|1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT ./. ./. 0|1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT ./. ./. 0|1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT ./. ./. 0|1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT ./. ./. 0|1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT ./. ./. 0|1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT ./. ./. 0|1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT ./. ./. 0|1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT ./. ./. 0|1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT ./. ./. 0|1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT ./. ./. 0|1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT ./. ./. 0|1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT ./. ./. 0|1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT ./. ./. 0|1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT ./. ./. 0|1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT 0|1 1|1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT ./. ./. 0|1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT ./. ./. 0|1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT 0|1 1|1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT ./. ./. 0|1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT 0|1 1|1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT ./. ./. 0|1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT ./. ./. 0|1 -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT ./. ./. 0|1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT 1|0 ./. ./. -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT ./. ./. 1|0 -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT ./. ./. 0|1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT ./. ./. 0|1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT ./. ./. 0|1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT ./. ./. 0|1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT 0|1 1|1 ./. -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT ./. ./. 1|0 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT ./. ./. 0|1 -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT ./. ./. 0|1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT ./. ./. 1|0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT ./. ./. 1|0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT ./. ./. 0|1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT 1|0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT ./. ./. 1|1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT ./. ./. 0|1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT ./. ./. 1|0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT ./. ./. 0|1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT ./. ./. 0|1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT 0|1 ./. ./. -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT ./. ./. 0|1 -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT 1|0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT ./. ./. 0|1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT 1|0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT ./. ./. 0|1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT ./. ./. 0|1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT ./. ./. 0|1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT ./. ./. 0|1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT ./. ./. 0|1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT ./. ./. 0|1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT ./. ./. 0|1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT ./. ./. 0|1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT ./. ./. 0|1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT ./. ./. 0|1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT ./. ./. 0|1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT ./. ./. 0|1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT ./. ./. 1|0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT 1|0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT 1|0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT 1|0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT 1|0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT 1|0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT 1|0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT 1|0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT 1|0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT ./. ./. 0|1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT ./. ./. 1|0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT 1|0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT ./. ./. 0|1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT ./. ./. 0|1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT ./. ./. 1|0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT ./. ./. 0|1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT ./. ./. 1|1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT 1|0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT ./. ./. 1|0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT ./. ./. 1|0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT ./. ./. 1|0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT ./. ./. 1|0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT ./. ./. 1|0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT ./. ./. 1|0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT ./. ./. 1|0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT ./. ./. 0|1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT ./. ./. 0|1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT ./. ./. 1|0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT ./. ./. 1|0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT 1|0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT ./. ./. 1|1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT ./. ./. 1|0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT ./. ./. 1|0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT ./. ./. 0|1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT 1|0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT ./. ./. 1|0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT ./. ./. 1|0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT ./. ./. 1|0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT ./. ./. 1|0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT ./. 0|1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT 1|0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT ./. ./. 1|0 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT 1|1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT ./. 1|0 1|0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT ./. 0|1 0|1 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT ./. ./. 1|0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT ./. ./. 1|0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT ./. ./. 1|0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT ./. ./. 1|0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT ./. ./. 1|0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT ./. ./. 1|0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT ./. ./. 1|0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT ./. ./. 1|0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT ./. ./. 1|0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT 1|1 1|1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT ./. ./. 1|0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT 1|0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT 1|1 1|0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT ./. ./. 1|0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT ./. ./. 1|0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT ./. ./. 1|0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT ./. ./. 1|0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT ./. ./. 1|0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT ./. ./. 1|0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT ./. ./. 1|0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT ./. ./. 0|1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT ./. ./. 1|0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT ./. ./. 1|1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT ./. ./. 1|0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT ./. ./. 1|0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT ./. ./. 1|0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT ./. ./. 1|0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT ./. ./. 1|0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT 1|1 1|0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT ./. ./. 1|0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT ./. ./. 1|0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT ./. ./. 1|1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT ./. ./. 1|1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT ./. ./. 1|1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT ./. ./. 1|1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT ./. ./. 1|1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT ./. ./. 0|1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT ./. ./. 0|1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT ./. ./. 0|1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT ./. ./. 1|1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT ./. ./. 1|1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT ./. ./. 1|0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT ./. ./. 1|1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT ./. ./. 1|1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT ./. ./. 1|1 -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT ./. ./. 1|1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT ./. ./. 1|1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT ./. ./. 1|1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT ./. ./. 1|1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT ./. ./. 1|0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT ./. ./. 0|1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT ./. ./. 1|1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT ./. ./. 1|1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT 1|1 1|0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT ./. ./. 1|1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT ./. ./. 1|1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT ./. ./. 1|1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT ./. ./. 1|1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT ./. ./. 1|1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT ./. ./. 1|1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT 1|1 1|0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT ./. ./. 1|1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT ./. ./. 1|1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT 1|0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT ./. 0|1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT 1|0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT 0|1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT ./. ./. 1|1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT ./. ./. 1|1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT ./. 0|1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT ./. 0|1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT ./. ./. 1|1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT ./. 0|1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT ./. 0|1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT ./. ./. 0|1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT ./. ./. 1|1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT ./. ./. 1|0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT ./. ./. 0|1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT 1|1 1|0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT ./. 0|1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT ./. ./. 1|1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT ./. 0|1 1|1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT ./. ./. 1|1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT ./. ./. 1|1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT ./. ./. 1|1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT ./. ./. 1|1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT ./. ./. 1|1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT ./. ./. 1|1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT ./. ./. 0|1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT ./. 0|1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT ./. ./. 1|0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT ./. 0|1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT ./. ./. 1|0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT ./. 0|1 0|1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT ./. ./. 1|0 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT ./. 0|1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT 0|1 1|0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT ./. 0|1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT ./. ./. 1|1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT ./. 0|1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT ./. 0|1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT ./. 0|1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT ./. 0|1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT ./. 0|1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT 1|0 ./. ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT ./. ./. 1|0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT ./. ./. 0|1 -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT ./. 0|1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT ./. ./. 1|0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT 1|0 0|1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT ./. ./. 1|1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT ./. 1|0 ./. -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT ./. 0|1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT ./. 0|1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT ./. 0|1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT ./. 0|1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT ./. 0|1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT ./. ./. 0|1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT ./. 0|1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT ./. 0|1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT ./. 0|1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT ./. 0|1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT ./. 0|1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT ./. 0|1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT ./. 0|1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT ./. 0|1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT ./. 0|1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT ./. 0|1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT 1|0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT ./. 0|1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT ./. 0|1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT ./. 0|1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT ./. 0|1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT ./. 0|1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT ./. 0|1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT ./. 0|1 1|1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT ./. ./. 1|1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT ./. ./. 0|1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT ./. ./. 0|1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT ./. ./. 0|1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT ./. ./. 1|1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT ./. ./. 1|1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT 0|1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT 0|1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT ./. 0|1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT ./. ./. 1|0 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT ./. 1|0 ./. -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT ./. ./. 0|1 -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT ./. ./. 1|0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT ./. ./. 1|0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT ./. ./. 1|0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT ./. ./. 1|0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT ./. ./. 1|0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT ./. ./. 1|0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT ./. ./. 0|1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT ./. ./. 1|0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT ./. ./. 0|1 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT 1|0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT 1|0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT 1|0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT ./. ./. 1|0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT ./. ./. 1|0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT ./. ./. 1|0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT ./. ./. 1|0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT ./. ./. 1|0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT 1|0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT ./. ./. 1|0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT ./. ./. 1|0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT ./. ./. 1|0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT ./. ./. 1|0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT 1|0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT 1|0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT ./. ./. 1|0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT 1|0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT ./. ./. 1|0 -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT 1|0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT 1|0 ./. ./. -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT ./. ./. 1|0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT ./. ./. 1/0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT ./. ./. 1|0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT 1|0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT 1|0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT ./. ./. 1|0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT ./. ./. 1|0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT ./. ./. 1|0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT 1/1 1/1 1/1 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT 1|0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT ./. ./. 1|0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT 1|0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT 1|0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT 1|0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT 1|0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT 1|0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT 1|0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT 1|0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT 1|0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT ./. ./. 1|0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT 1|0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT 1|0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT 1|0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT 1|0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT 1|0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT 1|0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT 1|0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT 1|0 ./. ./. -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT ./. ./. 1|0 -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT 1|0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT 1|0 ./. ./. -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT ./. ./. 1|0 -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT ./. ./. 0|1 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT 1|0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT ./. ./. 1|0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT ./. ./. 0|1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT 1|0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT ./. ./. 1|0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT ./. ./. 1|0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT 1|0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT 1|0 ./. ./. -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT ./. 0|1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT ./. ./. 0|1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT ./. 0|1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT ./. 0|1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT ./. ./. 0|1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT 0|1 1|1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT ./. ./. 0|1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT ./. 0|1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT ./. 0|1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT ./. 0|1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT ./. 0|1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT ./. 0|1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT ./. ./. 0|1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT 0|1 1|0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT ./. 0|1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT ./. 1|0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT ./. 1|1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT ./. 1|0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT ./. 1|0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT ./. 1/0 ./. -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT 0|1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT ./. 1|0 0|1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT ./. 1|0 0|1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT ./. 1|0 0|1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT 0|1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT ./. ./. 0|1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT 1|0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT 1|0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT 0|1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT ./. ./. 0|1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT 0|1 ./. ./. -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT ./. ./. 0|1 -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT 1|0 ./. ./. -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT 0|1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT ./. ./. 1|0 -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT ./. ./. 0|1 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT 1|0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT ./. 1|0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT ./. 1|0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT ./. ./. 0|1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT ./. 1|0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT 1|0 0|1 ./. -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT ./. 1|1 0|1 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT ./. 1|0 ./. -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT ./. ./. 1|0 -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT 1|0 0|1 ./. -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT 0|1 ./. ./. -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT ./. ./. 0|1 -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT ./. 1|0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT ./. ./. 1|0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT ./. ./. 1|0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT ./. ./. 0|1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT ./. 1|0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT 0|1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT 0|1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT 0|1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT 1|0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT 0|1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT 0|1 1|0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT 1|0 ./. ./. -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT 0|1 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT ./. 0|1 ./. -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT ./. ./. 1|0 -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT ./. ./. 0|1 -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT ./. 1|0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT 0|1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT 0|1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT 0|1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT 0|1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT 0|1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT 0|1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT 0|1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT ./. ./. 1|0 -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT 0|1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT 0|1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT ./. ./. 1|0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT 0|1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT 0|1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT ./. 0|1 0|1 -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT ./. ./. 1|0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT 1|0 1|1 ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT ./. ./. 1|0 -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT 0|1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT 0|1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT 0|1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT 0|1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT ./. 1|0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT 1|0 1|0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT 0|1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT ./. 1|0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT 0|1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT 0|1 1|0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT ./. ./. 1|0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT ./. 1|0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT ./. 1|0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT ./. 1|0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT ./. 1|0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT ./. 1|0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT ./. 1|0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT ./. 1|0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT ./. 1|0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT ./. 1|0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT ./. 1|0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT ./. 1|0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT 0|1 1|1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT 1|0 0|1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT 1|0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT ./. 0|1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT 1|0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT ./. 0|1 1|0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT ./. 0|1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT ./. 1|0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT 0|1 1|0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT ./. 1|0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT ./. ./. 1|0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT ./. 1|0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT ./. ./. 1|0 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT ./. 1|0 ./. -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT ./. ./. 1|1 -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT ./. 1|0 1|0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT 1|0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT 1|0 0|1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT 1|0 1|1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT 1|0 0|1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT ./. 1|0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT ./. 1|0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT ./. 1|0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT ./. 1|0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT ./. 1|0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT 1|0 1|1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT 1|0 0|1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT ./. 1|0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT ./. 0|1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT ./. 0|1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT ./. 1|0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT ./. 1|0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT 1|0 ./. ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT ./. 0|1 ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT ./. 1|0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT ./. 1|0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT 0|1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT ./. 1|0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT 1|1 1|1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT ./. ./. 0|1 -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT ./. 1|1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT ./. 1|1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT ./. 1|1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT ./. 1|1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT 0|1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT ./. 0|1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT ./. 1|1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT ./. 1|1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT ./. 1|0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT ./. 1|1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT ./. 1|0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT ./. 1|1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT ./. 0|1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT ./. 1|1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT ./. 1|1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT ./. 1|1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT ./. 1|1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT ./. 1|1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT ./. 1|1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT ./. 1|1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT ./. 0|1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT ./. 1|1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT ./. 1|1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT ./. 1|1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT ./. 1|1 1|0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT ./. 1|1 1|0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT ./. 1|1 1|0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT ./. 1|1 1|0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT 1|0 1|1 ./. -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT ./. ./. 1|0 -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT ./. ./. 1/0 -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT ./. 1|0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT 1|0 ./. ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;NumCollapsed=1;CollapseId=6.0 GT 1/0 1/1 1/1 -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT ./. ./. 1|0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT ./. ./. 1|0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT ./. 1|0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT ./. ./. 1|0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT ./. ./. 0|1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT ./. ./. 1|0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT ./. ./. 1|0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT ./. ./. 0|1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT ./. ./. 1|0 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT ./. 0|1 1|0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT ./. ./. 0|1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT ./. 0|1 1|0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT ./. 0|1 ./. -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT ./. ./. 1|0 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT 0|1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT ./. ./. 1|0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT ./. 1|0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT ./. ./. 0|1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT ./. ./. 1|0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT ./. 1|0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT ./. 1|1 1|1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT 1|0 1|1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT ./. ./. 1|0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT 0|1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT ./. ./. 0|1 -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT ./. 1|0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT 1|0 1|0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT ./. 0|1 1|0 -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT ./. ./. 0|1 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT 1|0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT ./. 1|0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT 1|0 1|0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT 1|0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT ./. 0|1 1|0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT 0|1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT 0|1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT 0|1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT 1|0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT 1|0 1|0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT ./. ./. 1|0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT ./. 0|1 1|0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT ./. ./. 1|1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT 1/1 1/0 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT 1|0 1|0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT 1|0 1|0 1|0 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT ./. 1|0 1|0 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT 0|1 ./. ./. -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT ./. ./. 1|1 -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT ./. 0|1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT ./. 1|0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT ./. ./. 1|1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT 1|1 1|0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT 1|1 1|0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT 1|1 1|0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT 1|0 1|0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT 1|1 1|0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT ./. ./. 1|1 -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT ./. ./. 0|1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT 1|0 ./. ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT ./. 1|0 1|0 -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT ./. ./. 1|0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT ./. 0|1 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT ./. ./. 1|0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT 1|0 1|0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT ./. ./. 0|1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT ./. ./. 1|0 -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT ./. ./. 0|1 -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT ./. ./. 1|1 -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT 1|0 ./. ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT 0|1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT ./. 1|0 ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT 0|1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT 1|0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT 1|0 ./. ./. -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT 0|1 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT ./. 0|1 1|1 -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT ./. ./. 0|1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT 0|1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT 1|0 1|0 ./. -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT ./. 0|1 1|0 -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT ./. ./. 0|1 -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT ./. ./. 0|1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT ./. 0|1 1|1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT 0|1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT 0|1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT 1|0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT 0|1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT ./. 0|1 ./. -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT ./. 1|0 1|1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT 0|1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT ./. ./. 1|0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT ./. 1|0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT 1|0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT ./. ./. 1|0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT 1/0 ./. ./. -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT 0|1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT ./. 1|0 ./. -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT ./. 0|1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT ./. 0|1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT ./. 0|1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT 0|1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT 0|1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT ./. 0|1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT ./. ./. 1|1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT ./. 1|0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT ./. 1|0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT ./. 1|0 1|1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT ./. 1|0 ./. -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT 0|1 ./. ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT ./. ./. 1|1 -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT ./. 0|1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT ./. ./. 0|1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT ./. ./. 1|0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT 1|0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT 0|1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT ./. 1|0 1|0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT ./. 0|1 ./. -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT 1|0 ./. ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT ./. ./. 1|0 -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT ./. ./. 1|0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT ./. 1|0 1|0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT ./. ./. 1|0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT ./. 1|0 1|1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT ./. ./. 0|1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT 0|1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT ./. 1|0 1|1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT ./. 1|0 1|1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT ./. 1|0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT ./. 1|0 1|1 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT 0|1 ./. ./. -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT ./. ./. 0|1 -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT ./. 1|0 1|1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT ./. 1|0 0|1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT ./. 0|1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT ./. 1|1 1|1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT ./. 1|0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT 0|1 0|1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT 1|0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT 1|0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT ./. ./. 0|1 -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT 1|0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT 1|0 ./. ./. -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT ./. 1|0 ./. -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT ./. ./. 1|0 -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT ./. ./. 0|1 -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT 1|0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT ./. 0|1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT 1|0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT 1|0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT 1|0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT ./. 1|0 1|1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT 1|0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT 1|0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT 1|0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT 1|0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT ./. 0|1 ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT 1|0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT 1|0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT 1|0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT 1|0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT 1|0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT 1|0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT 1|0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT ./. ./. 0|1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT 1|0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT 1|0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT 1|0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT ./. 1|0 1|1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT 1|0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT ./. ./. 0|1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT 1|0 ./. ./. -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT 1|0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT 1|0 0|1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT 1|0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT ./. 1|0 0|1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT ./. ./. 1|0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT 1|0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT 1|0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT 1|0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT 1|0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT 1|0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT 1|0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT ./. 1|0 1|1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT ./. 1|0 1|1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT ./. 1|0 1|1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT ./. 1|0 1|1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT ./. 1|0 1|1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT ./. 1|0 1|1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT ./. 1|0 1|1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT ./. 1|0 1|1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT 1|0 ./. ./. -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT 0|1 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT ./. 1|0 1|1 -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT ./. 1|0 1|1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT ./. 1|0 1|1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT 1|0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT 0|1 1|0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT ./. ./. 1|0 -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT ./. ./. 0|1 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT ./. 0|1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT ./. 0|1 1|1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT ./. 0|1 0|1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT 0|1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT 1|0 1|0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT 1|1 1|0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT 0|1 1|0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT 1|1 1|0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT ./. 0|1 1|1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT ./. 0|1 1|1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT ./. 1|0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT 1|1 1|0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT ./. 1|1 1|1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT 1|1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT ./. ./. 1|0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT ./. ./. 0|1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT ./. 1|1 1|1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT ./. 1|1 1|0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT ./. 1|1 1|1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT 1|0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT 1|1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT ./. ./. 1|0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT 1|1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT 1|1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT 1|0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT 0|1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT 0|1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT ./. ./. 1|0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT 0|1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT 1|0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT 0|1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT 0|1 1|0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT ./. 1|1 1|1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT 0|1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT ./. 1|1 1|1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT ./. 1|1 1|1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT ./. 1|1 0|1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT ./. ./. 1|0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT ./. 1|1 1|1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT 0|1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT ./. 1|1 1|1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT ./. 1|0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT 1|0 ./. ./. -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT 1|0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT ./. 1|0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT ./. 1|0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT ./. 1|1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT ./. 0|1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT ./. 1|1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT ./. 1|1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT ./. 1|1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT 1|0 1|1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT 1|0 1|0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT 0|1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT 1|1 1|1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT 1|0 ./. ./. -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT ./. 1|1 ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT 1|0 1|1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT ./. 1|1 1|0 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT 1|0 1|1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT ./. 1|1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT 1|0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT ./. 1|1 ./. -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT ./. ./. 0|1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT 0|1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT ./. 1|0 ./. -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT ./. ./. 1|0 -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT 0|1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT ./. ./. 0|1 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT 1|0 0|1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT ./. 1|0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT 1|0 1|1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT 0|1 ./. ./. -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT ./. ./. 0|1 -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT 0|1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT ./. ./. 1|0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT ./. ./. 1|0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT ./. 0|1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT ./. 0|1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT ./. ./. 1|0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT ./. ./. 1|0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT 1|0 1|1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT ./. 1|0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT ./. ./. 1|0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT ./. ./. 1|1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT 1|0 1|1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT ./. ./. 1|1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT 0|1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT 0|1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT ./. 0|1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT 0|1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT ./. 1|0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT ./. 0|1 ./. -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT 1/0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT ./. ./. 0/1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT 0/1 ./. ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.4 GT ./. 0/1 ./. -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT ./. ./. 1/0 -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT 1/0 ./. ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT ./. ./. 0/1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT ./. ./. 1/0 -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT 0|1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT 1|0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT ./. 0|1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT ./. 0|1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT 0|1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT 0|1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT ./. ./. 1|1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT 0|1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT 0|1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT 0|1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT 0|1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT 0|1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT 0|1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT 0|1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT 0|1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT 0|1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT 0|1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT 0|1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT 0|1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT 0|1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT 0|1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT 0|1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT 0|1 1|1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT 0|1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT ./. 1|0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT ./. ./. 0|1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT 1|0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT ./. ./. 0|1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT 1|0 ./. ./. -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT 1|0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT 1|0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT 1|0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT 1|0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT 1|0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT ./. 1|0 0|1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT 1|0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT 1|0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT ./. 1|0 0|1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT 1|0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT ./. 1|0 0|1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT 1|0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT ./. 1|0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT ./. ./. 1|1 -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT 1|0 1|0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT 1|0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT ./. 1|0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT ./. 1|0 0|1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT ./. ./. 0|1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT 1|0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT ./. ./. 0|1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT ./. ./. 1|0 -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT ./. ./. 0|1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT 1|0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT ./. ./. 0|1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT ./. 1|0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT 1|0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT 1|0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT 1|0 ./. ./. -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT 1|0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT ./. ./. 0|1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT 1|0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT 1|0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT ./. ./. 0|1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT ./. ./. 1|1 -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT 1|0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT ./. ./. 1|0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT 1|1 0|1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT 1|0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT ./. 0|1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT ./. 1|0 ./. -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT ./. 1|1 ./. -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT 1|0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT ./. ./. 0|1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT ./. 0|1 ./. -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT ./. ./. 0|1 -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT 1|0 ./. ./. -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT 0/1 1/0 1/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT 1/0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT 1|0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT ./. ./. 0|1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT 1|0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT ./. ./. 0|1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT ./. ./. 0|1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT 1|0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT ./. ./. 0|1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT ./. ./. 0|1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT 1|0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT 1|0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT 1|0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT 0|1 ./. ./. -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT ./. 1|0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT ./. ./. 1|1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT 0|1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT ./. ./. 0|1 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT 0|1 ./. ./. -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT 1|0 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT ./. ./. 1|0 -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT 0|1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT ./. ./. 0|1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT ./. ./. 0|1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT 0|1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT 0|1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT 0|1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT ./. 1|0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT 1|0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT ./. ./. 0|1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT 1|1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT 1|0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT ./. ./. 0|1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT ./. ./. 0|1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT ./. 1|0 0|1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT 1|1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT 0|1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT 0|1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT 1|0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT ./. 1|0 1|0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT 0|1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT 0|1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT 1|0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT ./. 1|0 1|0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT ./. 0|1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT 1|0 0|1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT ./. ./. 1|0 -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT 1|0 ./. ./. -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT ./. 0|1 ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT 1|1 0|1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT 0|1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT ./. ./. 0|1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT ./. ./. 1|0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT ./. 0|1 0|1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT ./. ./. 1|0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT ./. 0|1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT ./. ./. 0|1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT 1|0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT 1|0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT 1|0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT 1|0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT ./. ./. 1|0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT 0|1 1|1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT ./. ./. 0|1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT ./. 1|1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT ./. ./. 1|1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT ./. ./. 1|1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT 0|1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT ./. 0|1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT 0|1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT ./. ./. 1|1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT ./. ./. 1|1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT ./. ./. 1|1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT 1|0 ./. ./. -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT ./. ./. 1|1 -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT ./. ./. 1|1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT ./. ./. 1|1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT 0|1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT ./. ./. 1|1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT ./. ./. 1|1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT ./. ./. 1|1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT ./. ./. 1|1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT ./. ./. 1|1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT ./. ./. 1|1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT ./. ./. 1|1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT ./. ./. 1|1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT ./. ./. 1|1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT 0|1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT ./. ./. 1|1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT ./. ./. 0|1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT ./. ./. 1|1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT ./. ./. 1|1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT ./. ./. 1|1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT ./. ./. 1|1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT ./. ./. 1|1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT ./. ./. 1|1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT ./. ./. 1|1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT ./. ./. 1|1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT ./. ./. 1|1 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT 0|1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT ./. ./. 1|1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT ./. ./. 1|1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT 1|0 1|0 ./. -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT 0|1 0|1 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT ./. ./. 1|1 -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT ./. 1|0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT 0|1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT 0|1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT ./. ./. 0|1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT ./. ./. 0|1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT ./. 0|1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT 1|0 1|1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT ./. ./. 0|1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT 1|0 1|1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT ./. ./. 0|1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT 0|1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT ./. 1|0 0|1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT ./. 1|0 0|1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT ./. 0|1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT ./. 1|0 0|1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT ./. 1|0 0|1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT 1|0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT ./. 0|1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT ./. 1|0 0|1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT ./. 1|0 0|1 -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT 1|0 ./. ./. -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT 0|1 ./. ./. -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT ./. ./. 1|0 -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT ./. 1|0 0|1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT 0|1 ./. ./. -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT ./. 1|0 0|1 -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT ./. 1|0 0|1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT ./. 1|0 0|1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT ./. 1|0 0|1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT ./. 1|0 0|1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT 1|0 0|1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT ./. 1|0 0|1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT 0|1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT 1|0 1|1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT ./. ./. 0|1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT ./. 0|1 ./. -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT 1|0 1|0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT ./. ./. 0|1 -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT ./. 0|1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT ./. ./. 0|1 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT ./. 1/0 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT 1/1 0/1 ./. -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT ./. ./. 0|1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT ./. ./. 0|1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT 0|1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT ./. ./. 0|1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT 1|1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT ./. 1|0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT 1|0 ./. ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT ./. 1|0 ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT ./. 1|0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT ./. 1|0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT 1|1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT ./. 1|0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT ./. 1|0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT 1|1 1|0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT ./. ./. 0|1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT ./. 1|0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT ./. 1|0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT ./. 1|0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT ./. 0|1 1|0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT ./. ./. 0|1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT ./. ./. 1|0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT ./. 0|1 1|0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT ./. 0|1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT ./. 0|1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT ./. 1|0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT ./. 1|1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT ./. 0|1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT ./. 0|1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT ./. 1|0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT ./. 0|1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT ./. 1|1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT ./. 1|1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT ./. 1|1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT ./. 1|0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT ./. 1|1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT ./. 1|1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT ./. 1|1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT ./. 1|1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT ./. 1|1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT ./. 0|1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT ./. 1|1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT ./. 0|1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT ./. 1|1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT ./. 1|1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT ./. 1|1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT ./. 0|1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT ./. 0|1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT ./. 1|0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT ./. 0|1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT ./. 0|1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT ./. 1|0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT ./. 0|1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT 0|1 1|0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT ./. 0|1 ./. -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT ./. 0|1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT ./. 0|1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT ./. ./. 1|0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT 1|0 ./. ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT ./. 1/0 ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT ./. 0/1 ./. -chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT 0/1 ./. 1/0 -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT ./. ./. 1|0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT ./. ./. 1|0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT 0|1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT 0|1 1|1 ./. -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT 0|1 1|0 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT ./. ./. 1|0 -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT 1|0 1|0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT ./. ./. 1|0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT ./. 0|1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT ./. ./. 0|1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT 1|0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT 1|0 ./. ./. -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT ./. ./. 1|0 -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT 1|0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT ./. ./. 1|0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT 1|0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT 1|0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT 0|1 ./. ./. -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT ./. 0|1 ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT ./. ./. 1|0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT ./. ./. 1|0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT ./. ./. 1|0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT ./. 0|1 ./. -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT 1|0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT ./. 0|1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT ./. ./. 1|0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT 1|0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT ./. 0|1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT ./. ./. 1|0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT 1|0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT ./. ./. 1|0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT 1|0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT ./. ./. 1|0 -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT 0|1 ./. ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT ./. 1|0 ./. -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT ./. 0|1 ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT 1|0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT 1|0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT 0|1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT ./. ./. 1|0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT ./. ./. 0|1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT 1|0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT ./. ./. 1|0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT ./. 0|1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT 1|0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT ./. ./. 1|0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT 1|0 ./. ./. -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT ./. ./. 1|0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT ./. ./. 1|0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT 1|0 0|1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT ./. 0|1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT ./. ./. 1|0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT ./. 1|0 1|1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT ./. ./. 1|0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT ./. 0|1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT 0/1 1/0 0/1 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT 1|0 0|1 ./. -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT ./. ./. 1|0 -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT ./. ./. 1|0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT ./. 1|0 ./. -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT ./. ./. 1|0 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 0/1 ./. ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT 1|0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT ./. ./. 1|0 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT ./. ./. 1|0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT ./. ./. 1|0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT ./. ./. 1|0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT 1|0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT ./. ./. 1|0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT ./. 1|0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT 1|0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT 1|0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT ./. ./. 1|0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT 1|0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT ./. 0|1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT 1|0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT ./. ./. 1|0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT 1|0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT ./. ./. 1|0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT ./. ./. 1|0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT ./. ./. 1|0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT ./. ./. 1|0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT 1|0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT 1|0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT ./. ./. 1|0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT ./. ./. 1|0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT ./. ./. 1|0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT ./. 0|1 ./. -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT 1|0 ./. ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT ./. ./. 1|0 -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT ./. ./. 1|0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT ./. 1|0 1|0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT ./. 1|1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT ./. 1|0 1|1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT ./. ./. 1|0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT ./. 1|0 1|0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT ./. 1|0 1|0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT ./. 1|0 1|0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT ./. 1|0 1|0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT ./. 1|0 1|0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT 1|1 0|1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT 1|1 0|1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT ./. ./. 0|1 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT 0/1 ./. 1/0 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT ./. 1|0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT 1|1 0|1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT ./. 1|0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT ./. 1|0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT ./. ./. 0|1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT 1|1 0|1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT ./. 1|0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT ./. 1|0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT ./. ./. 1|0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT ./. 1|0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT 1|1 0|1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT ./. ./. 1|0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT 1|1 0|1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT ./. 0|1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT ./. ./. 1|0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT 1|1 0|1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT 1|1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT ./. ./. 1|0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT 1|1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT ./. 1|0 ./. -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT ./. 0|1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT ./. ./. 1|0 -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT ./. 1|1 1|0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT ./. 1|1 ./. -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT ./. ./. 1|0 -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT ./. ./. 0|1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT 1|0 1|1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT ./. ./. 1|0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT 1|1 0|1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT ./. ./. 0|1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT ./. ./. 0|1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT ./. 0|1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT 0|1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT ./. 0|1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT ./. 0|1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT ./. 1|0 1|1 -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT ./. 0|1 ./. -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT ./. 1|0 1|1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT ./. 1|1 1|1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT ./. 1|1 1|1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT ./. 1|1 1|1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT ./. 0|1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT 1|0 0|1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT 0|1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT 1|1 0|1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT ./. 0|1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT ./. 0|1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT 1|1 ./. ./. -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT ./. 0|1 ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT ./. ./. 0|1 -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT ./. 1|0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT ./. ./. 0|1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT ./. 1|1 1|1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT ./. 1|1 1|1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT ./. 1|0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT ./. 0|1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT 1|1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT 1|0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT ./. 1|0 1|1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT ./. 1|0 1|1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT ./. 0|1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT 1|1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT ./. 1|0 1|1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT ./. 0|1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT 1|1 0|1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT ./. 1|0 1|1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT ./. ./. 1|0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT ./. ./. 0|1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT ./. 1|0 1|1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT ./. 1|0 1|1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT ./. 1|0 1|1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT ./. 0|1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT 1|1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT ./. 1|0 1|1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT ./. 1|0 1|1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT ./. 1|0 1|1 -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT ./. 0|1 ./. -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT ./. 1|0 1|1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT ./. 1|0 1|1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT ./. 1|0 1|1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT 1|1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT ./. 0|1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT ./. 1|1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT ./. ./. 1|0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT 0|1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT ./. 1|0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT 0|1 ./. ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT ./. 1|0 1|1 -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT ./. 0|1 ./. -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT ./. 0|1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT ./. 1|0 1|1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT ./. 1|0 0|1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT ./. 1|0 1|1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT ./. 1|0 1|1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT ./. ./. 1|0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT ./. 1|0 1|1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT ./. ./. 1|0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT ./. ./. 1|0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT 0|1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT ./. 1|0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT ./. ./. 0|1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT ./. 1|0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT ./. ./. 0|1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT 0|1 1|1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT 0|1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT ./. 0|1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT 1|0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT 1|0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT 1|1 0|1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT 0|1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT 1|0 ./. ./. -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT 0|1 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT ./. 1|0 1|1 -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT ./. 1|0 1|1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT ./. 1|0 1|1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT 1|0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT 1|0 ./. ./. -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT 0/1 1/0 1/1 -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT 1|0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT 1|0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT 1|0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT ./. 1|0 1|1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT 1|0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT 1|0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT 1|0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT 1|0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT 1|0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT 1|0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT 1|0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT 1|0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT 1|0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT 1|0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT 1|0 ./. ./. -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT ./. 1|0 0|1 -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT ./. ./. 1|0 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT 1|0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT 1|0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT 1|0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT 1|1 1|0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT ./. 0|1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT 0|1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT ./. 1|1 1|1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT ./. 1|1 1|1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT 1|0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT ./. 1|1 1|1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT ./. 1|1 1|1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT ./. 1|1 1|1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT ./. 1|1 1|1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT ./. 1|1 1|1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT ./. 1|1 1|1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT 1|1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT 1|0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT ./. 1|1 1|1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT ./. 1|1 1|1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT ./. 1|1 1|1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT ./. 1|1 1|1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT ./. 1|1 1|1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT ./. ./. 0|1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT ./. 1|1 1|1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT ./. ./. 0|1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT ./. 1|1 1|1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT ./. ./. 0|1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT ./. 1|1 1|1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT ./. ./. 1|0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT ./. 1|1 1|1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT ./. 1|1 1|1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT ./. 1|1 1|1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT ./. ./. 0|1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT ./. 1|1 1|1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT ./. 1|1 1|1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT ./. ./. 0|1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT ./. 1|1 1|1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT ./. ./. 0|1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT ./. 1|1 1|0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT ./. ./. 0|1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT ./. 1|1 1|1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT ./. 1|1 1|1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT 1|1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT ./. 1|0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT 1|1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT 1|1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT 1|1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT 1|1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT 1|1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT ./. 1|1 1|1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT ./. ./. 0|1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT 1|1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT 1|1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT ./. 1|1 1|1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT ./. 1|1 0|1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT ./. ./. 0|1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT ./. ./. 0|1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT ./. 1|1 0|1 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT ./. 1|1 0|1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT ./. 1|1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT ./. ./. 0|1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT 0|1 ./. ./. -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT ./. ./. 0|1 -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT ./. ./. 0|1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT ./. 1|0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT 0|1 0|1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT ./. 1|0 0|1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT ./. 1|1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT ./. 1|1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT 1|0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT ./. ./. 0|1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT ./. ./. 0|1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT ./. ./. 0|1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT ./. ./. 0|1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT ./. ./. 1|0 -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT 1|0 ./. ./. -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT 0|1 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT ./. ./. 0|1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT ./. ./. 0|1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT ./. 1|1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT ./. ./. 0|1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT ./. 1|1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT 0|1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT ./. 0|1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT 0|1 ./. ./. -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT ./. 1|1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT ./. ./. 0|1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT ./. 1|1 0|1 -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT ./. 1|1 ./. -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT ./. ./. 0|1 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT ./. ./. 0|1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT ./. 1|1 0|1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT ./. ./. 0|1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT ./. 1|1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT ./. ./. 1|0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT ./. 1|1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT ./. ./. 0|1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT ./. 1|1 0|1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT ./. ./. 0|1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT ./. 1|1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT ./. 1|1 0|1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT 1|0 ./. ./. -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT ./. 1|1 0|1 -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT ./. 1|1 0|1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT ./. 1|1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT ./. 1|1 0|1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT ./. 0|1 1|1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT ./. 1|1 0|1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT ./. 1|1 0|1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT ./. ./. 0|1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT ./. 1|1 0|1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT ./. 1|0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT ./. 1|0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT ./. ./. 1|0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT ./. 1|1 0|1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT ./. ./. 0|1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT 1|1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT ./. ./. 1|0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT ./. ./. 0|1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT ./. 1|1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT ./. 1|1 0|1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT ./. ./. 0|1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT ./. ./. 0|1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT ./. 0|1 0|1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT ./. ./. 0|1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT ./. ./. 0|1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT ./. ./. 0|1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT ./. ./. 0|1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT 1|0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT 1|0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT ./. ./. 0|1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT ./. 0|1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT ./. ./. 0|1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT ./. 0|1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT ./. 1|0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT ./. 0|1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT ./. 0|1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT ./. 0|1 ./. -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT ./. ./. 0|1 -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT 0|1 ./. ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT ./. 1|0 1|0 -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT ./. 0|1 ./. -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT ./. 0|1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT ./. 0|1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT ./. 0|1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT ./. 1|0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT ./. 0|1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT ./. 0|1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT ./. 0|1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT 1|0 1|1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT 0|1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT 1|0 0|1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT ./. 0|1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT ./. ./. 0|1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT ./. 0|1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT 1|0 0|1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT ./. ./. 0|1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT ./. 1|0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT ./. ./. 0|1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT ./. 0|1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT 0|1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT ./. 1|0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT 1|0 0|1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT ./. ./. 0|1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT ./. ./. 1|0 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT ./. ./. 0|1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT ./. ./. 0|1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT ./. 1|0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT ./. ./. 0|1 -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT 1|0 ./. ./. -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT ./. 1|0 ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT ./. ./. 0|1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT ./. ./. 0|1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT ./. ./. 0|1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT ./. ./. 0|1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT ./. ./. 0|1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT ./. ./. 0|1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT ./. ./. 0|1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT ./. 1|0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT ./. ./. 0|1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT ./. ./. 0|1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT ./. ./. 0|1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT ./. ./. 0|1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT ./. ./. 0|1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT ./. ./. 0|1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT 0|1 1|0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT ./. ./. 0|1 -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT ./. ./. 0|1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT 1|0 0|1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT ./. ./. 1|0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT 1|0 0|1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT 1|0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT 1|0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT 1|0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT ./. ./. 0|1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT 1|0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT 1|0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT 1|0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT ./. 1|0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT 1|0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT 1|0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT 1|0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT ./. 1|0 ./. -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT 1|0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT 1|0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT 1|0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT 1|0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT 1|0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT ./. 1|0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT ./. 1|0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT ./. 1|0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT 1|1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT ./. 1|0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT 0|1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT 0|1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT 0|1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT 0|1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT 0|1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT 0|1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT 0|1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT 0|1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT 0|1 0|1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT 0|1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT 0|1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT 0|1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT 0|1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT 0|1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT 0|1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT 0|1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT 0|1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT 0|1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT 0|1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT 0|1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT 0|1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT 0|1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT 0|1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT 0|1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT ./. ./. 0|1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT ./. 0|1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT ./. ./. 0|1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT 1|0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT ./. ./. 0|1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT ./. 0|1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT 1|0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT 1|0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT 1|0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT 1|0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT 1|0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT 1|0 1|0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT ./. 1|0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT 1|0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT 0|1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT ./. 0|1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT ./. 0|1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT ./. 0|1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT 0|1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT ./. 0|1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT ./. 0|1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT ./. 0|1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT ./. ./. 0|1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT ./. 0|1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT ./. 1|0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT ./. 1|0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT 1|0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT 0|1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT ./. 0|1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT ./. 0|1 0|1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT ./. 0|1 0|1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT ./. ./. 0|1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT ./. ./. 0|1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT ./. 0|1 0|1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT 0|1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT ./. 0|1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT ./. 0|1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT ./. 1|0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT ./. 0|1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT ./. 1|1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT ./. 1|1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT ./. 1|1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT ./. 1|1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT ./. 1|1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT ./. 1|1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT ./. 1|1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT ./. 1|1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT ./. 1|1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT ./. 1|1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT ./. 1|1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT ./. 1|1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT ./. 1|1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT ./. 1|1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT 0|1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT ./. 1|1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT ./. 1|1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT ./. ./. 0|1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT ./. 1|0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT ./. 1|0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT ./. 1|0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT ./. 1|0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT ./. 1|0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT ./. 1|0 ./. -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT ./. 1|1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT ./. 1|1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT ./. 0|1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT ./. 1|1 0|1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT 0|1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT 0|1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT ./. 1|1 0|1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT ./. 1|1 0|1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT 0|1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT ./. 1|1 0|1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT 0|1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT ./. ./. 1|0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT ./. ./. 1|0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT ./. ./. 1|0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT ./. 0|1 0|1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT 1|0 ./. ./. -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT 0|1 ./. ./. -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT ./. 1|0 1|0 -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT ./. 0|1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT ./. ./. 0|1 -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT 1|0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT 1|0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT 1|0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT 1|0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT 1|0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT 0|1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT 1|0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT 1|0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT 1|0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT 1|0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT 1|0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT 1|0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT 1|0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT 1|0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT 1|0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT 1|0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT 1|0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT 1|0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT 1|0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT ./. ./. 0|1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT 1|0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT 1|0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT 1|0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT 1|0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT ./. 1|0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT 1|0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT 1|0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT 1|0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT 1|0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT 1|0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT 1|0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT 1|0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT 1|0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT 1|0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT 1|0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT ./. ./. 0|1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT 1|0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT 1|0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT 1|0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT 1|0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT 1|0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT 1|0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT 1|0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT 1|0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT 1|0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT 1|0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT 1|0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT 1|0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT 1|0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT 1|0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT 1|0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT 1|0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT 1|0 ./. ./. -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT 1|0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT 1|0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT 1|0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT 1|0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT 1|0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT 1|0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT 1|0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT 1|0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT ./. ./. 1|0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT ./. 1|1 0|1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT 1|0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT 1|0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT 1|0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT 1|0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT 1|0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT 1|0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT 1|0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT ./. ./. 0|1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT 1|0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT 1|0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT 1|0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT ./. ./. 0|1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT 1|0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT 0|1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT 0|1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT 1|1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT 1|1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT 0|1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT 1|1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT 1|1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT 1|1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT ./. ./. 1|0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT 1|1 ./. ./. -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT ./. 1|0 1|0 -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT 1|1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT 0|1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT 1|1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT 1|0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT 1|0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT 1|0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT 1|0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT ./. ./. 0|1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT 1|0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT 1|0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT 1|0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT 0|1 1|0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT 1|0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT 1|0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT 1|0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT 1|0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT 1|0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT 1|0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT 1|0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT ./. 0|1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT ./. ./. 1|1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT 1|0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT ./. ./. 1|0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT 1|0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT 1|0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT 1|0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT 1|0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT 1|0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT 1|0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT 1|0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT 1|0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT 1|0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT 1|0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT 1|0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT 1|0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT ./. ./. 0|1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT 1|0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT 1|0 ./. ./. +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;NumCollapsed=2;CollapseId=1.0 GT:DP:AD 1/1:35:19,16 1/1:14:7,7 1/0:17:8,9 +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;NumCollapsed=1;CollapseId=2.0 GT:DP:AD 0/1:29:9,20 ./.:33:12,21 0/1:36:12,24 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139 GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514 GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438 GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179 GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;NumCollapsed=1;CollapseId=4.0 GT:DP:AD 1/1:34:18,16 1/1:35:11,24 1/1:25:13,12 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;NumCollapsed=1;CollapseId=6.0 GT:DP:AD 0/1:27:19,8 1/1:27:20,7 1/1:23:7,16 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;NumCollapsed=1;CollapseId=8.1 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;NumCollapsed=1;CollapseId=8.3 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;NumCollapsed=1;CollapseId=10.0 GT:DP:AD ./.:30:19,11 1/0:43:20,23 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT:DP:AD ./.:15:10,5 1/0:29:9,20 ./.:30:15,15 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT:DP:AD ./.:38:18,20 0/1:34:22,12 ./.:28:13,15 +chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT:DP:AD 0/1:26:8,18 ./.:41:17,24 1/0:30:17,13 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 diff --git a/repo_utils/test_files/answer_key/multi_removed_common.vcf b/repo_utils/test_files/answer_key/multi_removed_common.vcf index 477e5474..3aad3516 100644 --- a/repo_utils/test_files/answer_key/multi_removed_common.vcf +++ b/repo_utils/test_files/answer_key/multi_removed_common.vcf @@ -36,6 +36,8 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= ##INFO= @@ -47,11 +49,11 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-82;EndDistance=-82;TruScore=66;MatchId=1.0 GT ./. 1/1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=-4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.0 GT ./. ./. 0/1 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT ./. 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=-1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT 0/1 ./. 1/1 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT 0/1 ./. ./. -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.4 GT ./. 1/0 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT ./. 1/0 ./. +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.98913;PctSizeSimilarity=1;PctRecOverlap=0.681159;SizeDiff=0;StartDistance=22;EndDistance=22;TruScore=89;MatchId=1.0 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=82;EndDistance=82;TruScore=66;MatchId=1.0 GT:DP:AD 1/1:35:19,16 ./.:31:21,10 1/0:17:8,9 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.1 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.3 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 diff --git a/repo_utils/test_files/answer_key/multi_removed_first.vcf b/repo_utils/test_files/answer_key/multi_removed_first.vcf index 477e5474..9285c60e 100644 --- a/repo_utils/test_files/answer_key/multi_removed_first.vcf +++ b/repo_utils/test_files/answer_key/multi_removed_first.vcf @@ -36,6 +36,8 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= ##INFO= @@ -47,11 +49,11 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-82;EndDistance=-82;TruScore=66;MatchId=1.0 GT ./. 1/1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=-4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.0 GT ./. ./. 0/1 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT ./. 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=-1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT 0/1 ./. 1/1 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT 0/1 ./. ./. -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.4 GT ./. 1/0 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT ./. 1/0 ./. +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-82;EndDistance=-82;TruScore=66;MatchId=1.0 GT:DP:AD ./.:36:13,23 1/1:14:7,7 ./.:40:19,21 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.0 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.3 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 diff --git a/repo_utils/test_files/answer_key/multi_removed_maxqual.vcf b/repo_utils/test_files/answer_key/multi_removed_maxqual.vcf index 477e5474..9285c60e 100644 --- a/repo_utils/test_files/answer_key/multi_removed_maxqual.vcf +++ b/repo_utils/test_files/answer_key/multi_removed_maxqual.vcf @@ -36,6 +36,8 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= ##INFO= @@ -47,11 +49,11 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-82;EndDistance=-82;TruScore=66;MatchId=1.0 GT ./. 1/1 ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=-4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.0 GT ./. ./. 0/1 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT ./. 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=-1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT 0/1 ./. 1/1 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT 0/1 ./. ./. -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.4 GT ./. 1/0 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT ./. 1/0 ./. +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996154;PctSizeSimilarity=1;PctRecOverlap=0.130435;SizeDiff=0;StartDistance=-60;EndDistance=-60;TruScore=70;MatchId=1.0 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;PctSeqSimilarity=0.996711;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-82;EndDistance=-82;TruScore=66;MatchId=1.0 GT:DP:AD ./.:36:13,23 1/1:14:7,7 ./.:40:19,21 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;PctSeqSimilarity=0.986631;PctSizeSimilarity=0.978723;PctRecOverlap=0.978836;SizeDiff=4;StartDistance=0;EndDistance=0;TruScore=98;MatchId=2.0 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;PctSeqSimilarity=0.997159;PctSizeSimilarity=1;PctRecOverlap=1;SizeDiff=0;StartDistance=0;EndDistance=0;TruScore=99;MatchId=4.0 GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;PctSeqSimilarity=0.995604;PctSizeSimilarity=0.995595;PctRecOverlap=1;SizeDiff=1;StartDistance=0;EndDistance=0;TruScore=99;MatchId=6.0 GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;PctSeqSimilarity=0.957645;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-417;EndDistance=-417;TruScore=65;MatchId=8.1 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;PctSeqSimilarity=0.998473;PctSizeSimilarity=0.996835;PctRecOverlap=0.962085;SizeDiff=-2;StartDistance=-23;EndDistance=-23;TruScore=98;MatchId=8.3 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;PctSeqSimilarity=0.997126;PctSizeSimilarity=1;PctRecOverlap=0;SizeDiff=0;StartDistance=-95;EndDistance=-95;TruScore=66;MatchId=10.0 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 diff --git a/repo_utils/test_files/answer_key/multi_vcf2df.jl b/repo_utils/test_files/answer_key/multi_vcf2df.jl index 4a058fa1..6828ee3e 100644 Binary files a/repo_utils/test_files/answer_key/multi_vcf2df.jl and b/repo_utils/test_files/answer_key/multi_vcf2df.jl differ diff --git a/repo_utils/test_files/answer_key/repmask.vcf b/repo_utils/test_files/answer_key/repmask.vcf index ba4ee1cb..dc9a725f 100644 --- a/repo_utils/test_files/answer_key/repmask.vcf +++ b/repo_utils/test_files/answer_key/repmask.vcf @@ -36,3520 +36,3522 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT ./. 1|0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT ./. 1|0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT ./. ./. 1|1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT ./. 1|0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT ./. ./. 0|1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT ./. 1|0 ./. -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT ./. ./. 0|1 -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT ./. 1|0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT ./. 1|0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT ./. ./. 0|1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT ./. ./. 1|0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT ./. 1|0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT ./. ./. 0|1 -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT ./. 1|0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT ./. 1|0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT ./. 1|0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT ./. 1|0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT ./. 1|0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT ./. 0|1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT ./. ./. 1|0 -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT ./. 0|1 1|0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT ./. 1|0 ./. -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT ./. 1|0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT ./. 1|0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT ./. 1|0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT ./. 1|0 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT 1|1 ./. ./. -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT ./. 1|1 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT ./. ./. 1|0 -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT ./. 0|1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT 1|1 1|0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT 1|1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT ./. 1|0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT 1|1 1|1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT 1|1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT 1|1 1|0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT 1|1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT ./. 1|0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT 0|1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT ./. ./. 1|0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT 1|0 0|1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT ./. 1|1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT ./. 1|1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT ./. ./. 1|0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT 1|0 ./. ./. -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT 0|1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT ./. 1|1 1|0 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT ./. ./. 0|1 -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT 0|1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT ./. 1|1 1|0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT ./. ./. 1|0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT ./. ./. 1|0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT 1|0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT ./. 1|1 ./. -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT 1|1 ./. ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT ./. ./. 0|1 -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT 1|1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT ./. ./. 0|1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT ./. ./. 0|1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT ./. 1|1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT ./. 0|1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT 1|1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT ./. 1|0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT ./. 1|0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT ./. 1|0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT ./. ./. 0|1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT ./. 1|0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT ./. 0|1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT 0|1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT 1|1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT ./. 1|0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT ./. 1|0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT ./. 1|0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT ./. 1|0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT ./. 1|0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT ./. 1|0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT ./. 1|0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT 1|1 ./. ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT 0|1 0|1 ./. -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT ./. 1|0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT ./. 1|0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT ./. 1|0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT ./. 1|0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT 0|1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT 1|1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT ./. 1|0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT ./. ./. 0|1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT ./. 1|0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT ./. 1|0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT 1|1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT ./. 1|0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT ./. 1|0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT ./. 0|1 ./. -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT ./. 1|0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT ./. ./. 0|1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT ./. 1|0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT ./. ./. 0|1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT ./. 1|0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT ./. 1|0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT ./. 1|0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT ./. 1|0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT ./. 1|0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT ./. 1|0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT ./. 0|1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT ./. 1|0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT ./. 1|0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT ./. 1|0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT ./. 1|0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT 0|1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT ./. 1|0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT ./. 1|1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT ./. 1|0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT ./. 1|0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT ./. 1|0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT ./. ./. 1|0 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT 0|1 1|0 ./. -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT ./. ./. 1|1 -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT ./. 1|0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT ./. 1|0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT ./. 1|0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT ./. 1|0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT ./. 1|0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT ./. 1|0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT ./. 1|0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT 1|1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT ./. 1|0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT ./. 1|0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT ./. 1|1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT ./. 1|1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT ./. 1|1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT ./. 1|1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT ./. 1|1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT ./. 1|1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT ./. 1|1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT ./. 1|1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT ./. ./. 1|1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT 0|1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT ./. 1|1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT ./. ./. 1|1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT ./. ./. 1|1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT 1|1 ./. ./. -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69 GT 1/1 ./. 1/0 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT ./. 1/1 ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT ./. 1|1 ./. -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT ./. ./. 0|1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT ./. ./. 1|0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT ./. 1|1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT ./. 1|1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT ./. 1|1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT ./. ./. 0|1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT 1|1 ./. ./. -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT ./. 1|1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT ./. ./. 0|1 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT 0|1 1|1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT ./. ./. 1|1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT ./. ./. 1|1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT 0|1 1|1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT ./. ./. 0|1 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT 1|0 ./. ./. -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT ./. ./. 1|0 -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT 0|1 1|1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT 0|1 1|1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT ./. ./. 0|1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT 0|1 1|1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT 0|1 1|1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT 0|1 1|1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT 0|1 1|1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT 0|1 1|1 ./. -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT 1|0 ./. ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT ./. ./. 1|1 -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT 0|1 1|1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT ./. ./. 0|1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT 0|1 1|1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT 0|1 1|1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT ./. ./. 0|1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT 0|1 1|1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT 0|1 1|0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT ./. ./. 1|0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT 0|1 1|1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT ./. ./. 0|1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT ./. ./. 0|1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT 0|1 1|1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT ./. ./. 0|1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT 1|0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT ./. ./. 0|1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT 0|1 1|1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT ./. 0|1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT ./. ./. 0|1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT ./. ./. 0|1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT ./. ./. 0|1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT ./. ./. 0|1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT ./. ./. 0|1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT ./. ./. 0|1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT 0|1 1|1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT ./. ./. 0|1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT ./. ./. 0|1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT ./. ./. 0|1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT ./. ./. 0|1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT ./. ./. 0|1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT ./. ./. 0|1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT ./. ./. 0|1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT ./. ./. 0|1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT ./. ./. 0|1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT 0|1 1|1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT ./. ./. 0|1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT ./. ./. 0|1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT ./. ./. 0|1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT ./. ./. 0|1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT ./. ./. 0|1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT ./. ./. 0|1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT ./. 0|1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT 0|1 1|0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT ./. ./. 0|1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT ./. ./. 0|1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT ./. ./. 0|1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT ./. ./. 0|1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT 0|1 1|1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT ./. ./. 0|1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT ./. ./. 0|1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT ./. ./. 0|1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT ./. ./. 0|1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT ./. ./. 0|1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT 0|1 1|1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT ./. ./. 0|1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT ./. ./. 0|1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT ./. ./. 0|1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT 0|1 1|1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT ./. ./. 0|1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT ./. ./. 0|1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT ./. ./. 0|1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT ./. ./. 0|1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT ./. ./. 0|1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT ./. ./. 0|1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT ./. ./. 0|1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT ./. ./. 0|1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT 0|1 1|1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT ./. ./. 0|1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT ./. ./. 0|1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT ./. ./. 0|1 -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT ./. ./. 0|1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT ./. 0|1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT 0|1 1|0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT 0|1 1|1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT ./. ./. 0|1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT ./. ./. 0|1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT ./. ./. 0|1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT ./. ./. 0|1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT ./. ./. 0|1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT ./. ./. 0|1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT ./. ./. 0|1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT ./. ./. 0|1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT ./. ./. 0|1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT ./. ./. 0|1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT 0|1 1|1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT ./. ./. 0|1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT ./. ./. 0|1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT ./. ./. 0|1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT ./. ./. 0|1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT ./. ./. 0|1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT ./. ./. 0|1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT ./. ./. 0|1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT 0|1 1|1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT ./. ./. 0|1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT ./. ./. 0|1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT 0|1 1|1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT ./. ./. 0|1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT 0|1 1|1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT ./. ./. 0|1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT ./. ./. 0|1 -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT 0|1 1|1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT ./. ./. 0|1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT 1|0 ./. ./. -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT 0|1 1|1 ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT ./. ./. 1|0 -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT ./. ./. 0|1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT ./. ./. 0|1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT ./. ./. 0|1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT ./. ./. 0|1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT 0|1 1|1 ./. -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT ./. ./. 1|0 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT ./. ./. 0|1 -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT ./. ./. 0|1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT ./. ./. 1|0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT ./. ./. 1|0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT ./. ./. 0|1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT 1|0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT ./. ./. 1|1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT ./. ./. 0|1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT ./. ./. 1|0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT ./. ./. 0|1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT ./. ./. 0|1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT 0|1 ./. ./. -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT ./. ./. 0|1 -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT 1|0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT ./. ./. 0|1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT 1|0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT ./. ./. 0|1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT ./. ./. 0|1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT ./. ./. 0|1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT ./. ./. 0|1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT ./. ./. 0|1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT ./. ./. 0|1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT ./. ./. 0|1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT ./. ./. 0|1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT ./. ./. 0|1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT ./. ./. 0|1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT ./. ./. 0|1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT ./. ./. 0|1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT ./. ./. 1|0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT 1|0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT 1|0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT 1|0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT 1|0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT 1|0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT 1|0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT 1|0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT 1|0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT ./. ./. 0|1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT ./. ./. 1|0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT 1|0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT ./. ./. 0|1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT ./. ./. 0|1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT ./. ./. 1|0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT ./. ./. 0|1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT ./. ./. 1|1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT 1|0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT ./. ./. 1|0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT ./. ./. 1|0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT ./. ./. 1|0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT ./. ./. 1|0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT ./. ./. 1|0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT ./. ./. 1|0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT ./. ./. 1|0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT ./. ./. 0|1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT ./. ./. 0|1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT ./. ./. 1|0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT ./. ./. 1|0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT 1|0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT ./. ./. 1|1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT ./. ./. 1|0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT ./. ./. 1|0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT ./. ./. 0|1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT 1|0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT ./. ./. 1|0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT ./. ./. 1|0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT ./. ./. 1|0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT ./. ./. 1|0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT ./. 0|1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT 1|0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT ./. ./. 1|0 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT 1|1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT ./. 1|0 1|0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT ./. 0|1 0|1 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT ./. ./. 1|0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT ./. ./. 1|0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT ./. ./. 1|0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT ./. ./. 1|0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT ./. ./. 1|0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT ./. ./. 1|0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT ./. ./. 1|0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT ./. ./. 1|0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT ./. ./. 1|0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT 1|1 1|1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT ./. ./. 1|0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT 1|0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT 1|1 1|0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT ./. ./. 1|0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT ./. ./. 1|0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT ./. ./. 1|0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT ./. ./. 1|0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT ./. ./. 1|0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT ./. ./. 1|0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT ./. ./. 1|0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT ./. ./. 0|1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT ./. ./. 1|0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT ./. ./. 1|1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT ./. ./. 1|0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT ./. ./. 1|0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT ./. ./. 1|0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT ./. ./. 1|0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT ./. ./. 1|0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT 1|1 1|0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT ./. ./. 1|0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT ./. ./. 1|0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT ./. ./. 1|1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT ./. ./. 1|1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT ./. ./. 1|1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT ./. ./. 1|1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT ./. ./. 1|1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT ./. ./. 0|1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT ./. ./. 0|1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT ./. ./. 0|1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT ./. ./. 1|1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT ./. ./. 1|1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT ./. ./. 1|0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT ./. ./. 1|1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT ./. ./. 1|1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT ./. ./. 1|1 -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT ./. ./. 1|1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT ./. ./. 1|1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT ./. ./. 1|1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT ./. ./. 1|1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT 1|1 1|0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT ./. ./. 1|0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT ./. ./. 0|1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT ./. ./. 1|1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT ./. ./. 1|1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT 1|1 1|0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT ./. ./. 1|1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT 1|1 1|0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT ./. ./. 1|1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT ./. ./. 1|1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT 1|1 1|0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT ./. ./. 1|1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT 1|1 1|0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT ./. ./. 1|1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT ./. ./. 1|1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT 1|1 1|0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT ./. ./. 1|1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT ./. ./. 1|1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT 1|0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT ./. 0|1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT 1|0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT 0|1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT ./. ./. 1|1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT ./. ./. 1|1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT ./. 0|1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT ./. 0|1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT ./. ./. 1|1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT ./. 0|1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT ./. 0|1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT ./. 0|1 1|1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT ./. ./. 0|1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT ./. ./. 1|1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT ./. ./. 1|0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT ./. ./. 0|1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT ./. ./. 0|1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT 1|1 1|0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT ./. 0|1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT ./. 0|1 1|1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT ./. ./. 1|1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT ./. 0|1 1|1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT ./. ./. 1|1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT ./. ./. 1|1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT ./. ./. 1|1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT ./. ./. 1|1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT ./. ./. 1|1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT ./. ./. 1|1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT ./. ./. 0|1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT ./. 0|1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT ./. ./. 1|0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT ./. 0|1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT ./. ./. 1|0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT ./. 0|1 1|1 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT ./. 0|1 0|1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT ./. ./. 1|0 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT ./. 0|1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT 0|1 1|0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT ./. 0|1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT ./. ./. 1|1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT ./. 0|1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT ./. 0|1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT ./. 0|1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT ./. 0|1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT ./. 0|1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT 1|0 ./. ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT ./. 0|1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT ./. ./. 1|0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT ./. ./. 0|1 -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT ./. 0|1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT ./. ./. 1|0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT 1|0 0|1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT ./. ./. 1|1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT ./. 1|0 ./. -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT ./. 0|1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT ./. 0|1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT ./. 0|1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT ./. 0|1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT ./. 0|1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT ./. ./. 0|1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT ./. 0|1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT ./. 0|1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT ./. 0|1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT ./. 0|1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT ./. 0|1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT ./. 0|1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT ./. 0|1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT ./. 0|1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT ./. 0|1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT ./. 0|1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT ./. 0|1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT 1|0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT ./. 0|1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT ./. 0|1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT ./. 0|1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT ./. 0|1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT ./. 0|1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT ./. 0|1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT ./. 0|1 1|1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT ./. ./. 1|1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT ./. ./. 0|1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT ./. ./. 0|1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT ./. ./. 0|1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT ./. ./. 1|1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT ./. ./. 1|1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT 0|1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT 0|1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT ./. 0|1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT ./. ./. 1|0 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT ./. 1|0 ./. -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT ./. ./. 0|1 -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT ./. ./. 1|0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT ./. ./. 1|0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT ./. ./. 1|0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT ./. ./. 1|0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT ./. ./. 1|0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT ./. ./. 1|0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT ./. ./. 0|1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT ./. ./. 1|0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT 0|1 1|1 ./. -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT ./. ./. 1|0 -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT ./. ./. 0|1 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT 1|0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT 1|0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT 1|0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT ./. ./. 1|0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT ./. ./. 1|0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT ./. ./. 1|0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT ./. ./. 1|0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT ./. ./. 1|0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT 1|0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT ./. ./. 1|0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT ./. ./. 1|0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT ./. ./. 1|0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT ./. ./. 1|0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT 1|0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT 1|0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT ./. ./. 1|0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT 1|0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT ./. ./. 1|0 -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184 GT 0/1 ./. ./. -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188 GT ./. ./. 0/1 -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT 1|0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT 1|0 ./. ./. -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139;RM_score=97;RM_repeat=(GGGA)N;RM_clsfam=Simple_repeat GT 1/0 ./. ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438;RM_score=300;RM_repeat=(AGGG)N;RM_clsfam=Simple_repeat GT 0/1 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514;RM_score=360;RM_repeat=(AGGG)N;RM_clsfam=Simple_repeat GT ./. ./. 0/1 -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179;RM_score=117;RM_repeat=(GGGA)N;RM_clsfam=Simple_repeat GT ./. ./. 1/0 -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT ./. ./. 1|0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT ./. ./. 1|0 -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT ./. ./. 1/0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT 1|0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT 1|0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT ./. ./. 1|0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT ./. ./. 1|0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT ./. ./. 1|0 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT 1|0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT ./. ./. 1|0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT 1|0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT 1|0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT 1|0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT 1|0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT 1|0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT 1|0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT 1|0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT 1|0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT ./. ./. 1|0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT 1|0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT 1|0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT 1|0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT 1|0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT 1|0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT 1|0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT 1|0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT 1|0 ./. ./. -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT ./. ./. 1|0 -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT 1|0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT 1|0 ./. ./. -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT ./. ./. 1|0 -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT ./. ./. 0|1 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT 1|0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT ./. ./. 1|0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT ./. ./. 0|1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT 1|0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT ./. ./. 1|0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT ./. ./. 1|0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT 1|0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT 1|0 ./. ./. -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT ./. 0|1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT ./. ./. 0|1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT ./. 0|1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT ./. 0|1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT ./. ./. 0|1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT 0|1 1|1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT ./. ./. 0|1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT ./. 0|1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT ./. 0|1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT ./. 0|1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT ./. 0|1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT ./. 0|1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;RM_score=129;RM_repeat=ALUJO;RM_clsfam=SINE/Alu GT 1/1 ./. 1/1 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;RM_score=122;RM_repeat=ALUJR;RM_clsfam=SINE/Alu GT ./. 1/1 ./. -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT ./. ./. 0|1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT 0|1 1|0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT ./. 0|1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT ./. 1|0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT ./. 1|1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT ./. 1|0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT ./. 1|0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT 0|1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT ./. 1|0 0|1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT 0|1 0|1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT ./. 1|0 0|1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT ./. 1|0 0|1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT 0|1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT ./. 0|1 1|0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT ./. ./. 0|1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT 1|0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT 1|0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT 0|1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT ./. ./. 0|1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT 0|1 ./. ./. -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT ./. ./. 0|1 -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT 1|0 ./. ./. -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT 0|1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT ./. ./. 1|0 -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT ./. ./. 0|1 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT 1|0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT ./. 1|0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT ./. 1|0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT ./. ./. 0|1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT ./. 1|0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT 1|0 0|1 ./. -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT ./. 1|1 0|1 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT ./. 1|0 ./. -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT ./. ./. 1|0 -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT 1|0 0|1 ./. -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT 0|1 ./. ./. -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT ./. ./. 1|0 -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT ./. ./. 0|1 -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT ./. 1|0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT ./. ./. 1|0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT ./. ./. 1|0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT ./. ./. 0|1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT ./. 1|0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT 0|1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT 0|1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT 0|1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT 1|0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT 0|1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT 0|1 1|0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT 1|0 ./. ./. -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT 0|1 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT ./. 0|1 ./. -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT ./. ./. 1|0 -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT ./. ./. 0|1 -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT ./. 1|0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT 0|1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT 0|1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT 0|1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT 0|1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT 0|1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT 0|1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT 0|1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT 0|1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT ./. ./. 1|0 -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT 0|1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT 0|1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT ./. ./. 1|0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT 0|1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT 0|1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT 0|1 ./. ./. -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT ./. 0|1 0|1 -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT 0|1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT ./. ./. 1|0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT 1|0 1|1 ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT ./. ./. 1|0 -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT 0|1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT 0|1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT 0|1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT 0|1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT ./. 1|0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT 1|0 1|0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT 0|1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT ./. 1|0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT 0|1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT 0|1 1|0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT 0|1 1|0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT 0|1 1|0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT 0|1 1|0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT ./. ./. 1|0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT 0|1 1|0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT 0|1 1|0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT ./. 1|0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT ./. 1|0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT ./. 1|0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT ./. 1|0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT ./. 1|0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT ./. 1|0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT ./. 1|0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT ./. 1|0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT ./. 1|0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT ./. 1|0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT ./. 1|0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT 0|1 1|1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT 1|0 0|1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT 1|0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT ./. 0|1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT 1|0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT ./. 0|1 1|0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT ./. 0|1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT 0|1 1|0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT ./. 1|0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT 0|1 1|0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT ./. 1|0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT ./. ./. 1|0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT ./. 1|0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT ./. ./. 1|0 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT ./. 1|0 ./. -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT ./. ./. 1|1 -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT ./. 1|0 1|0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT 1|0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT 1|0 0|1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT 1|0 1|1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT 1|0 0|1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT ./. 1|0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT ./. 1|0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT ./. 1|0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT ./. 1|0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT 1|0 1|1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT ./. 1|0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT 1|0 1|1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT 1|0 0|1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT ./. 1|0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT 1|0 1|1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT ./. 0|1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT ./. 0|1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT 1|0 0|1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT ./. 1|0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT ./. 1|0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT 1|0 ./. ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT ./. 0|1 ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT 1|0 1|1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT ./. 1|0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT 1|0 0|1 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT 1|0 1|1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT ./. 1|0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT ./. 1|0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT 0|1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT ./. 1|0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT 1|0 1|1 ./. -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT 1|1 1|1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT ./. ./. 0|1 -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT ./. 1|1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT ./. 1|1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT ./. 1|1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT ./. 1|1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT 0|1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT ./. 0|1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT ./. 1|1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT ./. 1|1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT ./. 1|0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT ./. 1|1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT ./. 1|0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT ./. 1|1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT ./. 0|1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT ./. 1|1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT ./. 1|1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT ./. 1|1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT ./. 1|1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT ./. 1|1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT ./. 1|1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT ./. 1|1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT ./. 0|1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT ./. 1|1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT ./. 1|1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT ./. 1|1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT ./. 1|1 1|0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT ./. 1|1 1|0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT ./. 1|1 1|0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT ./. 1|1 1|0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT 1|0 1|1 ./. -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT ./. ./. 1|0 -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT ./. 1/0 ./. -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT ./. ./. 1/0 -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT ./. 1|0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT 1|0 ./. ./. -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT ./. ./. 1|0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT ./. ./. 1|0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT ./. 1|0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT ./. ./. 1|0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT ./. ./. 0|1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT ./. ./. 1|0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT ./. ./. 1|0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT ./. ./. 0|1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT ./. ./. 1|0 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT ./. 0|1 1|0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT ./. ./. 0|1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT ./. 0|1 1|0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT ./. 0|1 ./. -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT ./. ./. 1|0 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT 0|1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT ./. ./. 1|0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT ./. 1|0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT ./. ./. 0|1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT ./. ./. 1|0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT ./. 1|0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT ./. 1|1 1|1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT 1|0 1|0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT 1|0 1|1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT ./. ./. 1|0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT 0|1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT ./. ./. 0|1 -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT ./. 0|1 1|0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT ./. 0|1 1|0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT 1|0 1|0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT ./. 1|0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT 1|0 1|0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT ./. 0|1 1|0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT 0|1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT ./. 0|1 1|0 -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT ./. ./. 0|1 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT 1|0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT ./. 1|0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT ./. 0|1 1|0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT 1|0 1|0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT 1|0 1|0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT 1|0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT ./. 0|1 1|0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT 0|1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT 0|1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT 0|1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT 1|0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT 1|0 1|0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT ./. ./. 1|0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT ./. 0|1 1|0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT ./. ./. 1|1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT 1|0 1|0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;RM_score=134;RM_repeat=(CCCCATC)N;RM_clsfam=Simple_repeat GT 1/0 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;RM_score=135;RM_repeat=(CCCCATC)N;RM_clsfam=Simple_repeat GT 0/1 ./. 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT 1|0 1|0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT 1|0 1|0 1|0 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT ./. 1|0 1|0 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT 0|1 ./. ./. -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT ./. ./. 1|1 -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT ./. 0|1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT ./. 1|0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT ./. ./. 1|1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT 1|1 1|0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT 1|1 1|0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT 1|1 1|0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT 1|0 1|0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT 1|0 1|0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT 1|0 1|0 ./. -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT 1|1 1|0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT ./. ./. 1|1 -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT ./. ./. 0|1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT 1|0 1|0 ./. -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT 1|0 ./. ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT ./. 1|0 1|0 -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT ./. ./. 1|0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT 1|0 1|0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT ./. 0|1 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT ./. ./. 1|0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT 1|0 1|0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT ./. ./. 0|1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT 1|0 1|0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT ./. ./. 1|0 -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT ./. ./. 0|1 -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT 1|0 1|0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT ./. ./. 1|1 -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT 1|0 ./. ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT 0|1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT ./. 1|0 ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT 1|0 1|0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT 0|1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT 1|0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT 1|0 1|0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT 1|0 ./. ./. -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT 0|1 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT ./. 0|1 1|1 -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT ./. ./. 0|1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT 0|1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT 1|0 1|0 ./. -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT 0|1 ./. ./. -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT ./. 0|1 1|0 -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT ./. ./. 0|1 -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT ./. ./. 0|1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT ./. 0|1 1|1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT ./. 0|1 1|1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT 0|1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT 0|1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT 1|0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT 0|1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT ./. 0|1 ./. -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT ./. 1|0 1|1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT 0|1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT ./. ./. 1|0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT ./. 1|0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT 1|0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT ./. ./. 1|0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT 1/0 ./. ./. -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT ./. ./. 0|1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT 0|1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT ./. 1|0 ./. -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT ./. 0|1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT ./. 0|1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT ./. 0|1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT 0|1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT 0|1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT ./. 0|1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT ./. ./. 1|1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT ./. 1|0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT ./. 1|0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT ./. 1|0 1|1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT ./. 1|0 ./. -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT 0|1 ./. ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT ./. ./. 1|1 -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT ./. 0|1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT ./. ./. 0|1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT ./. ./. 1|0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT 1|0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT 0|1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT ./. 1|0 1|0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT ./. 0|1 ./. -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT 1|0 ./. ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT ./. ./. 1|0 -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT ./. ./. 1|0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT ./. 1|0 1|0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT ./. ./. 1|0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT ./. 1|0 1|1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT ./. ./. 0|1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT 0|1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT ./. 1|0 1|1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT ./. 1|0 1|1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT ./. 1|0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT ./. 1|0 1|1 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT 0|1 ./. ./. -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT ./. ./. 0|1 -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT ./. 1|0 1|1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT ./. 1|0 0|1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT ./. 0|1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT ./. 1|1 1|1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT ./. 1|0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT 0|1 0|1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT 1|0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT 1|0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT 1|0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT ./. ./. 0|1 -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT 1|0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT 1|0 ./. ./. -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT ./. 1|0 ./. -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT ./. ./. 1|0 -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT ./. ./. 0|1 -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT 1|0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT ./. 0|1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT 1|0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT 1|0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT 1|0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT ./. 1|0 1|1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT 1|0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT 1|0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT 1|0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT 1|0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT 1|0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT ./. 0|1 ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT 1|0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT 1|0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT 1|0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT 1|0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT 1|0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT 1|0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT 1|0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT ./. ./. 0|1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT 1|0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT 1|0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT 1|0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT ./. 1|0 1|1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT 1|0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT ./. ./. 0|1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT 1|0 ./. ./. -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT 1|0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT 1|0 0|1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT 1|0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT ./. 1|0 0|1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT ./. ./. 1|0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT 1|0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT 1|0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT 1|0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT 1|0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT 1|0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT 1|0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT ./. 1|0 1|1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT ./. 1|0 1|1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT ./. 1|0 1|1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT ./. 1|0 1|1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT ./. 1|0 1|1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT ./. 1|0 1|1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT ./. 1|0 1|1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT ./. 1|0 1|1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT 1|0 ./. ./. -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT 0|1 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT ./. 1|0 1|1 -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT ./. 1|0 1|1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT ./. 1|0 1|1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT 1|0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT 0|1 1|0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT ./. 0|1 1|1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT ./. ./. 1|0 -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT ./. ./. 0|1 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT ./. 0|1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT 1|1 1|0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT ./. 0|1 1|1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT 1|1 1|0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT 1|1 1|0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT ./. 0|1 1|1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT 1|1 1|0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT ./. 0|1 0|1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT 0|1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT 1|0 1|0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT 1|1 1|0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT 0|1 1|0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT ./. 0|1 1|1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT 1|1 1|0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT ./. 0|1 1|1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT ./. 0|1 1|1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT ./. 1|0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT 1|1 1|0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT ./. 1|1 1|1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT 1|1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT ./. ./. 1|0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT ./. ./. 0|1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT ./. 1|1 1|1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT ./. 1|1 1|0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT ./. 1|1 1|1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT 1|0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT 1|1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT ./. ./. 1|0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT 1|1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT 1|1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT 1|0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT 0|1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT 0|1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT ./. ./. 1|0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT 0|1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT 1|0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT 0|1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT 0|1 1|0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT ./. 1|1 1|1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT 0|1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT ./. 1|1 1|1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT ./. 1|1 1|1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT ./. 1|1 0|1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT ./. ./. 1|0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT ./. 1|1 1|1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT 0|1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT ./. 1|1 1|1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT ./. 1|0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT 1|0 ./. ./. -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT 1|0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT ./. 1|0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT ./. 1|0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT ./. 1|1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT ./. 0|1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT 1|1 ./. 0|1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT ./. 1|1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT ./. 1|1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT ./. 1|1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT 1|0 1|1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT 1|0 1|0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT 0|1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT 1|1 1|1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT 1|0 ./. ./. -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT ./. 1|1 ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT 1|0 1|1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT ./. 1|1 1|0 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT 1|0 1|1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT ./. 1|1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT 1|0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT ./. 1|1 ./. -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT ./. ./. 0|1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT 0|1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT ./. 1|0 ./. -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT ./. ./. 1|0 -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT 0|1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT ./. ./. 0|1 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT 1|0 0|1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT ./. 1|0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT 1|0 1|1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT 0|1 ./. ./. -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT ./. ./. 0|1 -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT 0|1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT ./. ./. 1|0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT ./. ./. 1|0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT 1|0 1|1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT ./. 0|1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT 1|0 1|1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT ./. 0|1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT ./. ./. 1|0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT ./. ./. 1|0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT 1|0 1|1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT 1|0 1|1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT ./. 1|0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT ./. ./. 1|0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT ./. ./. 1|1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT 1|0 1|1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT ./. ./. 1|1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT 0|1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT 0|1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT ./. 0|1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT 0|1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT ./. 1|0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT 1/1 1/0 1/1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT ./. 0|1 ./. -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT 0|1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT 1|0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT ./. 0|1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT ./. 0|1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT 0|1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT 0|1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT ./. ./. 1|1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT 0|1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT 0|1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT 0|1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT 0|1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT 0|1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT 0|1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT 0|1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT 0|1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT 0|1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT 0|1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT 0|1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT 0|1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT 0|1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT 0|1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT 0|1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT 0|1 1|1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT 0|1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT ./. 1|0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT ./. ./. 0|1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT 1|0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT ./. ./. 0|1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT 1|0 ./. ./. -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT 1|0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT 1|0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT 1|0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT 1|0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT 1|0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT ./. 1|0 0|1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT 1|0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT 1|0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT ./. 1|0 0|1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT 1|0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT ./. 1|0 0|1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT 1|0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT ./. 1|0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT ./. 1|0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT ./. ./. 1|1 -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT 1|0 1|0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT 1|0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT ./. 1|0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT ./. 1|0 0|1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT ./. ./. 0|1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT 1|0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT ./. ./. 0|1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT ./. ./. 1|0 -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT 1/0 ./. ./. -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT ./. ./. 0|1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT 1|0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT ./. ./. 0|1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT ./. 1|0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT 1|0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT 1|0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT 1|0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT ./. ./. 0/1 -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT 1|0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT ./. ./. 0|1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT 1|0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT 1|0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT ./. ./. 0|1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT 0/1 ./. ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630 GT ./. 0/1 ./. -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632 GT ./. 1/0 ./. -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT ./. ./. 1|1 -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT 1|0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT ./. ./. 1|0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT 1|1 0|1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT 1|0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT ./. ./. 1/0 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT ./. 0|1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT 1/0 ./. ./. -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT ./. 1|0 ./. -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT 0/1 ./. ./. -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT ./. 1|1 ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT ./. ./. 0/1 -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT ./. ./. 0|1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT ./. ./. 1/0 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT 0|1 1|1 1|0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT 1|0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT ./. ./. 0|1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT ./. 0|1 ./. -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT ./. ./. 0|1 -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT 1|0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT 1|0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT ./. ./. 0|1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT 1|0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT ./. ./. 0|1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT ./. ./. 0|1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT 1|0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT ./. ./. 0|1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT ./. ./. 0|1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT 1|0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT 1|0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT 1|0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT 0|1 ./. ./. -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT ./. 1|0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT ./. ./. 1|1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT 0|1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT ./. ./. 0|1 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT 0|1 ./. ./. -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT 1|0 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT ./. ./. 1|0 -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT 0|1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT ./. ./. 0|1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT ./. ./. 0|1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT 0|1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT 0|1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT 0|1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT ./. 1|0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT 1|0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT ./. ./. 0|1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT 1|1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT 1|0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT ./. ./. 0|1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT ./. ./. 0|1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT ./. 1|0 0|1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT 1|1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT 0|1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT 0|1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT 1|0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT ./. 1|0 1|0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT 0|1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT 0|1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT 1|0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT ./. 1|0 1|0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT ./. 0|1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT 1|0 0|1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT ./. ./. 1|0 -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT 1|0 ./. ./. -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT ./. 0|1 ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT 1|1 0|1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT 0|1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT ./. ./. 0|1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT ./. ./. 1|0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT ./. 0|1 0|1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT ./. ./. 1|0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT ./. 0|1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT ./. ./. 0|1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT 1|0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT 1|0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT 1|0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT 1|0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT ./. ./. 1|0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT 0|1 1|1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT ./. ./. 0|1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT ./. 1|1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT 1|0 ./. 1|1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT ./. ./. 1|1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT ./. ./. 1|1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT 1|0 0|1 1|1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT 0|1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT ./. 0|1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT 0|1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT ./. ./. 1|1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT ./. ./. 1|1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT ./. ./. 1|1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT 1|0 ./. ./. -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT ./. ./. 1|1 -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT ./. ./. 1|1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT ./. ./. 1|1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT 0|1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT ./. ./. 1|1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT ./. ./. 1|1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT ./. ./. 1|1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT ./. ./. 1|1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT ./. ./. 1|1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT ./. ./. 1|1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT ./. ./. 1|1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT ./. ./. 1|1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT ./. ./. 1|1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT 0|1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT ./. ./. 1|1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT ./. ./. 0|1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT ./. ./. 1|1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT ./. ./. 1|1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT ./. ./. 1|1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT ./. ./. 1|1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT ./. ./. 1|1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT ./. ./. 1|1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT ./. ./. 1|1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT ./. ./. 1|1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT ./. ./. 1|1 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT 0|1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT ./. ./. 1|1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT ./. ./. 1|1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT 1|0 1|0 ./. -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT 0|1 0|1 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT ./. ./. 1|1 -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT ./. 1|0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT 0|1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT 0|1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT 1|1 1|1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT ./. ./. 0|1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT ./. ./. 0|1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT ./. 0|1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT 1|0 1|1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT ./. ./. 0|1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT 1|0 1|1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT ./. ./. 0|1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT 1|0 0|1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT 0|1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT ./. 1|0 0|1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT ./. 1|0 0|1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT ./. 0|1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT 1|0 0|1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT 1|0 0|1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT ./. 1|0 0|1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT ./. 1|0 0|1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT 1|0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT ./. 0|1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT ./. 1|0 0|1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT ./. 1|0 0|1 -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT 1|0 ./. ./. -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT 0|1 ./. ./. -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT ./. ./. 1|0 -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT ./. 1|0 0|1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT 0|1 ./. ./. -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT ./. 1|0 0|1 -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT ./. 1|0 0|1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT ./. 1|0 0|1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT ./. 1|0 0|1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT ./. 1|0 0|1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT 1|0 0|1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT ./. 1|0 0|1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT 0|1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT 1|0 1|1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT 1|0 1|0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT ./. ./. 0|1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT ./. 0|1 ./. -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT 1|0 1|0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT 1|0 1|0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT ./. ./. 0|1 -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT 0/1 1/0 1/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT 1/0 ./. ./. -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT ./. 0|1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT ./. ./. 0|1 -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT ./. ./. 0|1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT 1|0 0|1 1|0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT ./. ./. 0|1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT 0|1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT ./. ./. 0|1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT 1|1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT ./. 1|0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT 1|0 ./. ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT ./. 1|0 ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT ./. 1|0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT ./. 1|0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT 1|1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT ./. 1|0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT ./. 1|0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT 1|1 1|0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT ./. ./. 0|1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT ./. 1|0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT ./. 1|0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT ./. 1|0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT ./. 0|1 1|0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT ./. ./. 0|1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT ./. ./. 1|0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT ./. 0|1 1|0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT ./. 0|1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT ./. 0|1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT ./. 1|0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT ./. 1|1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT ./. 0|1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT ./. 0|1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT ./. 1|0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT ./. 0|1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT ./. 1|1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT ./. 1|1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT ./. 1|1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT ./. 1|0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT ./. 1|1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT ./. 1|1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT ./. 1|1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT ./. 1|1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT ./. 1|1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT ./. 0|1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT ./. 1|1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT ./. 0|1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT ./. 1|1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT ./. 1|1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT ./. 1|1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT ./. 0|1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT ./. 0|1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT ./. 1|0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT ./. 0|1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT ./. 0|1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT ./. 1|0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT ./. 0|1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT 0|1 1|0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT ./. 0|1 ./. -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT ./. 0|1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT ./. 0|1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT ./. ./. 1|0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT 1|0 ./. ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT ./. 1/0 ./. -chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT ./. 0/1 ./. -chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT 0/1 ./. 1/0 -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT ./. ./. 1|0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT ./. ./. 1|0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT 0|1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT 0|1 1|1 ./. -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT 0|1 1|0 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT ./. ./. 1|0 -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT 1|0 1|0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT ./. ./. 1|0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT 1|0 0|1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT ./. 0|1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT ./. ./. 0|1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT 1|1 1|0 0|1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT 1|0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT 1|0 ./. ./. -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT ./. ./. 1|0 -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT 1|0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT ./. ./. 1|0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT 1|0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT 1|0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT 0|1 ./. ./. -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT ./. 0|1 ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT ./. ./. 1|0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT ./. ./. 1|0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT ./. ./. 1|0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT ./. 0|1 ./. -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT 1|0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT ./. 0|1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT ./. ./. 1|0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT 1|0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT ./. 0|1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT ./. ./. 1|0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT 1|0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT ./. ./. 1|0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT 1|0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT ./. ./. 1|0 -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT 0|1 ./. ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT ./. 1|0 ./. -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT ./. 0|1 ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT 1|0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT 1|0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT 0|1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT ./. ./. 1|0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT ./. ./. 0|1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT 1|0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT ./. ./. 1|0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT ./. 0|1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT 1|0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT ./. ./. 1|0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT 1|0 ./. ./. -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT ./. ./. 1|0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT ./. ./. 1|0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT 1|0 0|1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT ./. 0|1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT ./. ./. 1|0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT ./. 1|0 1|1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT ./. ./. 1|0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT ./. 0|1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT 0/1 1/0 0/1 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT 1|0 0|1 ./. -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT ./. ./. 1|0 -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT ./. ./. 1|0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT ./. 1|0 ./. -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT ./. ./. 1|0 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT 0/1 ./. ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT ./. ./. 0/1 -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT 1|0 0|1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT 1|0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT ./. ./. 1|0 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT ./. ./. 1|0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT ./. ./. 1|0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT ./. ./. 1|0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT 1|0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT ./. ./. 1|0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT ./. 1|0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT 1|0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT 1|0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT ./. ./. 1|0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT 1|0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT ./. 0|1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT 1|0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT ./. ./. 1|0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT 1|0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT ./. ./. 1|0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT ./. ./. 1|0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT ./. ./. 1|0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT ./. ./. 1|0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT 1|0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT 1|0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT ./. ./. 1|0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT ./. ./. 1|0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT ./. ./. 1|0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT ./. 0|1 ./. -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT 1|0 ./. ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT ./. ./. 1|0 -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT ./. ./. 1|0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT ./. 1|0 1|0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT ./. 1|1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT ./. 1|0 1|1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT ./. ./. 1|0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT ./. 1|0 1|0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT ./. 1|0 1|0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT ./. 1|0 1|0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT ./. 1|0 1|0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT ./. 1|0 1|0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT 1|1 0|1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT 1|1 0|1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT ./. ./. 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT 1/1 0/1 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT ./. 1/0 ./. -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT ./. ./. 0|1 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT ./. 1|0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT 1|1 0|1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT ./. 1|0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT ./. 1|0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT ./. ./. 0|1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT 1|1 0|1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT ./. 1|0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT ./. 1|0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT ./. ./. 1|0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT ./. 1|0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT 1|1 0|1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT ./. ./. 1|0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT 1|1 0|1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT ./. 0|1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT ./. ./. 1|0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT 1|1 0|1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT 1|1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT ./. ./. 1|0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT 1|1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT ./. 1|0 ./. -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT ./. 0|1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT ./. ./. 1|0 -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT ./. 1|1 1|0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT ./. 1|1 ./. -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT ./. ./. 1|0 -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT ./. ./. 0|1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT 1|0 1|1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT ./. ./. 1|0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT 1|1 0|1 1|0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT 1|1 0|1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT ./. ./. 0|1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT ./. ./. 0|1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT ./. 0|1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT 0|1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT ./. 0|1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT ./. 0|1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT ./. 1|0 1|1 -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT ./. 0|1 ./. -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT ./. 1|0 1|1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT ./. 1|1 1|1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT ./. 1|1 1|1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT ./. 1|1 1|1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT ./. 0|1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT 1|0 0|1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT 0|1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT 1|1 0|1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT ./. 0|1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT ./. 0|1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT 1|1 ./. ./. -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT ./. 0|1 ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT ./. ./. 0|1 -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT ./. 1|0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT ./. ./. 0|1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT ./. 1|1 1|1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT ./. 1|1 1|1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT ./. 1|0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT ./. 0|1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT 1|1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT 1|0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT ./. 1|0 1|1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT ./. 1|0 1|1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT ./. 0|1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT 1|1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT ./. 1|0 1|1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT ./. 0|1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT 1|1 0|1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT ./. 1|0 1|1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT ./. ./. 1|0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT ./. ./. 0|1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT ./. 1|0 1|1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT ./. 1|0 1|1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT ./. 1|0 1|1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT ./. 0|1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT 1|1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT ./. 1|0 1|1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT ./. 1|0 1|1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT ./. 1|0 1|1 -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT ./. 0|1 ./. -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT ./. 1|0 1|1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT ./. 1|0 1|1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT ./. 1|0 1|1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT 1|1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT ./. 0|1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT ./. 1|1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT ./. ./. 1|0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT 0|1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT ./. 1|0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT 0|1 ./. ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT ./. 1|0 1|1 -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT ./. 0|1 ./. -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT ./. 0|1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT ./. 1|0 1|1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT ./. 1|0 0|1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT ./. 1|0 1|1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT ./. 1|0 1|1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT ./. ./. 1|0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT ./. 1|0 1|1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT ./. ./. 1|0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT ./. ./. 1|0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT 0|1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT ./. 1|0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT ./. ./. 0|1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT ./. 1|0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT ./. ./. 0|1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT 0|1 1|1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT 0|1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT ./. 0|1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT 1|0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT 1|0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT 1|1 0|1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT 0|1 0|1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT 0|1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT 1|0 ./. ./. -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT 0|1 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT ./. 1|0 1|1 -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT ./. 1|0 1|1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT ./. 1|0 1|1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT 1|0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT 1|0 ./. ./. -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT 0/1 1/0 1/1 -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT 1|0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT 1|0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT 1|0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT ./. 1|0 1|1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT 1|0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT 1|0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT 1|0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT 1|0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT 1|0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT 1|0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT 1|0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT 1|0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT 1|0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT 1|0 1|0 1|1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT 1|0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT 1|0 ./. ./. -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT ./. 1|0 0|1 -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT ./. ./. 1|0 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT 1|0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT 1|0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT 1|0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT 1|1 1|0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT ./. 0|1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT 0|1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT 0|1 0|1 1|0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT ./. 1|1 1|1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT ./. 1|1 1|1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT 1|0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT ./. 1|1 1|1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT ./. 1|1 1|1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT ./. 1|1 1|1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT ./. 1|1 1|1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT ./. 1|1 1|1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT ./. 1|1 1|1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT 1|1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT 1|0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT ./. 1|1 1|1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT ./. 1|1 1|1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT ./. 1|1 1|1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT ./. 1|1 1|1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT ./. 1|1 1|1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT ./. ./. 0|1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT ./. 1|1 1|1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT ./. ./. 0|1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT ./. 1|1 1|1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT ./. ./. 0|1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT ./. 1|1 1|1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT ./. ./. 1|0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT ./. 1|1 1|1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT ./. 1|1 1|1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT ./. 1|1 1|1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT ./. ./. 0|1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT ./. 1|1 1|1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT ./. 1|1 1|1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT ./. ./. 0|1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT ./. 1|1 1|1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT ./. ./. 0|1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT ./. 1|1 1|0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT ./. ./. 0|1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT ./. 1|1 1|1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT ./. 1|1 1|1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT 1|1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT ./. 1|0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT 1|1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT 1|1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT 1|1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT 1|1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT 1|1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT ./. 1|1 1|1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT ./. ./. 0|1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT 1|1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT 1|1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT ./. 1|1 1|1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT ./. 1|1 0|1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT ./. ./. 0|1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT ./. ./. 0|1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT ./. 1|1 0|1 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT ./. 1|1 0|1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT ./. 1|1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT ./. ./. 0|1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT 1|0 1|1 1|0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT 0|1 ./. ./. -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT ./. ./. 0|1 -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT ./. ./. 0|1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT ./. 1|0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT 0|1 0|1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT ./. 1|0 0|1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT ./. 1|1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT ./. 1|1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT 1|0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT ./. ./. 0|1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT ./. ./. 0|1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT ./. ./. 0|1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT 1|0 ./. 1|0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT ./. ./. 0|1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT ./. ./. 1|0 -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT 1|0 ./. ./. -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT 0|1 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT ./. ./. 0|1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT ./. ./. 0|1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT ./. 1|1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT ./. ./. 0|1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT ./. 1|1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT 0|1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT ./. 0|1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT 0|1 ./. ./. -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT ./. 1|1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT ./. ./. 0|1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT ./. 1|1 0|1 -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT ./. 1|1 ./. -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT ./. ./. 0|1 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT ./. ./. 0|1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT ./. 1|1 0|1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT ./. ./. 0|1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT ./. 1|1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT ./. ./. 1|0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT ./. 1|1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT ./. ./. 0|1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT ./. 1|1 0|1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT ./. ./. 0|1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT ./. 1|1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT ./. 1|1 0|1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT 1|0 ./. ./. -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT ./. 1|1 0|1 -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT ./. 1|1 0|1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT ./. 1|1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT ./. 1|1 0|1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT ./. 0|1 1|1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT ./. 1|1 0|1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT ./. 1|1 0|1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT ./. ./. 0|1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT ./. 1|1 0|1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT ./. 1|0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT ./. 1|0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT ./. ./. 1|0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT ./. 1|1 0|1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT ./. ./. 0|1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT 1|1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT ./. ./. 1|0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT ./. ./. 0|1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT ./. 1|1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT ./. 1|1 0|1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT ./. ./. 0|1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT ./. ./. 0|1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT ./. 0|1 0|1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT ./. ./. 0|1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT ./. ./. 0|1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT ./. ./. 0|1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT ./. ./. 0|1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT 1|0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT 1|0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT ./. ./. 0|1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT ./. 0|1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT ./. ./. 0|1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT ./. 0|1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT ./. 1|0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT ./. 0|1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT ./. 0|1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT 1|1 0|1 0|1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT ./. 0|1 ./. -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT ./. ./. 0|1 -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT 0|1 ./. ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT ./. 1|0 1|0 -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT ./. 0|1 ./. -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT ./. 0|1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT ./. 0|1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT ./. 0|1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT ./. 1|0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT ./. 0|1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT ./. 0|1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT ./. 0|1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT 1|1 ./. 1|1 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT 1|0 1|1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT 0|1 ./. 1|1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT 0|1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT 1|0 0|1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT ./. 0|1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT 1|0 0|1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT 0|1 1|0 1|0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT ./. ./. 0|1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT ./. 0|1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT 1|0 0|1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT ./. ./. 0|1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT 1|0 0|1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT ./. 1|0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT ./. ./. 0|1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT ./. 0|1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT 1|0 1|1 0|1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT 1|0 0|1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT 1|0 0|1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT 0|1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT 1|0 1|1 1|1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT 0|1 1|0 1|1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT 1|0 0|1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT ./. 1|0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT 1|0 0|1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT ./. ./. 0|1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT ./. ./. 1|0 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT ./. ./. 0|1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT ./. ./. 0|1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT ./. 1|0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT 1|0 0|1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT ./. ./. 0|1 -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT 1|0 ./. ./. -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT ./. 1|0 ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT ./. ./. 0|1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT ./. ./. 0|1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT ./. ./. 0|1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT ./. ./. 0|1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT ./. ./. 0|1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT ./. ./. 0|1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT 1|0 0|1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT ./. ./. 0|1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT ./. 1|0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT ./. ./. 0|1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT 1|0 0|1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT ./. ./. 0|1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT ./. ./. 0|1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT ./. ./. 0|1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT ./. ./. 0|1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT 1|0 0|1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT ./. ./. 0|1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT 1|0 0|1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT 1|0 0|1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT 0|1 1|0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT ./. ./. 0|1 -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT ./. ./. 0|1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT 1|0 0|1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT ./. ./. 1|0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT 1|0 0|1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT 1|0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT 1|0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT 1|0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT ./. ./. 0|1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT 1|0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT 1|0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT 1|0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT ./. 1|0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT 1|0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT 1|0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT 1|0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT ./. 1|0 ./. -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT 1|0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT 1|0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT 1|0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT 1|0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT 1|0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT ./. 1|0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT ./. 1|0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT ./. 1|0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT 1|1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT ./. 1|0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT 0|1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT 0|1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT 0|1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT 0|1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT 0|1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT 0|1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT 0|1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT 0|1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT 0|1 0|1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT 0|1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT 0|1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT 0|1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT 0|1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT 0|1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT 0|1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT 0|1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT 0|1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT 0|1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT 0|1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT 0|1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT 0|1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT 0|1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT 0|1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT 0|1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT 0|1 ./. 0|1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT ./. ./. 0|1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT ./. 0|1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT ./. ./. 0|1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT 1|0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT ./. ./. 0|1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT ./. 0|1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT 1|0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT 1|0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT 1|0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT 1|0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT 1|0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT 1|0 1|0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT ./. 1|0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT 1|1 1|1 1|0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT 1|0 1|0 0|1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT 1|0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT 1|1 1|0 1|0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT 0|1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT ./. 0|1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT ./. 0|1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT ./. 0|1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT 0|1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT ./. 0|1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT ./. 0|1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT ./. 0|1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT ./. ./. 0|1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT ./. 0|1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT ./. 1|0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT ./. 1|0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT 1|0 1|0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT 1|0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT 0|1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT 0|1 1|0 0|1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT ./. 0|1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT ./. 0|1 0|1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT ./. 0|1 0|1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT ./. ./. 0|1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT ./. ./. 0|1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT ./. 0|1 0|1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT 0|1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT ./. 0|1 0|1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT ./. 0|1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT ./. 0|1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT ./. 1|0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT ./. 0|1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT ./. 1|1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT ./. 1|1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT ./. 1|1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT ./. 1|1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT ./. 1|1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT ./. 1|1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT ./. 1|1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT ./. 1|1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT ./. 1|1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT ./. 1|1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT ./. 1|1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT ./. 1|1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT ./. 1|1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT ./. 1|1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT 0|1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT ./. 1|1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT ./. 1|1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT ./. ./. 0|1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT ./. 1|0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT ./. 1|0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT ./. 1|0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT ./. 1|0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT ./. 1|0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT ./. 1|0 ./. -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT ./. 1|1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT ./. 1|1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT ./. 0|1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT ./. 1|1 0|1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT 0|1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT 0|1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT ./. 1|1 0|1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT ./. 1|1 0|1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT 0|1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT ./. 1|1 0|1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT 0|1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT ./. ./. 1|0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT ./. ./. 1|0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT ./. ./. 1|0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT ./. 0|1 0|1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT 0|1 0|1 0|1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT 1|0 0|1 0|1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103;RM_score=64;RM_repeat=L2A;RM_clsfam=LINE/L2 GT 0/1 ./. 1/0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT ./. 0|1 0|1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT 1|0 ./. ./. -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT 0|1 ./. ./. -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT ./. 1|0 1|0 -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT ./. 0|1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT ./. ./. 0|1 -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT 0|1 ./. 1|0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT 1|1 0|1 1|1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT 1|0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT 1|0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT 1|0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT 1|0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT 1|0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT 0|1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT ./. 0|1 1|1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT 1|0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT 1|0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT 1|0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT 0|1 0|1 1|1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT 1|0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT 1|0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT 1|0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT 1|0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT 1|0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT 0|1 1|1 1|1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT 1|0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT 1|0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT 1|0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT 1|0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT 1|0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT 0|1 1|1 0|1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT ./. ./. 0|1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT 1|0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT 1|0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT 1|0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT 1|0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT ./. 1|0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT 1|0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT 1|0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT 1|0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT 1|1 1|1 0|1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT 1|0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT 1|0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT 1|0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT 1|0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT 1|0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT 1|0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT 1|0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT ./. ./. 0|1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT 1|0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT 1|0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT 1|0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT 1|0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT 1|0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT 1|0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT 1|0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT 1|0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT 1|0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT 1|0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT 1|1 1|1 1|1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT 1|0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT 1|0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT 1|0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT 1|0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT 1|0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT 1|0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT 1|0 ./. ./. -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT 1|0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT 1|0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT 1|0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT 1|0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT 1|0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT 1|0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT 1|0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT 1|0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT ./. ./. 1|0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT ./. 1|1 0|1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT 1|0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT 1|0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT 1|0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT 1|0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT 1|0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT 1|0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT 1|0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT ./. ./. 0|1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT 1|0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT 1|0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT 1|0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT ./. ./. 0|1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT 1|0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT 0|1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT 0|1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT 1|1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT 1|1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT 0|1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT 1|1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT 1|1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT 1|1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT ./. ./. 1|0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT 1|1 ./. ./. -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT ./. 1|0 1|0 -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT 1|1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT 0|1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT 1|1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT 1|0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT 1|1 ./. 1|0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT 1|0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT 1|0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT 1|0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT ./. ./. 0|1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT 1|0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT 1|0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT 1|0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT 0|1 1|0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT 1|0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT 1|0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT 1|0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT 1|0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT 1|0 ./. 0|1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT 1|0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT 1|0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT 1|0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT ./. 0|1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT ./. ./. 1|1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT 1|0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT ./. ./. 1|0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT 1|0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT 1|0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT 1|0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT 1|0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT 1|0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT 1|0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT 1|0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT 1|0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT 1|0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT 1|0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT 1|1 1|0 1|1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT 1|0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT 1|0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT ./. ./. 0|1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT 1|0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT 1|0 ./. ./. +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=- GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=- GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=- GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+ GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+ GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=- GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=- GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=- GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=- GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=- GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+ GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+ GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+ GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+ GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+ GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=- GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=- GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=- GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=- GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=- GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+ GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=- GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=- GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+ GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+ GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=- GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+ GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+ GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+ GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=- GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+ GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+ GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=- GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=- GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+ GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+ GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=- GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=- GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=- GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+ GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+ GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+ GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+ GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=- GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+ GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+ GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=- GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=- GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=- GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+ GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=- GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+ GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+ GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=- GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=- GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+ GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+ GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+ GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=- GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+ GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=- GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=- GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=- GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+ GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=- GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+ GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=- GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=- GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=- GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=- GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=- GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=- GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=- GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=- GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=- GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=- GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=- GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=- GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=- GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=- GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=- GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=- GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=- GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=- GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=- GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=- GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=- GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=- GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=- GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=- GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=- GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+ GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=- GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69 GT:DP:AD 1/1:35:19,16 ./.:31:21,10 1/0:17:8,9 +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69 GT:DP:AD ./.:36:13,23 1/1:14:7,7 ./.:40:19,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=- GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=- GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=- GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+ GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=- GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+ GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+ GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+ GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+ GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+ GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=- GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+ GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+ GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+ GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+ GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+ GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+ GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+ GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+ GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=- GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+ GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+ GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+ GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+ GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+ GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+ GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+ GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+ GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+ GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+ GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+ GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+ GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+ GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+ GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+ GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+ GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+ GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+ GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+ GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+ GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+ GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+ GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+ GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+ GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+ GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+ GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+ GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+ GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+ GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+ GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+ GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+ GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+ GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+ GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+ GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+ GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+ GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+ GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+ GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=- GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+ GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+ GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+ GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=- GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+ GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=- GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=- GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+ GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=- GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=- GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+ GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+ GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+ GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=- GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+ GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+ GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+ GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+ GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+ GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+ GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+ GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=- GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=- GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=- GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+ GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+ GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+ GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+ GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=- GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=- GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=- GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+ GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=- GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+ GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=- GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+ GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=- GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+ GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+ GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=- GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+ GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+ GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+ GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+ GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+ GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+ GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+ GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+ GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+ GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=- GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+ GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=- GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=- GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=- GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+ GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+ GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=- GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=- GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+ GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=- GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+ GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+ GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+ GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+ GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=- GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=- GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=- GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=- GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=- GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=- GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+ GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+ GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+ GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=- GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=- GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+ GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=- GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=- GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=- GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+ GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+ GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=- GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+ GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=- GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+ GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=- GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=- GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=- GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+ GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+ GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=- GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+ GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=- GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=- GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+ GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+ GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=- GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=- GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=- GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+ GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+ GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+ GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=- GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=- GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+ GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+ GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=- GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+ GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=- GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+ GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+ GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+ GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=- GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+ GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=- GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=- GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+ GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=- GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+ GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+ GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+ GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+ GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=- GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+ GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+ GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+ GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=- GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+ GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=- GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=- GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+ GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+ GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+ GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+ GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+ GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+ GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=- GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+ GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=- GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=- GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+ GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=- GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=- GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+ GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+ GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+ GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=- GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=- GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=- GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=- GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=- GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=- GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+ GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=- GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+ GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+ GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+ GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+ GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+ GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=- GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+ GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+ GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+ GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+ GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+ GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+ GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+ GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+ GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+ GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+ GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+ GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=- GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+ GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+ GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+ GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+ GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+ GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+ GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+ GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+ GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+ GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+ GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+ GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+ GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=- GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+ GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+ GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+ GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+ GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+ GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+ GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+ GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+ GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+ GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+ GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+ GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+ GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+ GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+ GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+ GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+ GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+ GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+ GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+ GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+ GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+ GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+ GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+ GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+ GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+ GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=- GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+ GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+ GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+ GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+ GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+ GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+ GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+ GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+ GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+ GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+ GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+ GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+ GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+ GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+ GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+ GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+ GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+ GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=- GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=- GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=- GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=- GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=- GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=- GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=- GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=- GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=- GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=- GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=- GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+ GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=- GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+ GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+ GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+ GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+ GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+ GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+ GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+ GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+ GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+ GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+ GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+ GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+ GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+ GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=- GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188 GT:DP:AD ./.:19:11,8 ./.:33:12,21 0/1:36:12,24 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+ GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139;RM_score=97;RM_repeat=(GGGA)N;RM_clsfam=Simple_repeat GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438;RM_score=300;RM_repeat=(AGGG)N;RM_clsfam=Simple_repeat GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514;RM_score=360;RM_repeat=(AGGG)N;RM_clsfam=Simple_repeat GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179;RM_score=117;RM_repeat=(GGGA)N;RM_clsfam=Simple_repeat GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=- GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+ GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=- GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=-64 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=- GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=- GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+ GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+ GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+ GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+ GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=- GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+ GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+ GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+ GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+ GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+ GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+ GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=- GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=- GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=- GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+ GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+ GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+ GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+ GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+ GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+ GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+ GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+ GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+ GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+ GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+ GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+ GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+ GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=- GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+ GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+ GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+ GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+ GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+ GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+ GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=- GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+ GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+ GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+ GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+ GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+ GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+ GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+ GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+ GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+ GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;RM_score=129;RM_repeat=ALUJO;RM_clsfam=SINE/Alu GT:DP:AD 1/1:34:18,16 ./.:32:19,13 1/1:25:13,12 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;RM_score=122;RM_repeat=ALUJR;RM_clsfam=SINE/Alu GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=- GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+ GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=- GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=- GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=- GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+ GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+ GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+ GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=- GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+ GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+ GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+ GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=- GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+ GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+ GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=- GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+ GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+ GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+ GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+ GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+ GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+ GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+ GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+ GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+ GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+ GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+ GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+ GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+ GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+ GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+ GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+ GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=- GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+ GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+ GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+ GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+ GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+ GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=- GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+ GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=- GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+ GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+ GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=- GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=- GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+ GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=- GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+ GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=- GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=- GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+ GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=- GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+ GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+ GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+ GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+ GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=- GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=- GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+ GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+ GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+ GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+ GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+ GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+ GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=- GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+ GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+ GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+ GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+ GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+ GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=- GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+ GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+ GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+ GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+ GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+ GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=- GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+ GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+ GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=- GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+ GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+ GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+ GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+ GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+ GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+ GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+ GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+ GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+ GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+ GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+ GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+ GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+ GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+ GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+ GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+ GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+ GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+ GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+ GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=- GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+ GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=- GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=- GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=- GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=- GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=- GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=- GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+ GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+ GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+ GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+ GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=- GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=- GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=- GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+ GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+ GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+ GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+ GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+ GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+ GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+ GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+ GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+ GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=- GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=- GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=- GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+ GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+ GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+ GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+ GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+ GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=- GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=- GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+ GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=- GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+ GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+ GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+ GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=- GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+ GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+ GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+ GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+ GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+ GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+ GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+ GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+ GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+ GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=- GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+ GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+ GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+ GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+ GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=- GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+ GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+ GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+ GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+ GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+ GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=- GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=- GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+ GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+ GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+ GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+ GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+ GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=- GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=- GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=- GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=- GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+ GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=- GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=- GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=- GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+ GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=- GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=- GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=- GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=- GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=- GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=- GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+ GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=- GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=- GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=- GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=- GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=- GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+ GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=- GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=- GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+ GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=- GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+ GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+ GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+ GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=- GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=- GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+ GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=- GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+ GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+ GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+ GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+ GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+ GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+ GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+ GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+ GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+ GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+ GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+ GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+ GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+ GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+ GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+ GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+ GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+ GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=- GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+ GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+ GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=- GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+ GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+ GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+ GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+ GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+ GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+ GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+ GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=- GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=- GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+ GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+ GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+ GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+ GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+ GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+ GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=- GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+ GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+ GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+ GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+ GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+ GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+ GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+ GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+ GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+ GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+ GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+ GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+ GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+ GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+ GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+ GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+ GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+ GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=- GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+ GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+ GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+ GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+ GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+ GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+ GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+ GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=- GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=- GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+ GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+ GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+ GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+ GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+ GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+ GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+ GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+ GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+ GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+ GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+ GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+ GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+ GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+ GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+ GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+ GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+ GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+ GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+ GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+ GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=- GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+ GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+ GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+ GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+ GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+ GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+ GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+ GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+ GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+ GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+ GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;RM_score=134;RM_repeat=(CCCCATC)N;RM_clsfam=Simple_repeat GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;RM_score=135;RM_repeat=(CCCCATC)N;RM_clsfam=Simple_repeat GT:DP:AD 0/1:27:19,8 ./.:40:20,20 1/1:23:7,16 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+ GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+ GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+ GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+ GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+ GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+ GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+ GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+ GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+ GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+ GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=- GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+ GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=- GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+ GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+ GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+ GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+ GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+ GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+ GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+ GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+ GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+ GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+ GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+ GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+ GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+ GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+ GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=- GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+ GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+ GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+ GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+ GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+ GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+ GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+ GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=- GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+ GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+ GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=- GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+ GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+ GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+ GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+ GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+ GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+ GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+ GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+ GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+ GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+ GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+ GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+ GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+ GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+ GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+ GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+ GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+ GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+ GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+ GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+ GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+ GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+ GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+ GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+ GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+ GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+ GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=- GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=- GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+ GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+ GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+ GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+ GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+ GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+ GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+ GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=- GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+ GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=- GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+ GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=- GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+ GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=- GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+ GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+ GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+ GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+ GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=- GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=- GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+ GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+ GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=- GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=- GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+ GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+ GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=- GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=- GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+ GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=- GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=- GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=- GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=- GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+ GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+ GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+ GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=- GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+ GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=- GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+ GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+ GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+ GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+ GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+ GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+ GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=- GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+ GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+ GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+ GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+ GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+ GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+ GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+ GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+ GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+ GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+ GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+ GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+ GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+ GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+ GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=- GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=- GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+ GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+ GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+ GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=- GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+ GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=- GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=- GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+ GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+ GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=- GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=- GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=- GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=- GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=- GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+ GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+ GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=- GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=- GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=- GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+ GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+ GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+ GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+ GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+ GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+ GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=- GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+ GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+ GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+ GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+ GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+ GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+ GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+ GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+ GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+ GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+ GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+ GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+ GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+ GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+ GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+ GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+ GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+ GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+ GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+ GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+ GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+ GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+ GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+ GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+ GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+ GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+ GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=- GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+ GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=- GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=- GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=- GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=- GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+ GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=- GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+ GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+ GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+ GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+ GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+ GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=- GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+ GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=- GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=- GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=- GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=- GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+ GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+ GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+ GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=- GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+ GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=- GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=- GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+ GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+ GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=- GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=- GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=- GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+ GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+ GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+ GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+ GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+ GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+ GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+ GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=- GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+ GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+ GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+ GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+ GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+ GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+ GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+ GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+ GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+ GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+ GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+ GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+ GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+ GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+ GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+ GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+ GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+ GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+ GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+ GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=- GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+ GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+ GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=- GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=- GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+ GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+ GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+ GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+ GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+ GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+ GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=- GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=- GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+ GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+ GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+ GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+ GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+ GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=- GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=- GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+ GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+ GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+ GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+ GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+ GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=- GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+ GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=- GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+ GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+ GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+ GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+ GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+ GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+ GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+ GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+ GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+ GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+ GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+ GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+ GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+ GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+ GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+ GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=- GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+ GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+ GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=-54 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+ GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+ GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+ GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+ GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+ GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=- GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+ GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+ GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+ GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+ GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+ GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+ GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+ GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+ GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+ GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+ GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+ GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+ GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+ GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+ GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+ GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+ GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+ GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+ GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+ GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+ GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+ GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+ GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+ GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+ GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+ GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+ GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+ GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+ GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+ GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=- GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+ GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+ GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=- GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+ GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+ GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+ GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+ GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+ GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+ GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+ GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+ GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+ GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=- GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+ GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+ GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=- GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+ GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=- GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=- GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=- GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+ GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+ GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+ GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=- GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=- GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+ GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=- GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=- GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=- GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=- GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+ GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+ GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=- GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+ GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+ GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=- GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+ GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+ GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+ GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+ GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+ GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+ GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+ GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=- GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+ GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+ GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=- GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+ GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=- GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+ GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=- GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=- GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+ GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=- GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=- GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+ GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+ GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+ GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+ GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+ GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+ GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+ GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=- GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+ GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+ GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=- GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+ GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+ GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+ GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+ GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+ GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+ GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+ GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+ GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+ GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+ GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+ GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=- GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+ GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+ GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=- GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+ GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+ GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+ GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+ GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+ GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+ GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+ GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+ GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=- GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+ GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=- GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+ GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=- GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+ GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+ GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+ GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+ GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+ GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=- GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=- GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+ GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+ GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=- GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+ GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+ GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+ GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+ GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+ GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+ GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+ GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+ GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+ GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+ GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+ GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+ GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+ GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=- GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+ GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+ GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+ GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+ GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=- GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=- GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+ GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=- GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=- GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+ GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+ GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+ GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+ GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+ GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=- GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=- GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+ GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=- GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+ GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=- GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+ GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+ GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+ GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=- GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=- GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=- GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=- GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=- GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=- GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=- GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=- GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+ GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=- GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=- GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+ GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=- GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=- GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=- GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+ GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+ GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=- GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=- GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+ GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+ GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+ GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+ GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=- GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=- GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+ GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+ GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+ GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+ GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+ GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+ GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+ GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=- GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+ GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=- GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+ GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+ GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+ GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+ GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+ GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+ GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=- GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+ GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=- GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+ GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+ GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+ GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+ GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+ GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+ GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+ GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=- GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=- GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+ GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+ GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+ GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=- GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=- GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+ GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=- GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=- GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+ GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=- GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=- GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=- GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=- GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+ GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+ GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+ GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+ GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+ GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+ GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+ GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+ GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+ GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+ GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+ GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=- GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=-93 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+ GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=- GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+ GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+ GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=- GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+ GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=- GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+ GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+ GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+ GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+ GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=- GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+ GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=- GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=- GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=- GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+ GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=- GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=- GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=- GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=- GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+ GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+ GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+ GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+ GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=- GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+ GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+ GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+ GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=- GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+ GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=- GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+ GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+ GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+ GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+ GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=- GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=- GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=- GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=- GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=- GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=- GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=- GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+ GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=- GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+ GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=- GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=- GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+ GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+ GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+ GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+ GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+ GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+ GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=- GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+ GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+ GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+ GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+ GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+ GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+ GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+ GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+ GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+ GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+ GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+ GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+ GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+ GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+ GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=- GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=25033867;QSTRAND=-;SVTYPE=DEL;SVLEN=-32 GT:DP:AD ./.:15:10,5 1/0:29:9,20 ./.:30:15,15 +chr20 727508 . TATATCTAATATATATAATATCTAATATATATAATATCTAATATATATA T 60 . QNAME=cluster19_000000F;QSTART=688369;QSTRAND=+;SVTYPE=DEL;SVLEN=-48 GT:DP:AD ./.:38:18,20 0/1:34:22,12 ./.:28:13,15 +chr20 727556 . AATATCTAATATATATAATATCTAATATATATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682489;QSTRAND=+;SVTYPE=DEL;SVLEN=-34 GT:DP:AD 0/1:26:8,18 ./.:41:17,24 1/0:30:17,13 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=- GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+ GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+ GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+ GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+ GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+ GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+ GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=- GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+ GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+ GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+ GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+ GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+ GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+ GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+ GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+ GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+ GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+ GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+ GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+ GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+ GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+ GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+ GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+ GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+ GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+ GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+ GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+ GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=- GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+ GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+ GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+ GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+ GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+ GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+ GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=- GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+ GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+ GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=- GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=- GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+ GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+ GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+ GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+ GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+ GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+ GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+ GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+ GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+ GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+ GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+ GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+ GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+ GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+ GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=- GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+ GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+ GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+ GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=- GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+ GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=- GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+ GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+ GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+ GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+ GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=- GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+ GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=- GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+ GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+ GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+ GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=- GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+ GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+ GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+ GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=- GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+ GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+ GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+ GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+ GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+ GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+ GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=- GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+ GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+ GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+ GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+ GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+ GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=- GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+ GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+ GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+ GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+ GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+ GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=- GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=- GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+ GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+ GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+ GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+ GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+ GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+ GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+ GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+ GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=- GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+ GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+ GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+ GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+ GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+ GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=- GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+ GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+ GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+ GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+ GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+ GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=- GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+ GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+ GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=- GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=- GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=- GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+ GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+ GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=- GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+ GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+ GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=- GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+ GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+ GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=- GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+ GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+ GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+ GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=- GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+ GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=- GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+ GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=- GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+ GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+ GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+ GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=- GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+ GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=- GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+ GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=- GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+ GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+ GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+ GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+ GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+ GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+ GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+ GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+ GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=- GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=- GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+ GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=- GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=- GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+ GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=- GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=- GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=- GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+ GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+ GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+ GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+ GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+ GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:DP:AD ./.:30:19,11 ./.:35:14,21 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=- GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=- GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+ GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+ GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=- GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+ GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+ GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=- GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+ GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=- GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+ GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=- GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+ GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=- GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=- GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+ GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=- GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+ GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=- GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+ GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+ GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=- GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+ GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+ GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=- GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=- GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+ GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=- GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+ GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=- GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=- GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=- GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+ GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=- GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+ GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+ GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+ GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=- GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=- GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+ GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+ GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+ GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+ GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+ GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+ GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+ GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=- GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=- GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+ GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=- GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+ GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+ GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+ GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+ GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+ GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+ GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+ GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+ GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+ GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+ GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=- GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=- GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=- GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=- GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+ GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+ GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+ GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+ GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+ GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+ GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+ GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+ GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+ GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+ GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+ GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=- GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+ GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+ GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+ GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+ GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+ GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+ GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+ GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+ GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+ GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+ GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+ GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+ GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+ GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+ GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+ GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=- GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+ GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+ GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+ GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+ GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+ GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+ GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=- GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+ GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+ GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=- GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+ GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+ GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=- GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+ GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=- GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=- GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+ GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+ GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+ GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+ GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=- GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=- GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=- GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+ GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+ GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+ GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=- GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=- GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=- GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+ GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+ GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+ GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+ GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+ GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+ GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=- GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=- GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+ GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=- GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+ GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+ GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=- GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=- GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=- GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=- GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=- GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+ GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=- GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+ GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=- GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=- GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+ GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+ GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+ GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+ GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+ GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+ GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+ GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+ GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+ GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+ GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+ GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+ GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+ GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=- GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=- GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+ GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=- GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+ GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+ GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+ GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+ GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=- GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+ GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+ GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+ GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+ GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+ GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+ GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+ GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+ GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=- GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=- GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+ GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+ GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+ GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+ GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+ GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+ GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+ GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+ GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=- GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+ GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=- GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+ GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+ GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=- GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=- GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=- GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=- GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=- GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+ GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=- GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+ GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=- GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=- GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=- GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=- GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=- GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+ GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+ GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=- GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=- GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=- GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=- GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=- GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=- GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=- GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=- GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=- GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=- GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=- GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+ GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=- GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=- GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=- GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=- GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+ GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=- GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+ GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+ GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+ GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+ GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+ GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+ GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+ GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+ GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+ GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=- GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=- GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+ GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+ GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=- GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+ GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=- GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+ GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=- GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+ GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=- GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+ GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=- GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=- GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+ GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=- GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+ GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+ GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+ GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=- GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=- GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+ GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+ GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=- GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+ GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+ GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=- GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=- GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+ GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=- GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+ GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=- GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+ GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+ GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=- GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=- GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+ GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+ GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+ GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+ GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=- GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=- GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=- GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=- GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+ GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=- GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+ GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+ GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+ GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+ GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=- GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+ GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+ GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=- GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=- GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+ GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=- GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=- GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+ GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+ GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+ GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+ GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+ GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+ GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+ GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+ GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+ GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=- GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+ GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=- GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=- GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+ GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=- GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+ GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+ GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+ GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=- GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=- GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+ GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=- GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=- GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=- GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+ GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=- GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+ GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=- GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=- GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=- GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+ GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=- GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=- GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=- GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=- GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+ GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=- GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+ GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=- GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=- GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=- GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+ GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=- GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=- GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=- GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=- GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=- GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=- GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+ GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=- GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=- GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=- GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+ GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+ GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=- GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+ GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=- GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+ GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+ GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+ GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+ GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+ GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=- GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+ GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+ GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+ GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+ GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+ GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+ GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+ GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+ GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=- GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+ GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+ GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+ GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+ GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+ GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+ GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+ GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+ GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+ GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+ GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+ GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+ GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=- GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+ GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+ GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+ GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+ GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+ GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+ GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+ GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=- GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+ GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+ GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+ GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+ GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+ GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+ GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+ GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+ GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+ GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+ GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+ GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+ GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+ GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+ GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+ GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+ GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+ GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+ GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+ GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+ GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+ GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+ GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+ GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+ GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+ GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+ GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+ GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+ GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+ GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+ GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+ GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=- GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+ GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+ GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+ GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+ GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+ GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+ GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+ GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+ GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+ GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+ GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=- GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+ GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+ GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+ GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+ GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+ GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+ GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+ GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=- GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=- GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+ GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+ GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+ GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+ GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+ GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+ GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+ GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+ GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+ GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+ GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+ GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+ GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+ GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+ GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+ GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+ GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+ GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+ GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+ GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+ GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+ GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+ GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=- GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+ GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+ GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+ GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+ GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+ GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+ GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=- GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+ GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+ GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=- GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+ GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=- GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+ GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+ GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=- GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+ GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=- GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=- GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+ GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=- GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=- GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=- GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=- GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+ GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+ GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+ GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+ GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+ GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+ GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=- GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=- GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=- GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+ GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=- GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+ GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=- GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+ GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+ GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=- GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+ GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=- GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+ GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+ GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+ GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+ GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+ GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=- GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+ GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+ GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+ GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+ GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+ GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=- GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=- GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+ GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+ GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+ GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=- GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+ GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+ GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+ GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+ GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=- GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+ GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+ GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=- GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+ GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+ GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=- GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+ GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+ GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+ GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+ GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=- GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=- GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=- GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+ GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=- GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+ GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+ GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+ GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+ GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+ GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+ GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+ GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+ GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+ GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+ GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+ GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+ GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+ GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+ GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+ GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+ GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+ GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+ GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+ GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+ GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+ GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+ GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+ GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+ GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+ GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=- GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+ GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=- GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+ GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=- GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+ GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+ GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+ GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+ GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+ GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=- GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+ GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+ GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+ GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+ GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+ GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+ GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+ GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+ GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+ GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+ GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+ GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+ GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+ GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+ GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+ GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+ GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+ GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=- GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=- GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=- GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+ GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+ GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+ GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+ GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+ GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+ GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+ GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+ GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+ GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+ GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+ GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+ GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+ GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=- GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=- GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+ GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+ GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+ GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+ GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+ GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+ GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=- GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+ GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=- GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=- GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=- GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=- GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=- GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=- GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=- GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=- GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=- GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=- GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=- GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=- GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=- GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+ GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=- GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=- GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=- GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=- GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=- GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=- GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=- GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=- GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=- GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=- GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+ GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+ GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+ GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+ GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=- GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+ GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+ GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=- GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=- GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+ GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+ GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=- GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+ GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=- GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=- GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=- GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+ GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+ GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+ GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+ GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+ GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+ GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+ GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+ GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+ GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+ GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+ GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+ GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+ GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+ GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+ GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+ GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+ GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+ GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+ GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=-103;RM_score=64;RM_repeat=L2A;RM_clsfam=LINE/L2 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+ GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+ GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+ GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+ GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+ GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+ GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+ GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=- GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+ GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=- GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+ GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+ GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+ GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+ GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+ GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+ GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+ GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+ GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+ GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+ GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+ GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+ GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+ GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+ GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+ GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+ GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+ GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+ GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+ GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+ GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+ GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+ GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+ GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+ GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+ GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+ GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+ GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+ GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+ GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+ GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+ GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+ GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+ GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=- GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+ GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+ GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+ GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+ GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+ GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+ GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+ GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=- GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+ GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+ GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+ GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+ GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+ GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+ GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+ GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+ GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+ GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+ GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=- GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+ GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+ GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+ GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+ GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+ GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+ GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+ GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+ GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+ GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+ GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+ GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+ GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+ GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+ GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+ GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+ GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+ GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+ GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+ GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+ GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+ GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+ GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+ GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=- GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=- GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+ GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+ GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+ GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+ GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+ GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+ GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=- GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+ GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+ GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=- GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+ GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+ GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+ GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+ GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+ GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+ GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+ GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+ GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+ GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=- GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+ GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=- GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+ GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+ GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+ GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+ GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+ GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+ GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+ GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+ GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=- GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+ GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+ GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+ GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+ GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+ GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+ GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+ GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+ GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+ GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+ GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+ GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+ GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=- GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+ GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=- GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+ GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+ GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+ GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+ GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+ GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+ GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+ GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+ GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+ GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+ GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+ GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+ GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+ GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=- GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+ GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+ GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 diff --git a/repo_utils/test_files/answer_key/segment.vcf b/repo_utils/test_files/answer_key/segment.vcf index 9b6d3589..17bb2779 100644 --- a/repo_utils/test_files/answer_key/segment.vcf +++ b/repo_utils/test_files/answer_key/segment.vcf @@ -36,6 +36,8 @@ ##bcftools_viewCommand=view -r chr20:0-1000000 -O z /home/english/science/english/msru/data/intra_merge/grch38/li/NA24385/exact.vcf.gz; Date=Mon Aug 16 16:45:51 2021 ##bcftools_mergeVersion=1.12+htslib-1.12 ##bcftools_mergeCommand=merge -O z -f x -m none input1.vcf.gz input2.vcf.gz input3.vcf.gz; Date=Mon Aug 16 18:05:13 2021 +##FORMAT= +##FORMAT= ##INFO= ##INFO= ##INFO= @@ -43,3520 +45,3523 @@ ##INFO= ##INFO= ##INFO= +##INFO== 0x,5x,10x,15x"> +##INFO== 0x,5x,10x,15x"> +##INFO= ##INFO= ##FORMAT= ploidy)"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA24385 NA12878 HG00733 -chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=-;GCPCT=45;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+;GCPCT=53;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=-;GCPCT=30;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 1/0 -chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+;GCPCT=36;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+;GCPCT=57;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=-;GCPCT=55;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+;GCPCT=52;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 0/1 -chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=-;GCPCT=41;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+;GCPCT=33;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+;GCPCT=20;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+;GCPCT=66;GTCNT=0,0,2,1 GT 1/1 1/0 1/0 -chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149012-149082.100,chr20:149081-149151.100,chr20:149150-149220.100;GCPCT=48;GTCNT=1,0,1,1;NumNeighbors=2;NeighId=0 GT 1/1 ./. 1/0 -chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149013-149073.85,chr20:149072-149142.100,chr20:149141-149211.100;GCPCT=48;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=0 GT ./. ./. 0/1 -chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149163-149220.81,chr20:149025-149095.100,chr20:149094-149164.100;GCPCT=48;GTCNT=2,0,0,1;NumNeighbors=2;NeighId=0 GT ./. 1/1 ./. -chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=-;GCPCT=66;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+;GCPCT=10;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29;GCPCT=33;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+;GCPCT=60;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+;GCPCT=22;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+;GCPCT=35;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+;GCPCT=25;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=-;GCPCT=40;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+;GCPCT=42;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35;GCPCT=22;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+;GCPCT=57;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+;GCPCT=75;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=-;GCPCT=60;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=-;GCPCT=23;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 1/0 -chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 1/0 -chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/1 1/0 1/0 -chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=-;GCPCT=42;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=-;GCPCT=27;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=-;GCPCT=60;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=-;GCPCT=18;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+;GCPCT=44;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=-;GCPCT=25;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+;GCPCT=42;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=-;GCPCT=45;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=-;GCPCT=46;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+;GCPCT=47;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=-;GCPCT=10;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+;GCPCT=40;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+;GCPCT=57;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33;GCPCT=55;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+;GCPCT=20;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+;GCPCT=55;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=-;GCPCT=66;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=-;GCPCT=46;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+;GCPCT=66;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;HOMPCT=3.2;REMAP=partial;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT ./. ./. 0/1 -chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;HOMPCT=3.2;REMAP=partial;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT 0/1 ./. ./. -chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32;GCPCT=75;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139;HOMPCT=3.2;REMAP=tandem;REMAPHits=chr20:279033-279148.87,chr20:278941-279082.100;GCPCT=77;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT 1/0 ./. ./. -chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543;HOMPCT=3.2;REMAP=partial;GCPCT=79;GTCNT=2,0,0,1;NumNeighbors=6;NeighId=1 GT ./. 1/1 ./. -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514;HOMPCT=3.2;REMAP=partial;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT ./. ./. 0/1 -chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438;HOMPCT=3.2;REMAP=partial;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT 0/1 ./. ./. -chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179;HOMPCT=3.2;REMAP=tandem;REMAPHits=chr20:278929-279088.81,chr20:278933-279100.92;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1 GT ./. ./. 1/0 -chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 0/1 -chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=-;GCPCT=11;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+;GCPCT=10;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+;GCPCT=23;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=-;GCPCT=75;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;HOMPCT=33.3;REMAP=tandem;REMAPHits=chr20:306267-306420.86;GCPCT=52;GTCNT=2,0,0,1;NumNeighbors=1;NeighId=3 GT ./. 1/1 ./. -chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;HOMPCT=33.3;REMAP=tandem;REMAPHits=chr20:306267-306420.86;GCPCT=51;GTCNT=1,0,0,2;NumNeighbors=1;NeighId=3 GT 1/1 ./. 1/1 -chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+;GCPCT=14;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+;GCPCT=28;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 1/0 -chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+;GCPCT=66;GTCNT=0,0,2,1 GT 1/1 0/1 1/0 -chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+;GCPCT=42;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+;GCPCT=46;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=-;GCPCT=43;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+;GCPCT=42;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=-;GCPCT=12;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=-;GCPCT=11;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+;GCPCT=54;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+;GCPCT=53;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+;GCPCT=57;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+;GCPCT=75;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 ./. 0/1 -chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+;GCPCT=60;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+;GCPCT=22;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66;HOMPCT=1.7;REMAP=tandem;REMAPHits=chr20:380877-380944.100,chr20:380910-380977.100;GCPCT=62;GTCNT=2,0,1,0;NumNeighbors=0;NeighId=4 GT ./. 1/0 ./. -chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 1/0 -chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 0/1 1/0 -chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=-;GCPCT=55;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+;GCPCT=7;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=-;GCPCT=9;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+;GCPCT=90;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+;GCPCT=63;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;HOMPCT=37;REMAP=partial;GCPCT=76;GTCNT=1,0,1,1;NumNeighbors=1;NeighId=5 GT 1/0 1/1 ./. -chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;HOMPCT=37;REMAP=partial;GCPCT=76;GTCNT=1,0,1,1;NumNeighbors=1;NeighId=5 GT 0/1 ./. 1/1 -chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 1/0 1/0 1/0 -chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+;GCPCT=57;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+;GCPCT=10;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+;GCPCT=14;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+;GCPCT=25;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+;GCPCT=18;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 0/1 1/0 -chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=-;GCPCT=54;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=-;GCPCT=25;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 1/0 -chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 ./. 0/1 -chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+;GCPCT=23;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=-;GCPCT=40;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+;GCPCT=12;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=-;GCPCT=28;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 1/0 -chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:642292-642433.93,chr20:641878-642037.96,chr20:642038-642197.98,chr20:642101-642260.98,chr20:641905-642067.100,chr20:641938-642100.100,chr20:642005-642163.100,chr20:642131-642292.100,chr20:642198-642351.100;GCPCT=81;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. ./. 0/1 -chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:641879-641946.100,chr20:641911-641979.100,chr20:641944-642013.100,chr20:641978-642046.100,chr20:642011-642076.100,chr20:642041-642109.100,chr20:642137-642206.100,chr20:642171-642239.100,chr20:642234-642301.100,chr20:642325-642392.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT 1/0 ./. ./. -chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:641878-642003.94,chr20:642292-642411.96,chr20:642037-642162.96,chr20:641938-642066.98,chr20:642005-642129.98,chr20:642131-642259.98,chr20:642198-642320.98,chr20:641903-642036.100,chr20:641970-642099.100;GCPCT=82;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. ./. 0/1 -chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641866-642420.87,chr20:641881-642435.87;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. 0/1 ./. -chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642013-642429.83,chr20:641881-642391.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT 0/1 ./. ./. -chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641866-642420.87;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. 1/0 ./. -chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641881-642138.99,chr20:642076-642331.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. ./. 1/0 -chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642076-642435.88,chr20:641881-642300.99,chr20:641913-642332.100,chr20:641946-642363.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT 1/0 ./. ./. -chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641882-642108.97,chr20:642014-642238.97,chr20:642077-642300.97,chr20:642207-642420.97,chr20:642140-642362.98;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. ./. 0/1 -chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642076-642138.97,chr20:641913-641980.100,chr20:641946-642014.100,chr20:641980-642046.100,chr20:642043-642109.100,chr20:642139-642207.100,chr20:642173-642239.100,chr20:642206-642272.100,chr20:642236-642301.100,chr20:642297-642361.100;GCPCT=77;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT 0/1 ./. ./. -chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642139-642435.94,chr20:641881-642209.100,chr20:641946-642273.100,chr20:641980-642301.100,chr20:642043-642364.100;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7 GT ./. ./. 1/0 -chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 1/0 -chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=-;GCPCT=84;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+;GCPCT=83;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+;GCPCT=25;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=-;GCPCT=5;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+;GCPCT=72;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+;GCPCT=60;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+;GCPCT=66;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+;GCPCT=47;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=-;GCPCT=75;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 ./. 1/1 -chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 0/1 1/1 -chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+;GCPCT=6;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 1/1 ./. -chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+;GCPCT=40;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+;GCPCT=28;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465;HOMPCT=19.4;REMAP=partial;GCPCT=67;GTCNT=2,0,1,0;NumNeighbors=1;NeighId=8 GT 1/0 ./. ./. -chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 1/0 -chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 1/0 -chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 1/0 -chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 1/0 -chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+;GCPCT=12;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 0/1 -chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+;GCPCT=20;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=-;GCPCT=18;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+;GCPCT=57;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+;GCPCT=55;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+;GCPCT=54;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+;GCPCT=55;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 1/0 -chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+;GCPCT=9;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=-;GCPCT=27;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25;GCPCT=23;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33;GCPCT=23;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+;GCPCT=26;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+;GCPCT=55;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+;GCPCT=54;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;HOMPCT=50;REMAP=tandem;REMAPHits=chr20:764441-764520.100;GCPCT=63;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=9 GT ./. ./. 1/0 -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117;HOMPCT=51.4;REMAP=tandem;REMAPHits=chr20:764431-764537.89;GCPCT=63;GTCNT=1,0,1,1;NumNeighbors=2;NeighId=9 GT 1/1 0/1 ./. -chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;HOMPCT=51.4;REMAP=tandem;REMAPHits=chr20:764431-764498.84,chr20:764458-764537.100;GCPCT=63;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=9 GT ./. 1/0 ./. -chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+;GCPCT=25;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 1/0 -chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=-;GCPCT=8;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+;GCPCT=7;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+;GCPCT=12;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 0/1 1/1 ./. -chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 0/1 ./. -chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+;GCPCT=20;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+;GCPCT=61;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/0 1/1 -chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/0 1/1 -chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=-;GCPCT=11;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 1/0 ./. -chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 0/1 0/1 1/0 -chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=-;GCPCT=33;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 1/0 -chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2 GT ./. 1/1 1/1 -chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 1/0 1/1 1/0 -chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+;GCPCT=57;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=-;GCPCT=33;GTCNT=1,0,2,0 GT ./. 1/0 0/1 -chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 ./. 1/0 -chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+;GCPCT=25;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+;GCPCT=20;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=-;GCPCT=28;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+;GCPCT=70;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 0/1 0/1 -chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+;GCPCT=42;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+;GCPCT=45;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+;GCPCT=46;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=-;GCPCT=42;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+;GCPCT=33;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2 GT 1/1 ./. 1/1 -chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1 GT 1/0 1/1 ./. -chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+;GCPCT=42;GTCNT=1,0,1,1 GT 0/1 ./. 1/1 -chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 0/1 1/0 1/0 -chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=-;GCPCT=41;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 1/0 1/1 0/1 -chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/0 1/1 1/1 -chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+;GCPCT=33;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 0/1 ./. -chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 0/1 ./. -chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 0/1 -chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+;GCPCT=57;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 1/0 -chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 1/0 0/1 -chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 1/1 1/0 1/0 -chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 1/0 1/0 ./. -chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1 GT ./. 1/1 ./. -chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=-;GCPCT=66;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 0/1 0/1 -chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 0/1 0/1 0/1 -chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0 GT 1/0 0/1 0/1 -chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT ./. 0/1 0/1 -chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0 GT 0/1 ./. 1/0 -chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 0/1 1/1 -chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1 GT ./. 0/1 1/1 -chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1 GT 0/1 0/1 1/1 -chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 0/1 1/1 1/1 -chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1 GT 0/1 1/1 0/1 -chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. 1/0 ./. -chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/1 0/1 -chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+;GCPCT=14;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+;GCPCT=69;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3 GT 1/1 1/1 1/1 -chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+;GCPCT=38;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1 GT ./. 1/1 0/1 -chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=-;GCPCT=20;GTCNT=1,0,2,0 GT ./. 1/0 1/0 -chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+;GCPCT=20;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 0/1 ./. ./. -chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1 GT 1/1 ./. ./. -chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1 GT 1/1 ./. 1/0 -chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0 GT 0/1 1/0 ./. -chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+;GCPCT=60;GTCNT=1,0,2,0 GT 1/0 ./. 0/1 -chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT ./. 0/1 ./. -chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=-;GCPCT=80;GTCNT=2,0,0,1 GT ./. ./. 1/1 -chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2 GT 1/1 1/0 1/1 -chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0 GT ./. ./. 0/1 -chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=64;HOMPCT=3.3;REMAP=tandem;REMAPHits=chr20:280274-280339.100,chr20:280338-280403.100;GCPCT=40;GTCNT=2,0,1,0;NumNeighbors=0;NeighId=2 GT ./. ./. 1/0 -chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33;GCPCT=61;GTCNT=2,0,1,0 GT ./. ./. 1/0 -chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33;GCPCT=0;GTCNT=2,0,1,0 GT 1/0 ./. ./. -chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=54;HOMPCT=29.3;REMAP=novel;GCPCT=56;GTCNT=0,0,1,2;NumNeighbors=0;NeighId=6 GT 1/1 1/0 1/1 -chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=93;HOMPCT=19.4;REMAP=tandem;REMAPHits=chr20:709851-709945.100;GCPCT=67;GTCNT=0,0,2,1;NumNeighbors=1;NeighId=8 GT 0/1 1/0 1/1 +chr20 63971 . TTCCATTCCAC T 60 . QNAME=cluster19_000000F;QSTART=25698928;QSTRAND=-;GCPCT=45;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.747459 GT:DP:AD ./.:17:12,5 1|0:42:24,18 ./.:33:14,19 +chr20 64506 . C CTCCAT 60 . QNAME=cluster19_000000F;QSTART=25698398;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.729574 GT:DP:AD ./.:35:13,22 1|0:30:14,16 ./.:21:12,9 +chr20 66141 . AATTCC A 60 . QNAME=cluster23_scaffold_3;QSTART=25645835;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD ./.:18:10,8 ./.:43:18,25 1|1:32:16,16 +chr20 66235 . C CGACTCCACTCCATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=45138;QSTRAND=+;GCPCT=53;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.873233 GT:DP:AD 1|1:42:20,22 1|1:27:5,22 1|1:33:22,11 +chr20 66369 . C T 60 . QNAME=cluster19_000000F;QSTART=25696521;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:21,13 1|0:30:21,9 ./.:41:16,25 +chr20 67373 . G GAAATGTGAT 60 . QNAME=cluster23_scaffold_2;QSTART=25629267;QSTRAND=-;GCPCT=30;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.785475 GT:DP:AD ./.:38:18,20 ./.:37:20,17 0|1:29:20,9 +chr20 68303 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=47219;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:41:18,23 0|1:43:18,25 1|1:29:15,14 +chr20 72450 . G A 60 . QNAME=cluster19_000000F;QSTART=25690440;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:16:6,10 1|0:23:10,13 ./.:33:15,18 +chr20 72765 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=51682;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:14:9,5 0|1:33:10,23 1|0:36:18,18 +chr20 72765 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=25623873;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:43:18,25 ./.:15:6,9 0|1:31:13,18 +chr20 72765 . TA T 60 . QNAME=cluster19_000000F;QSTART=25690125;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:39:16,23 1|0:48:24,24 ./.:24:15,9 +chr20 72982 . A C 60 . QNAME=cluster19_000000F;QSTART=25689909;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:43:18,25 1|0:32:23,9 ./.:17:6,11 +chr20 73765 . C A 60 . QNAME=cluster19_000000F;QSTART=25689126;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:6,20 1|0:22:9,13 ./.:14:8,6 +chr20 75250 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25621388;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:19:8,11 ./.:16:5,11 0|1:18:11,7 +chr20 76709 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25635256;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:27:7,20 ./.:37:25,12 1|0:43:25,18 +chr20 77005 . A G 60 . QNAME=cluster19_000000F;QSTART=25685886;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:7,20 1|0:14:6,8 ./.:32:13,19 +chr20 77736 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25618901;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:47:23,24 ./.:28:13,15 0|1:36:17,19 +chr20 77736 . CA C 60 . QNAME=cluster19_000000F;QSTART=25685155;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:34:11,23 1|0:30:14,16 ./.:41:25,16 +chr20 78705 . A T 60 . QNAME=cluster19_000000F;QSTART=25684187;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:38:14,24 1|0:45:22,23 ./.:45:21,24 +chr20 80457 . C T 60 . QNAME=cluster19_000000F;QSTART=25682435;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:18,12 1|0:33:12,21 ./.:41:17,24 +chr20 80497 . C CT 60 . QNAME=cluster19_000000F;QSTART=25682394;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:37:13,24 1|0:32:20,12 ./.:26:16,10 +chr20 81154 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=60071;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:11:5,6 0|1:36:16,20 1|1:27:16,11 +chr20 82603 . A C 60 . QNAME=cluster19_000000F;QSTART=25680288;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:19:6,13 1|0:24:11,13 ./.:24:12,12 +chr20 83158 . C T 60 . QNAME=cluster19_000000F;QSTART=25679733;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:8,17 1|0:31:11,20 ./.:32:10,22 +chr20 85259 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64176;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:24:11,13 0|1:38:19,19 1|1:31:19,12 +chr20 85729 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=64646;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:25:17,8 0|1:30:16,14 1|1:31:14,17 +chr20 86079 . C A 60 . QNAME=cluster19_000000F;QSTART=45136;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:15:7,8 0|1:34:14,20 ./.:29:15,14 +chr20 86859 . T TTGGTATCTAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=65777;QSTRAND=+;GCPCT=36;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.894965 GT:DP:AD 1|1:34:25,9 0|1:36:19,17 1|1:38:17,21 +chr20 88108 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=67035;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:20:7,13 1|1:40:24,16 1|1:33:11,22 +chr20 88453 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25623502;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:24:12,12 ./.:24:10,14 1|0:33:22,11 +chr20 88865 . G GACAC 60 . QNAME=cluster19_000000F;QSTART=25674022;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:44:23,21 1|0:32:21,11 ./.:45:23,22 +chr20 88865 . G GACACAC 60 . QNAME=cluster19_000000F;QSTART=47933;QSTRAND=+;GCPCT=57;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.724408 GT:DP:AD ./.:18:9,9 0|1:30:12,18 1|0:38:17,21 +chr20 89843 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=25673044;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.485475 GT:DP:AD ./.:28:13,15 1|0:15:6,9 ./.:37:23,14 +chr20 90339 . G A 60 . QNAME=cluster19_000000F;QSTART=25672552;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:20,12 1|0:30:15,15 ./.:25:18,7 +chr20 91463 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=70391;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|1:38:15,23 1|0:37:25,12 ./.:23:10,13 +chr20 92251 . G A 60 . QNAME=cluster19_000000F;QSTART=25670641;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:18,19 1|0:41:25,16 ./.:36:12,24 +chr20 92395 . C CT 60 . QNAME=cluster19_000000F;QSTART=25670496;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:15:8,7 1|0:24:19,5 ./.:35:17,18 +chr20 92969 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25618979;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:32:12,20 ./.:28:13,15 1|0:30:17,13 +chr20 92969 . CT C 60 . QNAME=cluster19_000000F;QSTART=25669922;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:39:16,23 1|1:40:15,25 ./.:23:7,16 +chr20 92969 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=71896;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|1:43:20,23 ./.:35:17,18 ./.:43:20,23 +chr20 93706 . G A 60 . QNAME=cluster19_000000F;QSTART=52778;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:31:21,10 0|1:31:21,10 ./.:38:18,20 +chr20 94088 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=73013;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:27:20,7 1|0:26:8,18 ./.:39:21,18 +chr20 94613 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=73538;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:27:21,6 ./.:21:15,6 ./.:20:13,7 +chr20 96130 . C T 60 . QNAME=cluster19_000000F;QSTART=25666761;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:14,25 1|0:34:22,12 ./.:32:7,25 +chr20 96321 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=75246;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:19,16 1|1:28:12,16 ./.:33:23,10 +chr20 97324 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=76250;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:20:15,5 ./.:33:8,25 ./.:24:12,12 +chr20 98593 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=77519;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:27:14,13 1|0:30:9,21 ./.:26:8,18 +chr20 99430 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=78356;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:17,20 ./.:49:24,25 ./.:31:17,14 +chr20 99840 . G C 60 . QNAME=cluster19_000000F;QSTART=25663051;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:19,18 1|0:41:19,22 ./.:24:5,19 +chr20 100014 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=78940;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:21:11,10 1|1:32:10,22 1|1:11:5,6 +chr20 101338 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54816;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:21:5,16 ./.:16:7,9 ./.:14:6,8 +chr20 101341 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610607;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:46:25,21 ./.:48:25,23 1|0:31:6,25 +chr20 101371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=80297;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:14:6,8 0|1:34:17,17 ./.:28:8,20 +chr20 101433 . A C 60 . QNAME=cluster19_000000F;QSTART=25661458;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:14,22 1|1:30:12,18 ./.:24:11,13 +chr20 101438 . G A 60 . QNAME=cluster19_000000F;QSTART=25661453;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:22,8 1|1:47:22,25 ./.:27:8,19 +chr20 101498 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25610450;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:21:6,15 ./.:36:21,15 1|0:25:9,16 +chr20 101505 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=54983;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:47:25,22 ./.:31:7,24 1|0:36:25,11 +chr20 101576 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=80502;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:19:10,9 1|1:30:10,20 0|1:18:6,12 +chr20 102609 . C CTGTG 60 . QNAME=cluster23_scaffold_2;QSTART=25594014;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:19:5,14 ./.:21:6,15 0|1:30:14,16 +chr20 102609 . CTG C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56088;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 0|1:45:20,25 ./.:15:6,9 ./.:17:5,12 +chr20 102609 . CTGTGTGTG C 60 . QNAME=cluster19_000000F;QSTART=25660282;QSTRAND=-;GCPCT=55;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.696074 GT:DP:AD ./.:43:19,24 1|1:26:12,14 1|0:31:23,8 +chr20 102609 . CTGTGTGTGTGTGTGTGTGTGTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81536;QSTRAND=+;GCPCT=52;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.60727 GT:DP:AD 1|0:22:16,6 ./.:44:20,24 ./.:28:21,7 +chr20 102613 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=56089;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:25:14,11 ./.:39:20,19 ./.:35:11,24 +chr20 102619 . G C 60 . QNAME=cluster19_000000F;QSTART=25660280;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:21,20 1|1:40:16,24 1|0:29:18,11 +chr20 102621 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609335;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:49:25,24 ./.:37:22,15 1|0:28:15,13 +chr20 102623 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25609333;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:30:15,15 ./.:38:23,15 1|0:34:16,18 +chr20 102633 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=81537;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:45:25,20 ./.:14:6,8 ./.:23:12,11 +chr20 102634 . T C 60 . QNAME=cluster19_000000F;QSTART=25660265;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:24:7,17 1|1:31:22,9 ./.:13:7,6 +chr20 105364 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25591258;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:39:16,23 ./.:28:16,12 0|1:24:8,16 +chr20 105364 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=84269;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:33:12,21 ./.:31:13,18 ./.:42:24,18 +chr20 106471 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=85374;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:40:18,22 ./.:31:8,23 ./.:27:5,22 +chr20 106775 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=85678;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:20:7,13 ./.:41:19,22 0|1:20:15,5 +chr20 107149 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25589473;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:23:11,12 ./.:22:12,10 0|1:28:22,6 +chr20 107514 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25589108;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:19,17 ./.:38:15,23 0|1:15:10,5 +chr20 109367 . C A 60 . QNAME=cluster19_000000F;QSTART=25653532;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:35:11,24 1|1:38:23,15 ./.:12:6,6 +chr20 110447 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=89350;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:30:5,25 1|1:20:6,14 0|1:31:23,8 +chr20 110867 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=89770;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:26:18,8 1|1:29:9,20 0|1:24:15,9 +chr20 111066 . C T 60 . QNAME=cluster19_000000F;QSTART=70130;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:11,22 0|1:37:14,23 ./.:43:24,19 +chr20 111725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90628;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:18:6,12 ./.:22:17,5 ./.:32:7,25 +chr20 111886 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=90789;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:45:24,21 1|1:36:11,25 0|1:32:14,18 +chr20 112799 . A G 60 . QNAME=cluster19_000000F;QSTART=25650100;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:19:5,14 1|0:31:7,24 ./.:47:22,25 +chr20 113005 . C CT 60 . QNAME=cluster19_000000F;QSTART=25649893;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:24:13,11 1|0:19:14,5 ./.:35:11,24 +chr20 113290 . G A 60 . QNAME=cluster19_000000F;QSTART=25649608;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:19:10,9 1|0:27:21,6 ./.:29:9,20 +chr20 115856 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25580766;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:20,13 ./.:25:16,9 0|1:46:21,25 +chr20 120058 . C T 60 . QNAME=cluster19_000000F;QSTART=25642840;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:10,15 1|0:32:22,10 ./.:21:16,5 +chr20 120721 . G A 60 . QNAME=cluster19_000000F;QSTART=79785;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:12,24 0|1:15:6,9 ./.:40:24,16 +chr20 121264 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=74739;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:32:20,12 ./.:19:9,10 ./.:34:16,18 +chr20 121439 . TATTCTTCAGCTGTCAAA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=100343;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.93882 GT:DP:AD 1|1:36:18,18 ./.:32:8,24 ./.:39:14,25 +chr20 121540 . T C 60 . QNAME=cluster19_000000F;QSTART=25641358;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:26:11,15 1|0:28:5,23 ./.:32:18,14 +chr20 122158 . G A 60 . QNAME=cluster19_000000F;QSTART=25640740;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:7,13 1|0:27:20,7 ./.:26:7,19 +chr20 122876 . A T 60 . QNAME=cluster19_000000F;QSTART=25640022;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:21,5 1|0:30:19,11 ./.:34:9,25 +chr20 124258 . C T 60 . QNAME=cluster19_000000F;QSTART=25638640;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:13,24 1|0:33:21,12 ./.:39:19,20 +chr20 125994 . G A 60 . QNAME=cluster19_000000F;QSTART=25636904;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:47:23,24 1|0:13:8,5 ./.:36:11,25 +chr20 126062 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=104949;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:41:25,16 0|1:33:20,13 1|1:45:24,21 +chr20 126062 . C CTTT 60 . QNAME=cluster19_000000F;QSTART=25636833;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:45:24,21 1|0:29:9,20 ./.:31:18,13 +chr20 127645 . T G 60 . QNAME=cluster19_000000F;QSTART=25635250;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:28:19,9 1|0:33:15,18 ./.:47:25,22 +chr20 127687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=106574;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:32:17,15 1|1:31:8,23 0|1:32:11,21 +chr20 128317 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=107204;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:39:15,24 ./.:41:18,23 ./.:13:6,7 +chr20 128517 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=81976;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:31:12,19 0|1:21:6,15 ./.:41:16,25 +chr20 128517 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=107405;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 1|0:18:8,10 ./.:48:25,23 1|0:38:22,16 +chr20 128517 . CA C 60 . QNAME=cluster19_000000F;QSTART=25634378;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:26:21,5 1|0:19:10,9 ./.:45:20,25 +chr20 129417 . G C 60 . QNAME=cluster19_000000F;QSTART=25633479;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:6,25 1|0:38:19,19 ./.:32:13,19 +chr20 129457 . A G 60 . QNAME=cluster19_000000F;QSTART=25633439;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:34:15,19 1|0:41:24,17 ./.:31:10,21 +chr20 130061 . C T 60 . QNAME=cluster19_000000F;QSTART=25632835;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:17:10,7 1|0:36:17,19 ./.:27:13,14 +chr20 130282 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=83741;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:14,18 ./.:36:19,17 ./.:24:10,14 +chr20 130329 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=109218;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:27:7,20 ./.:47:24,23 ./.:35:16,19 +chr20 130338 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109227;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:21:7,14 0|1:48:23,25 0|1:34:24,10 +chr20 130338 . A G 60 . QNAME=cluster19_000000F;QSTART=25632558;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:35:19,16 1|0:25:17,8 ./.:20:5,15 +chr20 130339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=109228;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:34:14,20 0|1:41:22,19 0|1:44:19,25 +chr20 130636 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25565985;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:16,23 ./.:42:20,22 0|1:24:13,11 +chr20 130736 . A C 60 . QNAME=cluster19_000000F;QSTART=25632160;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:20:8,12 1|0:21:10,11 ./.:40:24,16 +chr20 130742 . T C 60 . QNAME=cluster19_000000F;QSTART=25632154;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:38:25,13 1|0:21:12,9 ./.:37:23,14 +chr20 131163 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=110052;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:28:13,15 ./.:39:25,14 ./.:27:22,5 +chr20 131230 . A G 60 . QNAME=cluster19_000000F;QSTART=25631666;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:14,21 1|0:30:9,21 ./.:35:21,14 +chr20 131374 . G A 60 . QNAME=cluster19_000000F;QSTART=25631522;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:13:6,7 1|0:38:16,22 ./.:21:6,15 +chr20 132236 . C T 60 . QNAME=cluster19_000000F;QSTART=91302;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:32:7,25 0|1:29:23,6 ./.:36:20,16 +chr20 133539 . T C 60 . QNAME=cluster19_000000F;QSTART=25629357;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:23:8,15 1|0:35:21,14 ./.:47:25,22 +chr20 133631 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25562990;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:16,16 ./.:37:23,14 0|1:44:19,25 +chr20 133700 . C A 60 . QNAME=cluster19_000000F;QSTART=25629196;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:16,12 1|0:35:12,23 ./.:35:17,18 +chr20 134275 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25562346;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:27:19,8 ./.:29:11,18 0|1:27:20,7 +chr20 134452 . A C 60 . QNAME=cluster19_000000F;QSTART=25628444;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:19:12,7 1|0:25:15,10 ./.:22:10,12 +chr20 134675 . C CA 60 . QNAME=cluster19_000000F;QSTART=25628220;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:16:5,11 1|0:24:6,18 ./.:36:23,13 +chr20 134915 . G A 60 . QNAME=cluster19_000000F;QSTART=25627980;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:17:6,11 1|0:37:15,22 ./.:36:13,23 +chr20 135005 . T C 60 . QNAME=cluster19_000000F;QSTART=25627890;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:43:20,23 1|0:22:17,5 ./.:27:19,8 +chr20 135211 . C CA 60 . QNAME=cluster19_000000F;QSTART=25627683;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:31:23,8 1|0:40:19,21 ./.:23:5,18 +chr20 135293 . C G 60 . QNAME=cluster19_000000F;QSTART=25627601;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:15:5,10 1|0:30:5,25 ./.:35:13,22 +chr20 135387 . G A 60 . QNAME=cluster19_000000F;QSTART=94453;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:24:16,8 0|1:28:23,5 ./.:30:22,8 +chr20 135595 . A G 60 . QNAME=cluster19_000000F;QSTART=25627299;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:25,15 1|0:28:13,15 ./.:29:7,22 +chr20 135764 . G A 60 . QNAME=cluster19_000000F;QSTART=25627130;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:45:24,21 1|0:34:23,11 ./.:28:11,17 +chr20 135904 . G A 60 . QNAME=cluster19_000000F;QSTART=25626990;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:36:25,11 1|0:36:24,12 ./.:17:10,7 +chr20 136146 . A G 60 . QNAME=cluster19_000000F;QSTART=25626748;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:13,18 1|0:20:12,8 ./.:30:11,19 +chr20 136216 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=89675;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:42:23,19 ./.:27:20,7 ./.:27:5,22 +chr20 136668 . G GCAGGATTTCAT 60 . QNAME=cluster19_000000F;QSTART=25626215;QSTRAND=-;GCPCT=41;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.979574 GT:DP:AD ./.:22:7,15 1|0:24:7,17 ./.:32:10,22 +chr20 139004 . G GT 60 . QNAME=cluster19_000000F;QSTART=25623878;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:19:8,11 1|1:41:21,20 ./.:23:7,16 +chr20 139481 . A AAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=118371;QSTRAND=+;GCPCT=33;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD 1|1:29:23,6 1|1:31:17,14 0|1:28:8,20 +chr20 139830 . A G 60 . QNAME=cluster19_000000F;QSTART=25623050;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:12,20 1|0:20:9,11 ./.:33:13,20 +chr20 140109 . C CAATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=119001;QSTRAND=+;GCPCT=20;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD 1|1:35:15,20 1|1:28:17,11 0|1:31:7,24 +chr20 140669 . A C 60 . QNAME=cluster19_000000F;QSTART=25622207;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:20,21 1|0:32:15,17 ./.:31:19,12 +chr20 140837 . C A 60 . QNAME=cluster19_000000F;QSTART=25622039;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:16,8 1|0:45:20,25 ./.:36:17,19 +chr20 140838 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25571114;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:36:20,16 ./.:38:16,22 1|0:24:16,8 +chr20 140859 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25571092;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:44:21,23 ./.:29:6,23 1|1:33:15,18 +chr20 140859 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=94325;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:27:6,21 1|0:23:18,5 ./.:29:11,18 +chr20 141183 . C T 60 . QNAME=cluster19_000000F;QSTART=25621694;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:40:24,16 1|0:14:9,5 ./.:39:19,20 +chr20 141335 . G A 60 . QNAME=cluster19_000000F;QSTART=25621542;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:6,15 1|0:32:14,18 ./.:29:22,7 +chr20 141634 . GA G 60 . QNAME=cluster19_000000F;QSTART=25621243;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:43:22,21 1|0:36:18,18 ./.:30:8,22 +chr20 141867 . G A 60 . QNAME=cluster19_000000F;QSTART=25621011;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:12,24 1|0:37:12,25 ./.:34:24,10 +chr20 142165 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25620711;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:20:11,9 1|0:26:15,11 ./.:26:7,19 +chr20 143010 . G GT 60 . QNAME=cluster19_000000F;QSTART=102084;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:33:21,12 0|1:21:13,8 0|1:28:18,10 +chr20 143661 . A C 60 . QNAME=cluster19_000000F;QSTART=25619215;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:22,11 1|0:34:12,22 ./.:28:9,19 +chr20 143771 . C T 60 . QNAME=cluster19_000000F;QSTART=25619105;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:28:5,23 1|0:13:7,6 ./.:23:18,5 +chr20 144480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=123375;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:11,22 ./.:17:10,7 ./.:29:13,16 +chr20 144897 . G C 60 . QNAME=cluster19_000000F;QSTART=25617979;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:27:8,19 1|0:31:7,24 ./.:33:13,20 +chr20 145514 . GCAAA G 60 . QNAME=cluster19_000000F;QSTART=25617362;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.685475 GT:DP:AD ./.:22:13,9 1|0:33:22,11 ./.:40:21,19 +chr20 145669 . ACC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=124565;QSTRAND=+;GCPCT=66;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD 1|1:31:20,11 1|0:32:17,15 1|0:19:10,9 +chr20 145888 . G A 60 . QNAME=cluster19_000000F;QSTART=25616994;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:22:15,7 1|1:26:5,21 ./.:25:6,19 +chr20 145959 . C A 60 . QNAME=cluster19_000000F;QSTART=25616923;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:25,10 1|1:34:10,24 ./.:37:20,17 +chr20 145973 . T C 60 . QNAME=cluster19_000000F;QSTART=25616909;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:11,21 1|1:13:7,6 ./.:29:18,11 +chr20 146089 . C T 60 . QNAME=cluster19_000000F;QSTART=25616793;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:22:6,16 1|1:38:18,20 ./.:30:24,6 +chr20 146119 . C T 60 . QNAME=cluster19_000000F;QSTART=25616763;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:25:17,8 1|1:24:19,5 ./.:29:18,11 +chr20 146282 . C A 60 . QNAME=cluster19_000000F;QSTART=25616600;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:13,15 1|1:22:6,16 ./.:23:7,16 +chr20 146289 . A T 60 . QNAME=cluster19_000000F;QSTART=25616593;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:30:17,13 1|1:45:22,23 ./.:39:25,14 +chr20 147079 . A C 60 . QNAME=cluster19_000000F;QSTART=25615803;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:35:11,24 1|1:24:16,8 ./.:20:14,6 +chr20 147311 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25564642;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:45:21,24 ./.:17:7,10 1|1:36:18,18 +chr20 148061 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=101523;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 0|1:33:25,8 ./.:27:19,8 ./.:21:16,5 +chr20 148072 . C G 60 . QNAME=cluster19_000000F;QSTART=25614810;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:33:24,9 1|1:31:23,8 ./.:24:10,14 +chr20 148222 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25563731;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:18,22 ./.:41:16,25 1|1:42:22,20 +chr20 148422 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25563531;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:24,18 ./.:44:19,25 1|1:20:6,14 +chr20 148972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=127865;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:23:9,14 1|1:33:15,18 1|1:23:16,7 +chr20 148994 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=127887;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:20:12,8 ./.:39:24,15 ./.:26:5,21 +chr20 149013 . A ACCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=127907;QSTRAND=+;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149012-149082.100,chr20:149081-149151.100,chr20:149150-149220.100;GCPCT=48;GTCNT=1,0,1,1;NumNeighbors=2;NeighId=0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.98203 GT:DP:AD 1/1:35:19,16 ./.:31:21,10 1/0:17:8,9 +chr20 149073 . G GAATCCTGACCCATATTTGGGAGGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCA 60 . QNAME=cluster23_scaffold_2;QSTART=25547471;QSTRAND=-;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149013-149073.85,chr20:149072-149142.100,chr20:149141-149211.100;GCPCT=48;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.98203 GT:DP:AD ./.:44:25,19 ./.:36:12,24 0/1:27:20,7 +chr20 149095 . G GGCAATTTTACCTGTTCTCAAGGCCGCATCTCTACCCCATCTCATGCGAATCCTGACCCATATTTGGGAA 60 . QNAME=cluster19_000000F;QSTART=25613718;QSTRAND=-;SVTYPE=INS;SVLEN=69;HOMPCT=31.7;REMAP=tandem;REMAPHits=chr20:149163-149220.81,chr20:149025-149095.100,chr20:149094-149164.100;GCPCT=48;GTCNT=2,0,0,1;NumNeighbors=2;NeighId=0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.98203 GT:DP:AD ./.:36:13,23 1/1:14:7,7 ./.:40:19,21 +chr20 149223 . C T 60 . QNAME=cluster19_000000F;QSTART=25613590;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:26:5,21 1|1:42:19,23 ./.:38:21,17 +chr20 150418 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25546126;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:22:14,8 ./.:28:18,10 0|1:35:25,10 +chr20 150492 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25561392;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:17,22 ./.:37:20,17 1|0:29:9,20 +chr20 150721 . C T 60 . QNAME=cluster19_000000F;QSTART=25612092;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:30:24,6 1|1:14:5,9 ./.:33:17,16 +chr20 150854 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=129816;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:41:20,21 1|1:31:13,18 1|1:29:16,13 +chr20 150864 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=25611949;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:30:12,18 1|1:14:5,9 ./.:25:19,6 +chr20 151016 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=129978;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:25:5,20 1|1:40:18,22 1|1:42:17,25 +chr20 151307 . C CCA 60 . QNAME=cluster19_000000F;QSTART=25611507;QSTRAND=-;GCPCT=66;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:21:11,10 1|1:22:17,5 ./.:31:10,21 +chr20 151663 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=130626;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:32:14,18 1|1:31:9,22 1|1:29:24,5 +chr20 151898 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25544647;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:25,5 ./.:25:13,12 0|1:37:20,17 +chr20 152134 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131095;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:20,17 ./.:34:24,10 ./.:43:18,25 +chr20 152450 . C CA 60 . QNAME=cluster19_000000F;QSTART=25610364;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:50:25,25 1|1:30:23,7 ./.:33:15,18 +chr20 152450 . CAA C 60 . QNAME=cluster23_scaffold_2;QSTART=25544095;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:40:25,15 ./.:28:7,21 0|1:36:13,23 +chr20 152450 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131412;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|1:11:5,6 ./.:27:12,15 1|0:43:18,25 +chr20 152517 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=131475;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:14:8,6 1|1:33:19,14 1|1:16:7,9 +chr20 152792 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=131750;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:25:5,20 ./.:32:17,15 1|1:21:11,10 +chr20 153098 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=132057;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:49:24,25 ./.:27:21,6 1|1:39:23,16 +chr20 153259 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132218;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:31:15,16 ./.:26:12,14 1|1:32:18,14 +chr20 153376 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=106903;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:12,11 1|1:27:6,21 ./.:38:23,15 +chr20 153555 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558332;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:35:17,18 ./.:26:5,21 1|1:45:22,23 +chr20 153640 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25558247;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:25:20,5 ./.:32:25,7 1|1:49:24,25 +chr20 153643 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132602;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:45:20,25 1|1:16:6,10 1|1:25:14,11 +chr20 153725 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=132684;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:11,24 1|1:25:6,19 1|1:15:5,10 +chr20 153759 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=132718;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:17,16 ./.:32:14,18 1|0:36:23,13 +chr20 153780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132739;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:26:19,7 1|1:31:6,25 1|1:29:5,24 +chr20 153787 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132747;QSTRAND=+;GCPCT=10;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.234498 GT:DP:AD 1|1:36:19,17 1|1:23:11,12 1|1:20:13,7 +chr20 153835 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=132785;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:21:15,6 1|1:30:9,21 1|1:14:7,7 +chr20 153898 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132848;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:20:13,7 ./.:30:25,5 1|0:36:16,20 +chr20 154002 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=132952;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:38:17,21 1|1:27:9,18 1|1:40:25,15 +chr20 154128 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=133079;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:25:6,19 ./.:33:16,17 1|1:22:17,5 +chr20 154203 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=133154;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:26:12,14 1|1:37:13,24 1|1:27:6,21 +chr20 154290 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=133241;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:29:6,23 1|1:33:10,23 1|1:37:17,20 +chr20 154474 . G GTTTGCATTCACAGGAAGACTATAAATAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=133426;QSTRAND=+;SVTYPE=INS;SVLEN=29;GCPCT=33;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.949465 GT:DP:AD 1/1:24:18,6 1/1:18:11,7 1/1:19:9,10 +chr20 154475 . TGCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133456;QSTRAND=+;GCPCT=60;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.760964 GT:DP:AD 1|1:33:8,25 1|1:36:21,15 1|1:28:20,8 +chr20 154847 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=133823;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:35:14,21 1|1:27:9,18 1|1:22:7,15 +chr20 155384 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=134360;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:24:13,11 ./.:25:12,13 1|1:17:7,10 +chr20 155733 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=134709;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:17:10,7 ./.:25:13,12 1|1:36:24,12 +chr20 155813 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=134789;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:15,22 ./.:27:11,16 1|1:23:5,18 +chr20 156080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=135056;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:26:12,14 ./.:21:15,6 1|1:28:21,7 +chr20 156287 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=135264;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:31:12,19 ./.:49:25,24 1|1:20:8,12 +chr20 156473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135450;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:13,17 ./.:41:25,16 1|1:35:10,25 +chr20 156486 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=110029;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:31:9,22 1|1:31:8,23 ./.:31:19,12 +chr20 156669 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=135646;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:37:25,12 ./.:32:17,15 1|1:21:14,7 +chr20 156813 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135790;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:19:9,10 ./.:25:14,11 1|1:36:13,23 +chr20 156877 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135855;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 1|1:35:19,16 1|1:19:8,11 1|1:39:16,23 +chr20 156881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=135856;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:50:25,25 ./.:35:14,21 1|1:33:9,24 +chr20 157033 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=110574;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:15:6,9 1|1:34:19,15 ./.:38:17,21 +chr20 157259 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136234;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:25:6,19 ./.:25:14,11 1|1:34:21,13 +chr20 157292 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136267;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:30:11,19 1|1:21:14,7 1|1:35:25,10 +chr20 157363 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136338;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:18:9,9 1|1:20:12,8 1|1:33:24,9 +chr20 157484 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136459;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:19,6 ./.:25:7,18 1|1:21:6,15 +chr20 157507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=136482;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:17,12 ./.:44:22,22 1|1:27:6,21 +chr20 157537 . GC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=111079;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:39:15,24 1|1:15:7,8 ./.:41:22,19 +chr20 157819 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136794;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:10,22 ./.:17:10,7 1|1:26:13,13 +chr20 157914 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136889;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:10,21 ./.:35:23,12 1|1:16:8,8 +chr20 157922 . AATAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25538608;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.485475 GT:DP:AD ./.:19:12,7 ./.:33:17,16 0|1:27:5,22 +chr20 157927 . ATATATG A 60 . QNAME=cluster23_scaffold_3;QSTART=25553944;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.724408 GT:DP:AD ./.:33:10,23 ./.:19:9,10 1|0:36:12,24 +chr20 157927 . ATATATGTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136903;QSTRAND=+;GCPCT=22;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.765247 GT:DP:AD 1|0:23:7,16 ./.:26:8,18 ./.:42:24,18 +chr20 157929 . ATATGTGTG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=111470;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.765247 GT:DP:AD 0|1:41:18,23 1|1:32:16,16 ./.:15:10,5 +chr20 157960 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111492;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:26:9,17 1|1:24:10,14 ./.:32:20,12 +chr20 157962 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=111494;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:32:15,17 1|1:30:18,12 ./.:35:24,11 +chr20 157965 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=136932;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:13:8,5 ./.:38:21,17 1|1:27:17,10 +chr20 157974 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=136941;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:25,6 ./.:33:21,12 1|1:30:14,16 +chr20 157979 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=136946;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:25,14 ./.:46:21,25 1|1:15:7,8 +chr20 158513 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=137480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:31:8,23 ./.:22:5,17 1|1:44:23,21 +chr20 158532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=137499;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:18,9 ./.:49:24,25 1|0:33:22,11 +chr20 158721 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112253;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:17,13 1|1:14:6,8 ./.:43:20,23 +chr20 158768 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137735;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:36:24,12 ./.:26:15,11 1|1:31:8,23 +chr20 158815 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137782;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:17,21 ./.:25:13,12 1|1:39:16,23 +chr20 158935 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=137902;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:19:14,5 ./.:36:23,13 1|1:41:25,16 +chr20 159104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=138071;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:35:25,10 1|1:24:6,18 1|1:19:6,13 +chr20 159197 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25537337;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:24:10,14 ./.:26:17,9 0|1:28:22,6 +chr20 159200 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=112732;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:6,20 1|1:44:24,20 ./.:31:22,9 +chr20 159274 . T TAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=112807;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:21:6,15 1|1:31:11,20 ./.:31:23,8 +chr20 159274 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=138242;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.295836 GT:DP:AD 1|0:24:13,11 ./.:23:6,17 1|1:19:13,6 +chr20 159286 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138259;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:28:13,15 ./.:25:15,10 1|1:29:18,11 +chr20 159445 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=112979;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:26:5,21 1|1:35:15,20 ./.:31:17,14 +chr20 159495 . G GAATGGCATAAACT 60 . QNAME=HG002-S9-H1-000001F;QSTART=138469;QSTRAND=+;GCPCT=35;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.938694 GT:DP:AD 1|0:25:6,19 ./.:27:14,13 1|1:26:13,13 +chr20 159530 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138516;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:22,17 ./.:24:15,9 1|1:37:12,25 +chr20 159639 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=113173;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:44:21,23 1|1:22:6,16 ./.:32:16,16 +chr20 159755 . TTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138742;QSTRAND=+;GCPCT=25;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD 1|1:29:17,12 1|1:24:7,17 1|1:38:18,20 +chr20 159864 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=138847;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:15,6 ./.:41:18,23 1|1:34:16,18 +chr20 159865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=138848;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:13,8 ./.:37:16,21 1|1:39:16,23 +chr20 159952 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=138936;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:44:20,24 ./.:27:6,21 1|1:23:15,8 +chr20 160054 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139036;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:24:19,5 ./.:48:23,25 1|1:19:11,8 +chr20 160212 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139194;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:9,21 ./.:42:20,22 1|1:25:16,9 +chr20 160282 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139264;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:14,18 ./.:41:17,24 1|1:24:17,7 +chr20 160312 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139294;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:14,16 ./.:33:20,13 1|1:28:10,18 +chr20 160384 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:19,15 ./.:30:10,20 1|1:22:17,5 +chr20 160388 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139370;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:29:24,5 ./.:31:20,11 1|1:22:15,7 +chr20 160408 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139390;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:16,19 ./.:20:12,8 1|1:35:10,25 +chr20 160413 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139395;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:14:8,6 ./.:26:10,16 1|1:20:6,14 +chr20 160433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139415;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:16,21 ./.:18:9,9 1|1:32:11,21 +chr20 160558 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139540;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:24,18 ./.:29:12,17 1|0:36:25,11 +chr20 160625 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=139607;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:22:7,15 ./.:35:11,24 1|1:34:10,24 +chr20 160727 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139709;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:46:25,21 ./.:24:14,10 1|1:27:21,6 +chr20 160731 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139713;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:9,22 ./.:40:22,18 1|1:18:8,10 +chr20 160873 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139855;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:28:19,9 ./.:29:9,20 1|1:23:5,18 +chr20 160889 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=139871;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:13,16 ./.:20:12,8 1|1:31:10,21 +chr20 160956 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=139938;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:19:11,8 ./.:28:19,9 1|1:32:18,14 +chr20 160967 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=139949;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:29:20,9 ./.:38:22,16 1|1:17:10,7 +chr20 161128 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140110;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:12,18 ./.:28:11,17 1|1:20:10,10 +chr20 161181 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140163;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:8,9 ./.:41:24,17 1|1:32:7,25 +chr20 161221 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140203;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:32:16,16 ./.:15:7,8 1|1:19:14,5 +chr20 161380 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140362;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:15:8,7 1|1:36:17,19 1|1:23:18,5 +chr20 161451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140433;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:9,21 ./.:25:13,12 1|1:32:16,16 +chr20 161571 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140553;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:22:12,10 ./.:17:8,9 1|1:26:20,6 +chr20 161588 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140570;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:18:5,13 1|1:45:22,23 1|1:39:19,20 +chr20 161621 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140603;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:27:6,21 ./.:15:9,6 1|1:29:9,20 +chr20 161638 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140620;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:34:12,22 1|1:37:13,24 1|1:33:25,8 +chr20 161698 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140680;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:18,25 ./.:34:18,16 1|1:38:17,21 +chr20 161730 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=140712;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:11,21 ./.:35:15,20 1|1:28:16,12 +chr20 161734 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=140716;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:45:20,25 ./.:31:21,10 1|1:26:12,14 +chr20 161770 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140752;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:19:7,12 ./.:39:16,23 1|1:29:12,17 +chr20 161914 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=140896;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:12,20 ./.:25:20,5 1|1:20:7,13 +chr20 161918 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=115449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:25:5,20 1|1:27:16,11 ./.:40:17,23 +chr20 161991 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=140973;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:28:22,6 ./.:29:16,13 1|1:32:21,11 +chr20 162151 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141133;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:40:19,21 1|1:25:8,17 1|1:32:8,24 +chr20 162224 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141206;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:15,19 ./.:21:16,5 1|1:30:12,18 +chr20 162225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141207;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:17,25 ./.:28:13,15 1|1:23:10,13 +chr20 162228 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=141210;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:26:10,16 ./.:27:5,22 1|1:41:21,20 +chr20 162268 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=141250;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:19,18 ./.:44:25,19 1|1:42:23,19 +chr20 162455 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=141437;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:15:7,8 ./.:39:20,19 1|1:18:6,12 +chr20 162806 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=116337;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:48:24,24 1|1:31:12,19 ./.:30:24,6 +chr20 162854 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141836;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:44:25,19 ./.:24:14,10 1|1:23:11,12 +chr20 162932 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=141914;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:19:14,5 ./.:39:25,14 1|1:36:11,25 +chr20 163082 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=142064;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:45:22,23 ./.:16:8,8 1|1:28:10,18 +chr20 163113 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142095;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:14:7,7 ./.:29:11,18 1|1:24:12,12 +chr20 163277 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=142259;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:15:9,6 1|1:49:25,24 1|1:46:24,22 +chr20 163741 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117272;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:9,14 1|1:26:7,19 ./.:28:10,18 +chr20 163894 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117425;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:30:18,12 1|1:26:18,8 ./.:17:6,11 +chr20 163919 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117450;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:45:22,23 1|1:22:14,8 ./.:35:15,20 +chr20 163929 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=117460;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:35:14,21 1|1:34:25,9 ./.:31:21,10 +chr20 164191 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=117723;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:35:19,16 1|1:25:18,7 ./.:36:17,19 +chr20 164243 . CCTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117776;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:30:7,23 1|1:28:9,19 ./.:31:20,11 +chr20 164258 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=117787;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:28:21,7 1|1:26:20,6 ./.:26:5,21 +chr20 164569 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=143551;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:22,15 1|1:37:20,17 1|1:30:21,9 +chr20 164616 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=118146;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD 0|1:17:5,12 1|1:25:11,14 ./.:23:11,12 +chr20 164772 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=118302;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:44:21,23 1|1:20:13,7 ./.:40:20,20 +chr20 165108 . C CACAT 60 . QNAME=cluster23_scaffold_3;QSTART=25546750;QSTRAND=-;GCPCT=40;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:31:19,12 ./.:39:20,19 1|1:35:16,19 +chr20 165108 . C CAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=144091;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD 1|0:27:9,18 ./.:26:9,17 ./.:24:9,15 +chr20 165108 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=118638;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:30:20,10 1|1:22:12,10 ./.:26:9,17 +chr20 165212 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=144196;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:23:12,11 ./.:43:24,19 1|1:26:16,10 +chr20 166310 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=145294;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:16,25 ./.:45:25,20 1|1:14:6,8 +chr20 166354 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=119884;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:40:15,25 1|1:29:20,9 ./.:37:13,24 +chr20 166856 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=145840;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:9,21 ./.:33:25,8 1|1:44:23,21 +chr20 166960 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=145945;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:40:20,20 ./.:30:15,15 1|1:46:21,25 +chr20 167044 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146027;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:10,7 ./.:33:15,18 1|1:42:23,19 +chr20 167104 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25529412;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:42:18,24 ./.:33:25,8 0|1:15:10,5 +chr20 167274 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=146257;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:29:16,13 ./.:36:21,15 1|1:36:22,14 +chr20 167276 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146259;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:10,25 ./.:38:15,23 1|1:25:12,13 +chr20 167443 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146426;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:20:14,6 1|1:15:6,9 1|1:35:12,23 +chr20 167839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=146822;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:21:7,14 1|1:26:5,21 1|1:23:10,13 +chr20 168062 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=147045;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:30:8,22 ./.:25:14,11 1|1:26:16,10 +chr20 168478 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=147462;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:31:11,20 ./.:16:8,8 1|1:36:25,11 +chr20 168766 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=122296;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:29:18,11 1|1:29:19,10 ./.:30:13,17 +chr20 169334 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=122864;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:20:8,12 1|1:36:17,19 ./.:25:15,10 +chr20 170008 . CTACA C 60 . QNAME=cluster23_scaffold_2;QSTART=25526509;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:40:15,25 ./.:31:10,21 0|1:23:12,11 +chr20 170689 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=124219;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:27:9,18 1|1:25:10,15 ./.:27:18,9 +chr20 171892 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125422;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:29:6,23 1|1:22:8,14 ./.:40:17,23 +chr20 171929 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125459;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:22,14 1|1:39:15,24 0|1:36:11,25 +chr20 172156 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=125686;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:20:8,12 1|0:28:20,8 ./.:21:8,13 +chr20 172258 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25539602;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:19,16 ./.:31:9,22 1|0:36:23,13 +chr20 172331 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=125861;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:26:13,13 1|1:42:23,19 0|1:19:13,6 +chr20 172351 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=125881;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:41:16,25 1|1:32:7,25 0|1:27:19,8 +chr20 172626 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126156;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:27:22,5 1|1:16:5,11 0|1:34:24,10 +chr20 172657 . T TTC 60 . QNAME=HG002-S9-H2-000001F;QSTART=126188;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 0|1:40:25,15 1|1:38:16,22 0|1:19:5,14 +chr20 172752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=126284;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:37:22,15 1|1:36:11,25 ./.:41:24,17 +chr20 172789 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25523730;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:11,18 ./.:38:20,18 0|1:36:25,11 +chr20 173036 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25523483;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:24,22 ./.:17:12,5 0|1:36:22,14 +chr20 173050 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=126582;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:13,19 1|1:16:6,10 ./.:32:12,20 +chr20 173133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25523386;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:12,16 ./.:40:24,16 0|1:38:14,24 +chr20 173215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=152197;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:12,17 ./.:15:10,5 ./.:34:12,22 +chr20 173791 . CCTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25522728;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:32:23,9 ./.:44:19,25 0|1:44:19,25 +chr20 173973 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=127505;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:35:24,11 1|1:42:17,25 ./.:35:11,24 +chr20 174069 . G A 60 . QNAME=cluster19_000000F;QSTART=133216;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:16,20 0|1:19:12,7 ./.:49:24,25 +chr20 174270 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=25522252;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:40:16,24 ./.:15:10,5 0|1:26:6,20 +chr20 174280 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25522243;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:45:24,21 +chr20 174737 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521786;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:10,24 ./.:18:5,13 0|1:31:7,24 +chr20 174986 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521537;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:20,12 ./.:48:23,25 0|1:44:24,20 +chr20 175210 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521313;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:24:11,13 ./.:38:16,22 0|1:23:11,12 +chr20 175239 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25521284;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:17,6 ./.:25:8,17 0|1:41:16,25 +chr20 175269 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=128801;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:28:8,20 1|1:23:13,10 0|1:36:12,24 +chr20 175314 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=128846;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:28:18,10 1|1:19:13,6 ./.:42:17,25 +chr20 175375 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25521148;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:14,16 ./.:26:15,11 0|1:38:21,17 +chr20 175501 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25521022;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:27:10,17 ./.:31:19,12 0|1:18:7,11 +chr20 175524 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=129056;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 0|1:30:23,7 1|1:21:13,8 0|1:25:16,9 +chr20 175532 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129064;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:43:25,18 1|1:36:21,15 0|1:28:17,11 +chr20 175563 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520960;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:14:5,9 ./.:29:6,23 0|1:18:5,13 +chr20 175565 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520958;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:15:8,7 ./.:29:20,9 0|1:37:24,13 +chr20 175595 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25520928;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:26:15,11 ./.:35:21,14 0|1:30:17,13 +chr20 175658 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520865;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:32:25,7 ./.:16:10,6 0|1:47:25,22 +chr20 175659 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520864;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:18:10,8 ./.:33:12,21 0|1:29:19,10 +chr20 175676 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25520847;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:18,8 ./.:38:15,23 0|1:35:14,21 +chr20 175688 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129220;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:30:13,17 1|1:38:17,21 0|1:24:18,6 +chr20 175689 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129221;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:28:7,21 1|1:31:13,18 0|1:27:5,22 +chr20 175813 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520710;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:30:25,5 ./.:35:18,17 0|1:26:17,9 +chr20 175893 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129425;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:19,19 1|1:34:14,20 0|1:23:17,6 +chr20 175897 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129429;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:20:11,9 1|1:31:11,20 0|1:46:25,21 +chr20 176011 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=129543;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:35:25,10 1|1:40:16,24 ./.:42:21,21 +chr20 176015 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=129547;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:29:22,7 1|1:26:10,16 ./.:30:18,12 +chr20 176015 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520508;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:10,15 ./.:36:18,18 0|1:38:19,19 +chr20 176128 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25520395;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:12,16 ./.:18:5,13 0|1:41:17,24 +chr20 176156 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25520367;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:25:20,5 ./.:31:17,14 0|1:37:24,13 +chr20 176325 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25520198;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:27:14,13 ./.:29:9,20 0|1:39:23,16 +chr20 176400 . G GCCC 60 . QNAME=cluster23_scaffold_2;QSTART=25520120;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.405639 GT:DP:AD ./.:42:25,17 ./.:19:10,9 0|1:20:7,13 +chr20 176406 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25520114;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:10,21 ./.:21:5,16 0|1:25:9,16 +chr20 176516 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130048;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:14,22 1|1:35:19,16 0|1:23:12,11 +chr20 176631 . C T 60 . QNAME=cluster19_000000F;QSTART=135778;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:20,16 0|1:29:24,5 ./.:25:8,17 +chr20 176881 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=130413;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:24:13,11 1|0:31:23,8 ./.:39:14,25 +chr20 177105 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=130637;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:26:6,20 1|1:17:6,11 0|1:18:9,9 +chr20 177210 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25519310;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:25:20,5 ./.:23:18,5 0|1:40:19,21 +chr20 177334 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519186;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:15,18 ./.:47:24,23 0|1:23:5,18 +chr20 177335 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=130867;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:27:16,11 1|1:18:9,9 0|1:18:13,5 +chr20 177343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25519177;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:38:22,16 ./.:28:7,21 0|1:29:14,15 +chr20 177473 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=131005;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:37:17,20 1|1:43:18,25 0|1:29:23,6 +chr20 177674 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=131206;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:37:17,20 1|1:20:9,11 ./.:25:19,6 +chr20 177749 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25518771;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:21,5 ./.:23:7,16 0|1:20:5,15 +chr20 177793 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=131325;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:34:20,14 1|1:25:14,11 ./.:32:7,25 +chr20 177854 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=131386;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:35:12,23 1|1:31:19,12 0|1:20:11,9 +chr20 178043 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518477;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:20:15,5 ./.:29:19,10 0|1:27:14,13 +chr20 178049 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25518471;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:22:5,17 ./.:35:16,19 0|1:28:15,13 +chr20 178343 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25518177;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:15,13 ./.:26:16,10 0|1:43:21,22 +chr20 178456 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25518064;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:7,22 ./.:42:20,22 0|1:28:11,17 +chr20 178604 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25517916;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:22:7,15 ./.:40:24,16 0|1:40:17,23 +chr20 178648 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=132180;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:20:5,15 1|1:27:12,15 ./.:27:6,21 +chr20 178883 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25517637;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:33:19,14 ./.:21:9,12 0|1:22:16,6 +chr20 179104 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25517416;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:11,22 ./.:28:6,22 0|1:37:16,21 +chr20 179470 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=133003;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:25:8,17 1|1:27:5,22 0|1:42:25,17 +chr20 179567 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133100;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:26:8,18 1|1:24:11,13 0|1:27:20,7 +chr20 179575 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25516944;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:16,25 ./.:23:9,14 0|1:38:20,18 +chr20 179892 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=133425;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:16,17 1|1:29:21,8 ./.:26:6,20 +chr20 179910 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=133443;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:22:17,5 1|1:30:20,10 0|1:44:20,24 +chr20 180809 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=134342;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:25,8 1|1:46:24,22 0|1:49:25,24 +chr20 180861 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515658;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:28:7,21 ./.:41:17,24 0|1:33:25,8 +chr20 180945 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25515574;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:16,5 ./.:28:8,20 0|1:23:7,16 +chr20 181095 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515424;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:19:12,7 ./.:27:17,10 0|1:12:7,5 +chr20 181461 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25515058;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:28:7,21 ./.:15:6,9 0|1:31:8,23 +chr20 181576 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514943;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:40:15,25 ./.:19:9,10 0|1:35:20,15 +chr20 181650 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25514869;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:15,17 ./.:23:13,10 0|1:17:10,7 +chr20 181651 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25514868;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:38:16,22 ./.:16:7,9 0|1:28:21,7 +chr20 181704 . AAAAT A 60 . QNAME=cluster23_scaffold_2;QSTART=25514815;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.360964 GT:DP:AD ./.:37:24,13 ./.:38:17,21 0|1:38:25,13 +chr20 182042 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=135575;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:22,14 1|1:38:15,23 ./.:27:11,16 +chr20 182056 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25514467;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:21,13 ./.:36:13,23 0|1:32:13,19 +chr20 182966 . A AAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=136500;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:22:7,15 1|1:33:25,8 0|1:39:14,25 +chr20 182982 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25513539;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:50:25,25 ./.:31:8,23 0|1:35:18,17 +chr20 183100 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25513419;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD ./.:43:22,21 ./.:22:6,16 0|1:26:20,6 +chr20 183100 . T TACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=136636;QSTRAND=+;GCPCT=42;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.724408 GT:DP:AD 0|1:46:22,24 1|1:24:19,5 ./.:23:14,9 +chr20 183442 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25513077;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:20,22 ./.:26:11,15 0|1:32:22,10 +chr20 183617 . G GGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25512867;QSTRAND=-;SVTYPE=INS;SVLEN=35;GCPCT=22;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.382102 GT:DP:AD ./.:35:16,19 ./.:32:20,12 0/1:24:11,13 +chr20 183638 . G GAAAAC 60 . QNAME=cluster19_000000F;QSTART=142795;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.625815 GT:DP:AD ./.:30:6,24 0|1:45:25,20 ./.:40:19,21 +chr20 183643 . G C 60 . QNAME=cluster19_000000F;QSTART=142804;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:17,20 0|1:33:24,9 ./.:27:12,15 +chr20 183643 . G GAAAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=137185;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.625815 GT:DP:AD 0|1:41:22,19 1|0:40:25,15 ./.:30:17,13 +chr20 183699 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=137245;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:23,8 1|1:37:21,16 ./.:47:24,23 +chr20 183795 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512689;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:18,5 ./.:31:7,24 0|1:49:24,25 +chr20 184483 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25512001;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:10,22 ./.:43:23,20 0|1:30:19,11 +chr20 184792 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25511692;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:18:9,9 ./.:23:7,16 0|1:38:13,25 +chr20 184838 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25511646;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:42:25,17 ./.:28:15,13 0|1:17:7,10 +chr20 185161 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25511323;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:13,16 ./.:21:11,10 0|1:31:11,20 +chr20 185267 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=138813;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:22,9 1|1:49:24,25 0|1:44:19,25 +chr20 185522 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25510962;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:24,17 ./.:47:24,23 0|1:23:7,16 +chr20 185547 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25510937;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:23:11,12 ./.:48:24,24 0|1:30:22,8 +chr20 185835 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25510648;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:33:20,13 ./.:19:6,13 0|1:37:18,19 +chr20 186086 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139632;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:24:18,6 1|1:43:22,21 ./.:30:15,15 +chr20 186099 . C CAA 60 . QNAME=cluster23_scaffold_2;QSTART=25510382;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:22:6,16 ./.:21:14,7 0|1:41:25,16 +chr20 186183 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=139729;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:34:18,16 1|1:25:7,18 ./.:24:7,17 +chr20 186577 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509904;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:12,8 ./.:18:7,11 0|1:23:7,16 +chr20 186669 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140215;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:40:23,17 1|1:29:21,8 ./.:31:14,17 +chr20 186684 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25509797;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:17,7 ./.:28:9,19 0|1:28:15,13 +chr20 186790 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=140336;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:28:18,10 1|1:10:5,5 0|1:23:10,13 +chr20 186800 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509681;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:28:19,9 ./.:19:13,6 0|1:31:8,23 +chr20 186814 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25509667;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:17,7 ./.:46:21,25 0|1:39:21,18 +chr20 187006 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25509475;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:41:16,25 ./.:33:25,8 0|1:35:22,13 +chr20 187133 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25509348;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:17,13 ./.:41:24,17 0|1:46:23,23 +chr20 187259 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25509222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:18,14 ./.:28:13,15 0|1:34:22,12 +chr20 187379 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25509102;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:15,19 ./.:28:13,15 0|1:22:9,13 +chr20 187439 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=140985;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:33:14,19 1|1:26:15,11 ./.:24:13,11 +chr20 187498 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508983;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:5,15 ./.:18:13,5 0|1:35:21,14 +chr20 187600 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25508881;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:15:7,8 ./.:36:18,18 0|1:23:10,13 +chr20 187825 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141371;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:12,19 1|1:16:8,8 ./.:41:24,17 +chr20 188087 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=141633;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:20:13,7 1|1:41:23,18 0|1:25:15,10 +chr20 188490 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25507991;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:18:7,11 ./.:18:7,11 0|1:26:21,5 +chr20 189060 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=142606;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:14:8,6 1|1:42:18,24 ./.:30:6,24 +chr20 189354 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=142900;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:24:9,15 1|1:21:11,10 0|1:34:21,13 +chr20 189473 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25507008;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:17,16 ./.:34:23,11 0|1:48:25,23 +chr20 189948 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=143494;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:23:6,17 1|1:40:19,21 0|1:26:21,5 +chr20 190001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=143547;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:14:6,8 1|1:44:20,24 0|1:29:10,19 +chr20 190548 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=144094;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:34:13,21 1|1:41:18,23 ./.:37:19,18 +chr20 190675 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25505805;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:26:6,20 ./.:27:9,18 0|1:24:11,13 +chr20 190675 . C CTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=144222;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 0|1:23:7,16 1|1:36:25,11 ./.:45:20,25 +chr20 190950 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144498;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:8,18 1|1:28:20,8 ./.:45:24,21 +chr20 190986 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=144534;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:37:24,13 1|1:42:21,21 ./.:33:23,10 +chr20 191069 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25505411;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:24,11 ./.:24:13,11 0|1:24:5,19 +chr20 191221 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=170203;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:20,23 ./.:25:7,18 ./.:44:21,23 +chr20 191726 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25520132;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.459148 GT:DP:AD ./.:32:18,14 ./.:17:5,12 1|0:23:15,8 +chr20 191726 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=145275;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 0|1:33:20,13 1|1:34:19,15 ./.:24:13,11 +chr20 191726 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25504754;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:16:8,8 ./.:41:22,19 0|1:43:24,19 +chr20 191877 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=145424;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:38:25,13 1|1:48:25,23 0|1:40:16,24 +chr20 192100 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=145647;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:21:8,13 1|1:23:17,6 0|1:32:16,16 +chr20 193110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=146657;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 0|1:30:23,7 1|1:12:5,7 0|1:22:16,6 +chr20 193428 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=146975;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:35:16,19 1|1:30:19,11 0|1:27:19,8 +chr20 193735 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502747;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:17:8,9 ./.:29:23,6 0|1:39:19,20 +chr20 193942 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25502540;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:26:18,8 ./.:19:10,9 0|1:20:8,12 +chr20 193996 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25502486;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:23,14 ./.:43:22,21 0|1:39:17,22 +chr20 194746 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=148293;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:11,13 1|1:38:19,19 0|1:27:12,15 +chr20 195745 . C CGT 60 . QNAME=cluster23_scaffold_2;QSTART=25500735;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:41:19,22 ./.:25:8,17 0|1:26:12,14 +chr20 195745 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=25516113;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:39:19,20 ./.:43:19,24 1|0:20:6,14 +chr20 195745 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=149293;QSTRAND=+;GCPCT=57;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.724408 GT:DP:AD 0|1:22:8,14 1|1:25:13,12 ./.:42:24,18 +chr20 195977 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25500503;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:20:8,12 ./.:39:25,14 0|1:45:22,23 +chr20 196106 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25515756;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:18:7,11 ./.:35:23,12 1|0:28:16,12 +chr20 196584 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=175566;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:29:19,10 ./.:23:17,6 1|1:20:7,13 +chr20 196609 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=175591;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:20:13,7 ./.:20:14,6 1|0:20:15,5 +chr20 198088 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25513774;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:40:24,16 ./.:34:23,11 1|0:45:23,22 +chr20 198171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177153;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:27:19,8 ./.:38:17,21 1|1:23:18,5 +chr20 198174 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=177156;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:11,23 ./.:42:22,20 1|0:14:8,6 +chr20 198215 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177197;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:20,13 ./.:31:13,18 1|1:33:9,24 +chr20 198433 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25498047;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:7,24 ./.:27:20,7 0|1:25:14,11 +chr20 198814 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=177796;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:31:18,13 ./.:17:7,10 1|0:21:9,12 +chr20 198921 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=177903;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:15:9,6 ./.:12:5,7 1|1:31:8,23 +chr20 199123 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=178105;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:18,16 ./.:33:19,14 1|0:36:18,18 +chr20 199139 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=178122;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:20:12,8 ./.:48:24,24 ./.:24:9,15 +chr20 199139 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25512721;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:18:5,13 ./.:33:9,24 1|1:44:19,25 +chr20 199741 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25496737;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:44:20,24 ./.:34:9,25 0|1:15:10,5 +chr20 200997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=179980;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:28:10,18 ./.:34:12,22 1|0:26:12,14 +chr20 201076 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25510784;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:20,7 ./.:33:18,15 1|0:35:12,23 +chr20 201326 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180309;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:36:14,22 ./.:25:20,5 1|0:36:17,19 +chr20 201372 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180355;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:20,19 ./.:20:11,9 1|1:41:23,18 +chr20 201418 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=180401;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:28:17,11 ./.:38:18,20 1|0:31:24,7 +chr20 201525 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25494953;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:16,20 ./.:15:10,5 0|1:43:21,22 +chr20 201908 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25494570;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:19:6,13 ./.:27:20,7 0|1:17:12,5 +chr20 201932 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25494545;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:17:10,7 ./.:30:16,14 0|1:21:10,11 +chr20 201932 . C CAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=180916;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.360964 GT:DP:AD 1|0:31:17,14 ./.:28:9,19 1|0:34:16,18 +chr20 201932 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=155474;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:29:21,8 ./.:24:17,7 ./.:30:7,23 +chr20 202581 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=181568;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:24:14,10 ./.:39:24,15 1|0:21:8,13 +chr20 203580 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182567;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:13,21 ./.:13:7,6 1|0:37:22,15 +chr20 203602 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182589;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:32:18,14 ./.:24:8,16 ./.:36:24,12 +chr20 203620 . TCCCTCCC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=182608;QSTRAND=+;GCPCT=75;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD 1|0:32:8,24 ./.:22:5,17 1|0:28:5,23 +chr20 203847 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=182827;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:26:18,8 ./.:34:15,19 1|0:48:24,24 +chr20 204090 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=183070;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:6,15 ./.:15:10,5 1|0:30:13,17 +chr20 205285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=184265;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:44:23,21 ./.:46:23,23 1|0:42:21,21 +chr20 205764 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=184744;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:22:6,16 ./.:38:15,23 1|1:22:17,5 +chr20 206102 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25490375;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:18:6,12 ./.:49:25,24 0|1:29:18,11 +chr20 206175 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=185156;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:40:24,16 ./.:13:5,8 ./.:28:10,18 +chr20 206175 . TAAAA T 60 . QNAME=cluster23_scaffold_2;QSTART=25490302;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.360964 GT:DP:AD ./.:39:23,16 ./.:28:19,9 0|1:39:21,18 +chr20 206197 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490284;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:37:15,22 ./.:16:9,7 0|1:33:21,12 +chr20 206446 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25490035;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:12:5,7 ./.:21:7,14 0|1:40:19,21 +chr20 207202 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=186184;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:36:11,25 ./.:25:17,8 1|1:34:21,13 +chr20 207307 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489173;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:10,15 ./.:39:22,17 0|1:25:12,13 +chr20 207389 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=186371;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:19,18 ./.:33:18,15 1|1:32:19,13 +chr20 207466 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25489014;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:14,22 ./.:31:12,19 0|1:21:14,7 +chr20 208792 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=187775;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:39:21,18 ./.:39:22,17 1|1:45:20,25 +chr20 209694 . A C 60 . QNAME=cluster23_scaffold_2;QSTART=25486787;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:21,22 ./.:25:7,18 0|1:40:21,19 +chr20 210024 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25486457;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:22,5 ./.:29:6,23 0|1:44:22,22 +chr20 211156 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190137;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:13:5,8 ./.:24:7,17 1|1:28:19,9 +chr20 211168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190149;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:26:10,16 ./.:25:19,6 1|1:27:12,15 +chr20 211428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=190409;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:22,21 ./.:22:7,15 1|1:31:7,24 +chr20 212919 . AC A 60 . QNAME=cluster23_scaffold_2;QSTART=25483562;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:34:21,13 ./.:18:10,8 0|1:30:15,15 +chr20 212994 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=166535;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:36:16,20 ./.:47:25,22 0|1:24:15,9 +chr20 213120 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25483361;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:15,22 ./.:32:7,25 0|1:38:15,23 +chr20 213126 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483355;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:36:25,11 ./.:16:5,11 0|1:35:19,16 +chr20 213223 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25483258;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:7,20 ./.:31:6,25 0|1:20:13,7 +chr20 213244 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25483237;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:30:17,13 ./.:17:5,12 0|1:21:5,16 +chr20 213641 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25498222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:22,20 ./.:39:20,19 1|0:43:18,25 +chr20 213649 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=192630;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,2,1;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:35:21,14 ./.:12:6,6 ./.:12:6,6 +chr20 213886 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=192867;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:23:11,12 ./.:26:16,10 ./.:27:20,7 +chr20 214444 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193425;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:42:20,22 ./.:25:12,13 ./.:28:15,13 +chr20 214461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193442;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:35:14,21 ./.:40:20,20 ./.:35:16,19 +chr20 214646 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193627;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:40:21,19 ./.:17:5,12 ./.:31:24,7 +chr20 214796 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=193778;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:34:14,20 ./.:30:21,9 ./.:24:10,14 +chr20 214824 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=193804;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:8,25 ./.:34:14,20 ./.:23:16,7 +chr20 214879 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=193859;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:8,14 ./.:40:25,15 ./.:30:21,9 +chr20 214962 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25481518;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD ./.:30:19,11 ./.:32:20,12 0|1:17:6,11 +chr20 215031 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25496832;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:17,13 ./.:26:18,8 1|0:29:6,23 +chr20 215055 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=194035;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:12,18 ./.:42:17,25 1|1:43:20,23 +chr20 215963 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=194943;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:20:13,7 ./.:17:8,9 ./.:27:16,11 +chr20 217163 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25479317;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:13,24 ./.:25:20,5 0|1:44:22,22 +chr20 217714 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=25478766;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.760964 GT:DP:AD ./.:14:8,6 ./.:16:7,9 0|1:24:5,19 +chr20 217754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=196734;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:37:21,16 1|1:31:18,13 0|1:18:9,9 +chr20 217756 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25494107;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:11,14 ./.:27:7,20 1|0:41:20,21 +chr20 219501 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=198481;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:26:15,11 ./.:32:20,12 0|1:27:6,21 +chr20 220972 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=25475512;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:28:12,16 ./.:14:8,6 0|1:41:17,24 +chr20 221511 . GGGAA G 60 . QNAME=cluster23_scaffold_3;QSTART=25490352;QSTRAND=-;GCPCT=60;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.485475 GT:DP:AD ./.:19:10,9 ./.:18:5,13 1|1:37:12,25 +chr20 224189 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=203169;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:9,23 ./.:41:16,25 0|1:26:12,14 +chr20 225761 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204741;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:22:5,17 ./.:35:16,19 0|1:33:14,19 +chr20 225955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=204935;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:28:22,6 1|1:31:19,12 1|1:37:25,12 +chr20 226775 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=205755;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:25:12,13 ./.:36:22,14 0|1:46:23,23 +chr20 227248 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=206228;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:14:9,5 ./.:17:11,6 ./.:38:16,22 +chr20 227262 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25484605;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:15,18 ./.:25:9,16 1|0:16:11,5 +chr20 227527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=206507;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:20,21 ./.:44:23,21 1|1:23:17,6 +chr20 227692 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25484175;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:15,13 ./.:38:19,19 1|0:32:14,18 +chr20 227704 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=206684;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:31:6,25 ./.:29:22,7 1|1:29:7,22 +chr20 227705 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484162;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:27:14,13 ./.:26:17,9 1|0:35:23,12 +chr20 227706 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484161;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:5,16 ./.:27:11,16 1|0:12:5,7 +chr20 227707 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25484160;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:13,16 ./.:25:7,18 1|0:24:5,19 +chr20 227909 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25483958;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:13:6,7 ./.:32:19,13 1|0:22:8,14 +chr20 228044 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25483823;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:14,14 ./.:20:8,12 1|0:38:17,21 +chr20 228258 . GCTTCTAATGTTTTTAT G 60 . QNAME=cluster23_scaffold_2;QSTART=25468232;QSTRAND=-;GCPCT=23;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.809197 GT:DP:AD ./.:49:25,24 ./.:19:12,7 0|1:28:5,23 +chr20 228763 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25467743;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:20,19 ./.:38:17,21 0|1:24:7,17 +chr20 229210 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25482657;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:23,16 ./.:27:5,22 1|0:27:10,17 +chr20 229265 . T TCTC 60 . QNAME=cluster23_scaffold_3;QSTART=25482599;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:33:14,19 ./.:29:9,20 1|0:38:25,13 +chr20 229420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=208400;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:17,16 ./.:24:9,15 ./.:38:24,14 +chr20 229665 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25482199;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:15:7,8 ./.:37:18,19 1|1:38:17,21 +chr20 229898 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25481966;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:19,11 ./.:36:14,22 1|0:32:13,19 +chr20 229993 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481871;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:8,18 ./.:31:22,9 1|0:47:24,23 +chr20 230118 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25466388;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:33:22,11 ./.:18:7,11 0|1:22:8,14 +chr20 230234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=209214;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:27:9,18 ./.:42:18,24 ./.:29:20,9 +chr20 230273 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481591;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:47:22,25 ./.:28:17,11 1|0:32:9,23 +chr20 230354 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25481510;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:21,6 ./.:38:15,23 1|0:38:18,20 +chr20 230514 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25481350;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:32:18,14 ./.:20:14,6 1|0:31:23,8 +chr20 230790 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25481074;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:9,18 ./.:44:21,23 1|0:18:9,9 +chr20 230868 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=209848;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:31:7,24 ./.:25:20,5 0|1:22:16,6 +chr20 230923 . T C 60 . QNAME=cluster19_000000F;QSTART=190079;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:12,21 0|1:20:13,7 ./.:41:20,21 +chr20 231070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=210050;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:23,16 ./.:27:6,21 0|1:28:10,18 +chr20 231318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210298;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:26:9,17 ./.:27:13,14 ./.:28:5,23 +chr20 231710 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=210690;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:10,22 ./.:46:24,22 1|1:22:16,6 +chr20 231898 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=185439;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:29:6,23 1|1:39:17,22 1|0:44:24,20 +chr20 231900 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=185441;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:10,13 1|1:40:19,21 1|0:34:17,17 +chr20 232009 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479855;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:10,17 ./.:23:16,7 1|0:42:24,18 +chr20 232033 . A AAAAT 60 . QNAME=cluster19_000000F;QSTART=191190;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.360964 GT:DP:AD ./.:24:12,12 0|1:28:12,16 0|1:39:16,23 +chr20 232033 . A AAAATAAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=211014;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.382102 GT:DP:AD 1|1:33:15,18 ./.:22:14,8 ./.:19:12,7 +chr20 232033 . A AAAATAAATAAAT 60 . QNAME=cluster19_000000F;QSTART=25530755;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.389675 GT:DP:AD ./.:26:10,16 1|0:26:11,15 1|0:39:16,23 +chr20 232468 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25479382;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD ./.:36:23,13 ./.:33:19,14 1|0:44:23,21 +chr20 232484 . TG T 60 . QNAME=cluster23_scaffold_3;QSTART=25479366;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:43:25,18 ./.:32:7,25 1|0:26:11,15 +chr20 232614 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25479237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:38:14,24 ./.:19:5,14 1|0:34:24,10 +chr20 232882 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25478969;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:18:6,12 ./.:29:12,17 1|0:32:19,13 +chr20 233198 . TGACGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25478653;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.896241 GT:DP:AD ./.:30:7,23 ./.:31:12,19 1|0:20:7,13 +chr20 233213 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25478643;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:15,17 ./.:28:9,19 1|0:34:23,11 +chr20 233246 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25478610;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:17:12,5 ./.:36:13,23 1|0:26:14,12 +chr20 233732 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=212720;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:13:8,5 1|0:26:15,11 1|1:31:25,6 +chr20 234020 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25477836;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:22,11 ./.:25:16,9 1|0:26:8,18 +chr20 234023 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25477833;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:24,12 ./.:36:18,18 1|0:26:11,15 +chr20 234144 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=213133;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:31:9,22 1|1:28:20,8 ./.:18:6,12 +chr20 234144 . CTTTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25477712;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.360964 GT:DP:AD ./.:30:13,17 ./.:24:17,7 1|0:36:15,21 +chr20 234239 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213226;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:15,11 ./.:27:22,5 ./.:37:16,21 +chr20 234441 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=213428;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:21:16,5 1|0:20:11,9 ./.:37:22,15 +chr20 234630 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477230;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:36:25,11 ./.:22:17,5 1|0:44:23,21 +chr20 234736 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25477124;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:6,14 ./.:17:12,5 1|0:37:19,18 +chr20 234758 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25477102;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:22,9 ./.:26:10,16 1|0:39:15,24 +chr20 234803 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25477057;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:20:8,12 ./.:32:18,14 1|0:43:22,21 +chr20 234949 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25476911;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:10,24 ./.:23:6,17 1|0:20:7,13 +chr20 235000 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25476860;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:16,25 ./.:25:9,16 1|0:32:14,18 +chr20 235023 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476837;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:9,21 ./.:30:21,9 1|0:31:14,17 +chr20 235274 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25461228;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:21:13,8 ./.:27:20,7 0|1:49:25,24 +chr20 235380 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25476480;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:32:18,14 ./.:20:9,11 1|0:23:10,13 +chr20 235457 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476403;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:21:12,9 ./.:34:16,18 1|1:25:18,7 +chr20 235579 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476281;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:40:24,16 ./.:21:11,10 1|0:28:16,12 +chr20 235581 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25476279;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:45:23,22 ./.:16:5,11 1|0:34:9,25 +chr20 235682 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25476178;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:12,25 ./.:29:22,7 1|0:32:12,20 +chr20 236006 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25475854;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:31:6,25 ./.:29:18,11 1|0:29:15,14 +chr20 236109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=215096;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:16:7,9 1|1:38:17,21 1|1:18:11,7 +chr20 236170 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=215157;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:34:22,12 1|0:23:16,7 1|1:26:8,18 +chr20 236273 . CTAAG C 60 . QNAME=cluster23_scaffold_3;QSTART=25475587;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.960964 GT:DP:AD ./.:37:21,16 ./.:25:11,14 1|0:33:19,14 +chr20 236433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215420;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:41:22,19 1|0:29:19,10 0|1:39:25,14 +chr20 236640 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=215627;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:29:7,22 1|0:43:23,20 0|1:28:14,14 +chr20 236959 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=215947;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|1:44:19,25 1|0:15:7,8 ./.:31:25,6 +chr20 236959 . CTT C 60 . QNAME=cluster23_scaffold_3;QSTART=25474905;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:23:8,15 ./.:38:15,23 1|0:38:24,14 +chr20 237090 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25474776;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:14,19 ./.:37:12,25 1|0:26:12,14 +chr20 237210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=216198;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:29:21,8 1|1:25:15,10 1|1:26:19,7 +chr20 237614 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=216603;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|1:23:13,10 1|0:18:5,13 1|0:18:13,5 +chr20 238142 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25473723;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:31:19,12 ./.:29:8,21 1|1:27:17,10 +chr20 238370 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217359;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:41:20,21 1|0:19:7,12 1|1:25:9,16 +chr20 238458 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=217447;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:19:14,5 1|0:19:8,11 ./.:20:6,14 +chr20 238622 . ACAAGGT A 60 . QNAME=cluster23_scaffold_3;QSTART=25473243;QSTRAND=-;GCPCT=42;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.921185 GT:DP:AD ./.:33:24,9 ./.:49:24,25 1|1:41:22,19 +chr20 238634 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473237;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:19,12 ./.:26:18,8 1|1:37:20,17 +chr20 238645 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25473226;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:33:20,13 ./.:28:19,9 1|1:29:20,9 +chr20 238721 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=217710;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:49:25,24 1|0:22:6,16 ./.:38:18,20 +chr20 238845 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=217835;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:14:5,9 1|0:29:13,16 1|1:49:25,24 +chr20 239021 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25472849;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:22,18 ./.:43:19,24 1|1:36:17,19 +chr20 239041 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25457466;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:16:8,8 ./.:41:18,23 0|1:30:16,14 +chr20 239418 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218408;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:41:21,20 1|0:25:6,19 ./.:25:9,16 +chr20 239441 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25457065;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:18:10,8 ./.:33:21,12 0|1:33:11,22 +chr20 239444 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=218434;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:10:5,5 1|0:24:16,8 ./.:24:18,6 +chr20 239451 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218441;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:18:5,13 1|0:12:6,6 ./.:38:13,25 +chr20 239556 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=218546;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:20:7,13 1|0:29:11,18 1|1:29:15,14 +chr20 239563 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=218553;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:48:24,24 1|0:21:11,10 1|1:33:25,8 +chr20 239613 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25456893;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:26:19,7 ./.:35:19,16 0|1:15:7,8 +chr20 239649 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25472221;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:17:12,5 ./.:39:16,23 1|1:31:25,6 +chr20 239662 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=25472208;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:16:6,10 ./.:32:22,10 1|1:20:12,8 +chr20 239803 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=218793;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:40:23,17 1|0:26:10,16 ./.:29:21,8 +chr20 239945 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471925;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:10:5,5 ./.:28:8,20 1|0:38:19,19 +chr20 239951 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25471919;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:29:21,8 ./.:31:24,7 1|1:24:12,12 +chr20 240008 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471862;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:10,14 ./.:24:16,8 1|1:39:20,19 +chr20 240075 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471793;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:17:8,9 ./.:32:19,13 1|1:39:22,17 +chr20 240075 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219066;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|1:34:25,9 1|0:24:8,16 ./.:40:22,18 +chr20 240116 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25471752;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:49:24,25 ./.:33:8,25 1|1:39:18,21 +chr20 240166 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471702;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:45:23,22 ./.:15:5,10 1|1:24:18,6 +chr20 240377 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25471491;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:6,18 ./.:32:21,11 1|1:16:8,8 +chr20 240458 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25471410;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:11,17 ./.:39:23,16 1|1:25:7,18 +chr20 240477 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=219471;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:48:25,23 1|0:25:10,15 ./.:38:21,17 +chr20 240477 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=25471389;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:40:18,22 ./.:17:11,6 1|0:37:16,21 +chr20 240477 . G GAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25456024;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:28:8,20 ./.:23:9,14 0|1:30:6,24 +chr20 240872 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25470994;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:26:12,14 ./.:34:23,11 1|1:36:25,11 +chr20 241191 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25470675;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:13,18 ./.:28:12,16 1|1:35:19,16 +chr20 241301 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=220295;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:23:11,12 1|0:31:17,14 1|1:30:24,6 +chr20 241898 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=220893;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:22:6,16 1|0:36:18,18 ./.:16:8,8 +chr20 241991 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25469875;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:14,25 ./.:32:17,15 1|1:38:20,18 +chr20 242033 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221028;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:26:14,12 1|0:44:23,21 ./.:36:20,16 +chr20 242067 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221062;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:40:25,15 1|0:39:21,18 ./.:40:20,20 +chr20 242195 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=221190;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:37:18,19 1|0:30:12,18 1|1:28:9,19 +chr20 242353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221348;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:23:6,17 1|0:22:9,13 ./.:29:18,11 +chr20 242531 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221526;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:26:13,13 1|0:19:11,8 ./.:27:21,6 +chr20 242614 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=221609;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:26:15,11 1|0:39:22,17 ./.:30:13,17 +chr20 242798 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=221793;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:25:15,10 1|0:24:13,11 ./.:27:9,18 +chr20 242897 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=221892;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:36:25,11 1|0:39:17,22 1|1:33:16,17 +chr20 243066 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25468800;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:15,6 ./.:26:6,20 1|1:38:16,22 +chr20 243217 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=222212;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:15,18 1|0:24:19,5 1|1:41:25,16 +chr20 243487 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=222482;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:25:15,10 1|0:33:13,20 ./.:25:8,17 +chr20 243532 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222527;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:29:5,24 1|0:19:11,8 1|1:23:13,10 +chr20 243817 . AAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25468049;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:23:5,18 ./.:17:11,6 1|1:14:7,7 +chr20 243818 . AG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=222814;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:30:7,23 1|0:29:24,5 ./.:31:17,14 +chr20 243960 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=222954;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:45:25,20 1|0:25:10,15 ./.:30:11,19 +chr20 244104 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223099;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 1|1:17:8,9 1|0:18:6,12 ./.:24:19,5 +chr20 244300 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223293;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:13:5,8 1|0:27:10,17 1|1:32:17,15 +chr20 244330 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=223323;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:32:13,19 1|0:41:21,20 1|1:17:9,8 +chr20 244417 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=223410;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:31:15,16 1|0:29:19,10 1|1:17:5,12 +chr20 244771 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223764;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:23,20 1|0:46:22,24 ./.:17:10,7 +chr20 244773 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25467095;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:20:8,12 ./.:20:8,12 1|1:33:14,19 +chr20 244803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=223796;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:27:13,14 1|0:40:21,19 ./.:29:5,24 +chr20 244964 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466904;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:6,24 ./.:21:7,14 1|1:21:15,6 +chr20 244981 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466887;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:12,21 ./.:34:14,20 1|1:30:11,19 +chr20 245127 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=224120;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:36:15,21 1|0:17:6,11 ./.:19:8,11 +chr20 245425 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466443;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:20:13,7 ./.:27:8,19 1|1:36:21,15 +chr20 245437 . GTGTATGTATA G 60 . QNAME=cluster23_scaffold_3;QSTART=25466431;QSTRAND=-;GCPCT=27;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.769742 GT:DP:AD ./.:30:21,9 ./.:22:11,11 1|1:39:17,22 +chr20 245443 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224437;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 1|0:47:24,23 ./.:29:19,10 ./.:30:22,8 +chr20 245443 . GTATATATA G 60 . QNAME=cluster19_000000F;QSTART=204603;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.696074 GT:DP:AD ./.:23:13,10 0|1:32:14,18 ./.:42:23,19 +chr20 245470 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224461;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:8,22 ./.:26:19,7 ./.:38:23,15 +chr20 245472 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=224463;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:20,15 ./.:14:6,8 1|0:26:9,17 +chr20 245474 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=199028;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:28:9,19 ./.:17:8,9 ./.:16:8,8 +chr20 245512 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25466366;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:31:20,11 ./.:30:18,12 1|1:32:25,7 +chr20 245789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25466089;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:31:25,6 ./.:42:20,22 1|1:20:12,8 +chr20 245803 . A G 60 . QNAME=cluster19_000000F;QSTART=204954;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:45:20,25 0|1:39:23,16 ./.:24:11,13 +chr20 245877 . G A 60 . QNAME=cluster19_000000F;QSTART=205028;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:27:5,22 0|1:49:24,25 ./.:31:9,22 +chr20 245928 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25465950;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:34:9,25 ./.:26:17,9 1|1:30:22,8 +chr20 246148 . T A 60 . QNAME=cluster19_000000F;QSTART=205299;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:36:21,15 0|1:24:13,11 1|1:29:20,9 +chr20 246383 . G A 60 . QNAME=cluster19_000000F;QSTART=205534;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:20:10,10 0|1:22:9,13 ./.:33:23,10 +chr20 246501 . G T 60 . QNAME=cluster19_000000F;QSTART=205652;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:36:22,14 0|1:18:9,9 ./.:35:22,13 +chr20 246605 . A G 60 . QNAME=cluster19_000000F;QSTART=205756;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:22:6,16 0|1:48:23,25 1|1:24:9,15 +chr20 246926 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25449587;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:25,10 ./.:45:22,23 0|1:24:14,10 +chr20 246986 . G GCACA 60 . QNAME=cluster23_scaffold_3;QSTART=25464888;QSTRAND=-;GCPCT=60;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.760964 GT:DP:AD ./.:25:8,17 ./.:32:13,19 1|1:33:13,20 +chr20 247326 . G A 60 . QNAME=cluster19_000000F;QSTART=206477;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:16,24 0|1:26:5,21 1|1:39:16,23 +chr20 247501 . AAAAGAAAAAG A 60 . QNAME=cluster23_scaffold_3;QSTART=25464373;QSTRAND=-;GCPCT=18;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.342019 GT:DP:AD ./.:43:22,21 ./.:49:25,24 1|0:27:19,8 +chr20 247505 . GAA G 60 . QNAME=cluster23_scaffold_2;QSTART=25449004;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:24:14,10 ./.:44:19,25 0|1:18:12,6 +chr20 247512 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448999;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:22:16,6 ./.:29:8,21 0|1:14:7,7 +chr20 247516 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25448995;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:14,12 ./.:27:9,18 0|1:14:9,5 +chr20 247516 . AAAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=226508;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.485475 GT:DP:AD 1|1:23:15,8 1|0:14:6,8 ./.:23:6,17 +chr20 247516 . AAAGGAAGG A 60 . QNAME=cluster19_000000F;QSTART=206668;QSTRAND=+;GCPCT=44;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.495538 GT:DP:AD ./.:27:15,12 0|1:28:5,23 ./.:36:23,13 +chr20 247565 . A C 60 . QNAME=cluster19_000000F;QSTART=206708;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:17,15 0|1:27:9,18 1|1:27:15,12 +chr20 247714 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25464170;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:29:12,17 ./.:30:25,5 1|1:27:11,16 +chr20 247936 . G A 60 . QNAME=cluster19_000000F;QSTART=207079;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:16,16 0|1:13:6,7 1|1:21:10,11 +chr20 248065 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463819;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:46:22,24 ./.:30:9,21 1|1:19:13,6 +chr20 248099 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25463785;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:19,14 ./.:16:11,5 1|1:34:16,18 +chr20 248173 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25463711;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:19,13 ./.:29:11,18 1|1:11:5,6 +chr20 248248 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25463636;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:14:7,7 ./.:36:16,20 1|1:18:12,6 +chr20 248357 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25463527;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:31:22,9 ./.:28:15,13 1|1:38:24,14 +chr20 248371 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25463513;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:5,20 ./.:20:14,6 1|1:22:11,11 +chr20 248716 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25447795;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:21,21 ./.:33:12,21 0|1:48:25,23 +chr20 248740 . C CA 60 . QNAME=cluster19_000000F;QSTART=207884;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:48:24,24 0|1:35:16,19 ./.:21:6,15 +chr20 248740 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25463144;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:22:8,14 ./.:28:5,23 1|0:22:17,5 +chr20 248815 . G A 60 . QNAME=cluster19_000000F;QSTART=207959;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:13,22 0|1:17:7,10 ./.:35:14,21 +chr20 248838 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25463047;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:15,10 ./.:18:12,6 1|0:45:24,21 +chr20 248854 . T C 60 . QNAME=cluster19_000000F;QSTART=207998;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:37:24,13 0|1:47:25,22 1|1:22:17,5 +chr20 249081 . T C 60 . QNAME=cluster19_000000F;QSTART=208225;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:18,5 0|1:39:18,21 1|1:34:17,17 +chr20 249089 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25462795;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:36:12,24 ./.:20:7,13 1|0:35:20,15 +chr20 249089 . C CAA 60 . QNAME=cluster19_000000F;QSTART=208234;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:24:19,5 0|1:48:24,24 0|1:27:11,16 +chr20 249337 . G C 60 . QNAME=cluster19_000000F;QSTART=208483;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:25:11,14 0|1:25:6,19 ./.:26:12,14 +chr20 249412 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=202962;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:11,13 1|0:29:9,20 ./.:40:22,18 +chr20 249417 . CAT C 60 . QNAME=cluster19_000000F;QSTART=208564;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD ./.:39:24,15 0|1:34:11,23 ./.:24:6,18 +chr20 249417 . CATA C 60 . QNAME=cluster23_scaffold_3;QSTART=25462467;QSTRAND=-;GCPCT=25;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.75 GT:DP:AD ./.:33:22,11 ./.:15:5,10 1|1:29:20,9 +chr20 249536 . A T 60 . QNAME=cluster19_000000F;QSTART=208680;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:27:20,7 0|1:41:25,16 ./.:20:9,11 +chr20 249875 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=228862;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:21:6,15 0|1:30:7,23 1|1:31:12,19 +chr20 249900 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=228887;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:26:12,14 0|1:32:23,9 1|1:24:18,6 +chr20 250218 . C T 60 . QNAME=cluster19_000000F;QSTART=209362;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:9,17 0|1:21:12,9 ./.:19:8,11 +chr20 250342 . C T 60 . QNAME=cluster19_000000F;QSTART=209486;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:9,16 0|1:30:8,22 ./.:17:11,6 +chr20 250449 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229436;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:26:7,19 0|1:28:13,15 1|1:33:19,14 +chr20 250472 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=229459;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:9,18 ./.:26:14,12 1|1:28:13,15 +chr20 250554 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=229541;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:19,16 ./.:25:20,5 1|1:29:14,15 +chr20 250671 . A C 60 . QNAME=cluster19_000000F;QSTART=209815;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:8,20 0|1:19:9,10 ./.:40:24,16 +chr20 250864 . G A 60 . QNAME=cluster19_000000F;QSTART=210008;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:27:9,18 0|1:38:25,13 ./.:38:19,19 +chr20 251035 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230022;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:40:23,17 ./.:33:23,10 1|1:35:10,25 +chr20 251370 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=230357;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:20,19 ./.:45:21,24 1|0:36:17,19 +chr20 251466 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=230453;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:24:10,14 0|1:16:5,11 1|1:35:10,25 +chr20 251699 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=230686;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:15,22 ./.:35:15,20 1|1:28:19,9 +chr20 251939 . G C 60 . QNAME=cluster19_000000F;QSTART=211083;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:45:25,20 0|1:18:7,11 ./.:34:24,10 +chr20 251993 . T TACACAC 60 . QNAME=cluster19_000000F;QSTART=211138;QSTRAND=+;GCPCT=42;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.724408 GT:DP:AD ./.:32:12,20 0|1:30:5,25 ./.:42:22,20 +chr20 251993 . T TACACACACAC 60 . QNAME=cluster23_scaffold_3;QSTART=25459884;QSTRAND=-;GCPCT=45;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.674294 GT:DP:AD ./.:16:10,6 ./.:31:10,21 1|0:38:25,13 +chr20 251993 . T TACACACACACACAC 60 . QNAME=cluster23_scaffold_2;QSTART=25444505;QSTRAND=-;GCPCT=46;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.643346 GT:DP:AD ./.:18:6,12 ./.:20:8,12 0|1:28:18,10 +chr20 251993 . T TACACACACACACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=230981;QSTRAND=+;GCPCT=47;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.631967 GT:DP:AD 1|0:41:17,24 ./.:28:9,19 ./.:23:8,15 +chr20 252833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=231836;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:8,24 ./.:40:20,20 1|1:16:10,6 +chr20 252834 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231837;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:42:18,24 ./.:29:12,17 1|1:30:10,20 +chr20 252881 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=231885;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:32:10,22 ./.:21:16,5 1|1:47:24,23 +chr20 252982 . A T 60 . QNAME=cluster19_000000F;QSTART=212132;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:36:25,11 0|1:28:12,16 ./.:37:24,13 +chr20 253238 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=232240;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:42:18,24 1|1:44:20,24 1|1:36:17,19 +chr20 253538 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=232540;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:48:23,25 0|1:35:24,11 1|1:34:22,12 +chr20 253719 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=232721;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:15:7,8 0|1:28:15,13 1|1:39:24,15 +chr20 253968 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25457909;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:23:13,10 ./.:45:21,24 1|0:24:14,10 +chr20 254466 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=233468;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:16:6,10 0|1:30:21,9 1|1:27:16,11 +chr20 255081 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234083;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:24:10,14 0|1:27:18,9 1|1:16:10,6 +chr20 255329 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234331;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:26:17,9 0|1:42:17,25 1|1:30:25,5 +chr20 255356 . C CAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=234359;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.251629 GT:DP:AD 1|0:37:19,18 0|1:36:21,15 ./.:25:11,14 +chr20 255356 . C CAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25456512;QSTRAND=-;GCPCT=10;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.234498 GT:DP:AD ./.:27:15,12 ./.:13:6,7 1|1:39:21,18 +chr20 255447 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234457;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:23:12,11 0|1:30:6,24 1|1:34:11,23 +chr20 255527 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234537;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:14,19 0|1:35:23,12 1|1:43:19,24 +chr20 255597 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234607;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:36:21,15 0|1:22:16,6 1|1:24:12,12 +chr20 255645 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234655;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:44:22,22 0|1:27:18,9 1|1:17:12,5 +chr20 255687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=234697;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:38:17,21 0|1:32:11,21 1|1:36:19,17 +chr20 255778 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=234788;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:21,17 0|1:36:25,11 1|1:43:18,25 +chr20 255818 . G GAT 60 . QNAME=cluster19_000000F;QSTART=25506967;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD ./.:32:7,25 1|0:24:15,9 ./.:39:18,21 +chr20 255818 . GAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=234829;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 1|0:30:6,24 ./.:25:9,16 1|1:26:13,13 +chr20 256161 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235169;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:46:25,21 0|1:18:7,11 1|1:32:16,16 +chr20 256351 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235359;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:5,16 0|1:16:7,9 1|1:37:14,23 +chr20 256411 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=235419;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:45:23,22 0|1:30:12,18 1|1:25:18,7 +chr20 256777 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235785;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:28:17,11 0|1:33:15,18 1|1:19:7,12 +chr20 256856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=235864;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:15,19 0|1:27:13,14 1|1:25:8,17 +chr20 256904 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235912;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:10,12 0|1:18:11,7 1|1:36:12,24 +chr20 256928 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=235936;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:18:6,12 0|1:19:6,13 1|1:22:10,12 +chr20 256977 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=235985;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:18:7,11 0|1:21:13,8 1|1:12:6,6 +chr20 257008 . CAGAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236017;QSTRAND=+;GCPCT=40;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.960964 GT:DP:AD 1|1:26:20,6 0|1:36:18,18 1|1:35:15,20 +chr20 257036 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236040;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:33:20,13 0|1:36:19,17 1|1:35:25,10 +chr20 257175 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=236180;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|0:37:24,13 0|1:23:9,14 1|1:31:22,9 +chr20 257379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236384;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:22,5 0|1:19:6,13 1|1:39:18,21 +chr20 257794 . CTGGTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236800;QSTRAND=+;GCPCT=57;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.778328 GT:DP:AD 1|0:28:21,7 0|1:43:19,24 1|1:36:20,16 +chr20 257866 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=236865;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:20:13,7 0|1:29:14,15 1|1:22:6,16 +chr20 257889 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=236888;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:36:12,24 0|1:24:7,17 1|1:36:14,22 +chr20 257899 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=236898;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:28:21,7 0|1:11:5,6 1|1:47:23,24 +chr20 258096 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=237095;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:33:8,25 0|1:23:18,5 1|1:17:9,8 +chr20 258653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=237652;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:28:7,21 0|1:16:10,6 1|1:24:18,6 +chr20 258767 . A ACTGTGAAGACCTGGTCCCCACCCCCGTTTTTAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=237767;QSTRAND=+;SVTYPE=INS;SVLEN=33;GCPCT=55;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.960576 GT:DP:AD 1/0:20:13,7 0/1:41:19,22 1/1:25:12,13 +chr20 258770 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=237802;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:24:12,12 0|1:48:25,23 1|1:32:7,25 +chr20 259023 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238055;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:24,15 0|1:20:5,15 1|1:31:22,9 +chr20 259047 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=238079;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:27:20,7 0|1:15:9,6 1|1:34:10,24 +chr20 259056 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=238088;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:20,23 0|1:21:6,15 1|1:29:7,22 +chr20 260063 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239095;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:44:21,23 0|1:38:17,21 1|1:42:21,21 +chr20 260065 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239097;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:20,15 0|1:28:11,17 1|1:31:18,13 +chr20 260593 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=239625;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:19,23 0|1:37:15,22 1|1:36:22,14 +chr20 260725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239757;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:19:5,14 0|1:18:7,11 1|1:25:19,6 +chr20 260755 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=239787;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:46:21,25 ./.:14:6,8 1|1:18:7,11 +chr20 260997 . G A 60 . QNAME=cluster19_000000F;QSTART=220179;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:7,22 0|1:38:25,13 ./.:46:21,25 +chr20 261185 . TTTTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=240218;QSTRAND=+;GCPCT=20;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.360964 GT:DP:AD 1|0:20:7,13 ./.:22:17,5 1|1:19:9,10 +chr20 261768 . G A 60 . QNAME=cluster19_000000F;QSTART=220950;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:34:10,24 0|1:35:14,21 ./.:19:14,5 +chr20 261944 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=240972;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:20:12,8 ./.:34:19,15 1|1:26:11,15 +chr20 261974 . G T 60 . QNAME=cluster19_000000F;QSTART=221156;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:16:11,5 0|1:32:22,10 ./.:32:25,7 +chr20 262044 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=241072;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:31:8,23 0|1:40:19,21 1|1:40:25,15 +chr20 262053 . T C 60 . QNAME=cluster19_000000F;QSTART=221235;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:19,20 0|1:37:12,25 ./.:30:16,14 +chr20 262157 . C T 60 . QNAME=cluster19_000000F;QSTART=221339;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:48:23,25 0|1:21:11,10 ./.:33:14,19 +chr20 262198 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25434273;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:16:6,10 ./.:28:11,17 0|1:29:15,14 +chr20 262582 . C CT 60 . QNAME=cluster19_000000F;QSTART=221765;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:30:25,5 0|1:27:16,11 ./.:22:10,12 +chr20 262711 . G T 60 . QNAME=cluster19_000000F;QSTART=221894;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:24:7,17 0|1:29:9,20 ./.:45:22,23 +chr20 262757 . G C 60 . QNAME=cluster19_000000F;QSTART=221940;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:11:5,6 0|1:39:21,18 ./.:37:13,24 +chr20 263038 . A C 60 . QNAME=cluster19_000000F;QSTART=222221;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:19:11,8 0|1:28:20,8 ./.:44:19,25 +chr20 263283 . C A 60 . QNAME=cluster19_000000F;QSTART=222466;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:16,15 0|1:30:9,21 ./.:15:7,8 +chr20 263451 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=242479;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:13,20 0|1:43:23,20 1|1:31:24,7 +chr20 263479 . G GGT 60 . QNAME=cluster19_000000F;QSTART=222663;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:24:9,15 0|1:23:6,17 ./.:33:10,23 +chr20 263497 . TGTGTGTGC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=242526;QSTRAND=+;GCPCT=55;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.696074 GT:DP:AD 1|0:40:24,16 ./.:31:24,7 1|1:26:7,19 +chr20 263505 . C T 60 . QNAME=cluster19_000000F;QSTART=222690;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:15,10 0|1:22:7,15 ./.:18:13,5 +chr20 263692 . A G 60 . QNAME=cluster19_000000F;QSTART=222877;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:25:18,7 0|1:18:9,9 ./.:22:8,14 +chr20 263732 . C T 60 . QNAME=cluster19_000000F;QSTART=222917;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:27:22,5 0|1:26:11,15 ./.:26:21,5 +chr20 263776 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=242796;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:14,25 ./.:12:5,7 1|1:29:7,22 +chr20 264344 . G A 60 . QNAME=cluster19_000000F;QSTART=223529;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:21,11 0|1:30:7,23 ./.:39:14,25 +chr20 264825 . T G 60 . QNAME=cluster19_000000F;QSTART=224010;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:9,20 0|1:41:21,20 ./.:38:16,22 +chr20 265021 . G GT 60 . QNAME=HG002-S9-H2-000001F;QSTART=218568;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:18:13,5 1|0:24:9,15 0|1:48:24,24 +chr20 265021 . G T 60 . QNAME=cluster19_000000F;QSTART=224206;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:8,16 0|1:41:20,21 ./.:26:17,9 +chr20 265021 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=244042;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:20:9,11 ./.:41:21,20 ./.:23:16,7 +chr20 265024 . T G 60 . QNAME=cluster19_000000F;QSTART=224209;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:13,23 0|1:36:20,16 ./.:47:25,22 +chr20 265028 . T G 60 . QNAME=cluster19_000000F;QSTART=224213;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:20,11 0|1:36:12,24 ./.:12:6,6 +chr20 265032 . T G 60 . QNAME=cluster19_000000F;QSTART=224217;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:25,10 0|1:27:6,21 ./.:22:8,14 +chr20 265049 . C T 60 . QNAME=cluster19_000000F;QSTART=224234;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:24,17 0|1:28:12,16 ./.:19:9,10 +chr20 265294 . G T 60 . QNAME=cluster19_000000F;QSTART=224479;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:21:15,6 0|1:27:19,8 ./.:39:17,22 +chr20 265390 . AAAG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=244410;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD 1|0:25:15,10 ./.:35:12,23 1|1:26:9,17 +chr20 265614 . C T 60 . QNAME=cluster19_000000F;QSTART=224799;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:27:22,5 0|1:16:8,8 ./.:31:8,23 +chr20 265842 . T TTAAA 60 . QNAME=cluster19_000000F;QSTART=225028;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.485475 GT:DP:AD ./.:27:6,21 0|1:20:5,15 1|1:42:20,22 +chr20 266980 . CCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25444877;QSTRAND=-;GCPCT=66;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:32:23,9 ./.:22:8,14 1|1:29:12,17 +chr20 267423 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25429056;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:20,12 ./.:34:19,15 0|1:35:10,25 +chr20 268285 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25428194;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:20:5,15 ./.:27:9,18 0|1:37:21,16 +chr20 268294 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25428185;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:28:17,11 ./.:21:8,13 0|1:23:12,11 +chr20 268599 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25443260;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:9,23 ./.:24:13,11 1|1:29:8,21 +chr20 269435 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25442424;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:38:25,13 ./.:41:22,19 1|1:28:5,23 +chr20 269686 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=223234;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:31:10,21 ./.:37:16,21 ./.:27:20,7 +chr20 269844 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=223390;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:34:11,23 ./.:11:6,5 ./.:30:20,10 +chr20 270732 . ACTT A 60 . QNAME=cluster19_000000F;QSTART=229922;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.75 GT:DP:AD ./.:24:17,7 0|1:25:19,6 ./.:30:11,19 +chr20 271440 . GCATACACACACA G 60 . QNAME=cluster23_scaffold_3;QSTART=25440419;QSTRAND=-;GCPCT=46;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.807165 GT:DP:AD ./.:42:22,20 ./.:20:14,6 1|0:24:14,10 +chr20 271443 . T TAC 60 . QNAME=cluster23_scaffold_2;QSTART=25425034;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.792481 GT:DP:AD ./.:31:21,10 ./.:13:6,7 0|1:25:13,12 +chr20 271443 . TACAC T 60 . QNAME=cluster19_000000F;QSTART=25491341;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:32:22,10 1|0:32:12,20 ./.:47:25,22 +chr20 271455 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25440416;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:49:25,24 ./.:46:21,25 1|0:30:23,7 +chr20 271524 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25440347;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:14,7 ./.:36:19,17 1|0:33:9,24 +chr20 271615 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25440256;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:34:22,12 ./.:22:13,9 1|0:18:10,8 +chr20 272116 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25439754;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:27:21,6 ./.:42:23,19 1|0:36:15,21 +chr20 272200 . TA T 60 . QNAME=cluster23_scaffold_3;QSTART=25439670;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:23:12,11 ./.:27:12,15 1|0:46:21,25 +chr20 272348 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25439523;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:9,19 ./.:21:7,14 1|0:40:16,24 +chr20 272493 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=25423984;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:26:20,6 ./.:15:6,9 0|1:25:13,12 +chr20 273372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=252388;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:26:11,15 ./.:35:19,16 1|0:36:16,20 +chr20 273876 . C CAAGAA 60 . QNAME=cluster23_scaffold_3;QSTART=25437990;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.625815 GT:DP:AD ./.:24:12,12 ./.:23:16,7 1|0:31:20,11 +chr20 273894 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25437972;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:22:13,9 ./.:30:24,6 1|0:47:24,23 +chr20 273903 . A AAGGGAGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=227450;QSTRAND=+;GCPCT=66;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 0|1:41:24,17 1|1:19:5,14 ./.:34:19,15 +chr20 273903 . AAGGG A 60 . QNAME=cluster23_scaffold_2;QSTART=25422574;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.485475 GT:DP:AD ./.:32:21,11 ./.:24:10,14 0|1:22:13,9 +chr20 273903 . AAGGGAGGG A 60 . QNAME=cluster23_scaffold_3;QSTART=25437963;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:42:18,24 ./.:36:20,16 1|0:31:13,18 +chr20 274125 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253141;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:16:9,7 ./.:12:6,6 ./.:36:20,16 +chr20 274210 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253226;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:7,15 ./.:27:14,13 1|0:18:11,7 +chr20 274599 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=253615;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:39:16,23 ./.:26:16,10 +chr20 274820 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=253837;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:17:12,5 ./.:39:14,25 ./.:48:25,23 +chr20 274829 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25437045;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:47:25,22 ./.:41:22,19 1|0:38:13,25 +chr20 274893 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25436981;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:24:6,18 ./.:27:7,20 1|0:28:6,22 +chr20 275122 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25436752;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:17,16 ./.:41:20,21 1|0:21:5,16 +chr20 275241 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=254256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:35:17,18 ./.:36:13,23 1|0:39:18,21 +chr20 275322 . C CG 60 . QNAME=cluster23_scaffold_3;QSTART=25436551;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:26:19,7 ./.:13:7,6 1|0:35:22,13 +chr20 275361 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25436512;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:16,9 ./.:49:24,25 1|0:28:11,17 +chr20 275466 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=254481;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:7,24 ./.:34:12,22 ./.:32:19,13 +chr20 275606 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25436267;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:25:12,13 ./.:34:11,23 1|0:32:22,10 +chr20 275918 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25435955;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:22,20 ./.:37:12,25 1|0:30:17,13 +chr20 275932 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=254947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:6,19 ./.:43:23,20 1|0:29:21,8 +chr20 276086 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255101;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:21:9,12 ./.:26:10,16 1|0:29:6,23 +chr20 276119 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25435753;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:22:6,16 ./.:31:6,25 1|0:33:23,10 +chr20 276122 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25435750;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:24,18 ./.:39:18,21 1|0:39:25,14 +chr20 276225 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255240;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:12,22 ./.:35:17,18 1|0:32:14,18 +chr20 276245 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255260;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:30:5,25 ./.:14:5,9 ./.:24:18,6 +chr20 276351 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255366;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:13,17 ./.:33:14,19 1|0:41:17,24 +chr20 276391 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=255406;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:25:6,19 ./.:40:15,25 1|0:39:19,20 +chr20 276679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=255694;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:27:21,6 ./.:32:11,21 1|0:32:15,17 +chr20 277092 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256107;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:22:9,13 ./.:37:23,14 1|0:32:14,18 +chr20 277162 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256177;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:21:15,6 ./.:45:23,22 ./.:30:23,7 +chr20 277171 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=256186;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:15:7,8 ./.:19:13,6 1|0:28:9,19 +chr20 277550 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=256565;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:14:5,9 ./.:28:22,6 1|0:31:20,11 +chr20 277574 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256589;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:30:21,9 ./.:21:6,15 1|0:35:23,12 +chr20 277654 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256669;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:20:13,7 ./.:18:7,11 1|0:24:10,14 +chr20 277664 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=256679;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:31:7,24 ./.:26:10,16 1|0:43:18,25 +chr20 277800 . C CAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=256816;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 1|0:29:21,8 ./.:21:11,10 1|0:43:20,23 +chr20 277808 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256825;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:34:15,19 ./.:21:14,7 1|0:23:13,10 +chr20 277915 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=256932;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:16,19 ./.:32:22,10 1|0:33:12,21 +chr20 278070 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=257087;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:19:9,10 ./.:23:10,13 1|0:42:22,20 +chr20 278107 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25433763;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:8,23 ./.:30:25,5 1|0:30:14,16 +chr20 278224 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=257241;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:46:25,21 ./.:30:25,5 1|0:21:6,15 +chr20 278515 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=257532;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:29:16,13 ./.:29:24,5 ./.:33:13,20 +chr20 278561 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25433309;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:34:18,16 ./.:13:7,6 1|0:39:18,21 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGCGGGAG 60 . QNAME=cluster23_scaffold_2;QSTART=25417363;QSTRAND=-;SVTYPE=INS;SVLEN=188;HOMPCT=3.2;REMAP=partial;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.591695 GT:DP:AD ./.:19:11,8 ./.:33:12,21 0/1:36:12,24 +chr20 278930 . C CGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=232485;QSTRAND=+;SVTYPE=INS;SVLEN=184;HOMPCT=3.2;REMAP=partial;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.591756 GT:DP:AD 0/1:29:9,20 ./.:22:16,6 ./.:24:5,19 +chr20 278962 . G GGGAGGGAGGGACGGAGGGAGGAAGGGCGGGAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=257980;QSTRAND=+;SVTYPE=INS;SVLEN=32;GCPCT=75;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.60004 GT:DP:AD 1/0:42:17,25 ./.:17:10,7 ./.:20:9,11 +chr20 278966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258015;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:15:5,10 ./.:38:13,25 ./.:42:17,25 +chr20 278977 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258026;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:28:5,23 ./.:26:12,14 ./.:12:7,5 +chr20 279062 . G GGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGTGGGAGGGAGGGAGGGAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=258112;QSTRAND=+;SVTYPE=INS;SVLEN=139;HOMPCT=3.2;REMAP=tandem;REMAPHits=chr20:279033-279148.87,chr20:278941-279082.100;GCPCT=77;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.591759 GT:DP:AD 1/0:29:6,23 ./.:40:23,17 ./.:32:9,23 +chr20 279069 . A AGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGC 60 . QNAME=cluster19_000000F;QSTART=25483168;QSTRAND=-;SVTYPE=INS;SVLEN=543;HOMPCT=3.2;REMAP=partial;GCPCT=79;GTCNT=2,0,0,1;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.592739 GT:DP:AD ./.:37:13,24 1/1:24:6,18 ./.:42:19,23 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25416710;QSTRAND=-;SVTYPE=INS;SVLEN=514;HOMPCT=3.2;REMAP=partial;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.582903 GT:DP:AD ./.:39:23,16 ./.:26:5,21 0/1:21:11,10 +chr20 279069 . A AGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGCGGGAGGGCGGGACGGAGGGACGGAGGGAGGGCGGGACGGAGGGCGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=232808;QSTRAND=+;SVTYPE=INS;SVLEN=438;HOMPCT=3.2;REMAP=partial;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.589779 GT:DP:AD 0/1:26:5,21 ./.:30:8,22 ./.:38:15,23 +chr20 279098 . G GGGAGGGAGGGCGGAGGGAGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGAGGGAGGGCGGAGGGAGGGAGGGGCGGGACGGAGGGAGGGAGGGCGGGAGGGATGGAGGGAGGGAGGGCGGGACGGAGGGAGGGACGGAGGGCGGGACGGAGGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=25432493;QSTRAND=-;SVTYPE=INS;SVLEN=179;HOMPCT=3.2;REMAP=tandem;REMAPHits=chr20:278929-279088.81,chr20:278933-279100.92;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=6;NeighId=1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.590685 GT:DP:AD ./.:25:20,5 ./.:28:17,11 1/0:23:13,10 +chr20 279102 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25432489;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:40:22,18 ./.:29:22,7 1|0:42:19,23 +chr20 279177 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=258365;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:30:10,20 ./.:29:6,23 0|1:32:15,17 +chr20 279328 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=258516;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,2,1;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:14:6,8 ./.:17:8,9 1|0:12:5,7 +chr20 279759 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=258947;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:33:13,20 ./.:47:25,22 1|0:35:19,16 +chr20 279880 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259068;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:33:13,20 ./.:37:23,14 1|0:21:9,12 +chr20 280083 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=25431508;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:29:15,14 ./.:30:13,17 1|0:25:18,7 +chr20 280230 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259418;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:28:7,21 ./.:32:11,21 ./.:15:5,10 +chr20 280339 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=259527;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:47:22,25 ./.:25:17,8 ./.:35:23,12 +chr20 280403 . TAAC T 60 . QNAME=cluster23_scaffold_3;QSTART=25431252;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.75 GT:DP:AD ./.:20:15,5 ./.:31:23,8 1|0:39:16,23 +chr20 280418 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25431240;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:25,16 ./.:18:5,13 1|0:42:25,17 +chr20 280635 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25431023;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:41:18,23 ./.:29:21,8 1|0:34:10,24 +chr20 281010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=260198;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:45:23,22 ./.:44:20,24 ./.:28:10,18 +chr20 281470 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=260658;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:27:7,20 ./.:38:23,15 1|0:26:8,18 +chr20 281585 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25430073;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:45:24,21 ./.:31:6,25 1|0:20:15,5 +chr20 281929 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=261117;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:16,13 ./.:43:20,23 1|0:32:14,18 +chr20 282596 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=261784;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:13:5,8 ./.:44:23,21 ./.:27:22,5 +chr20 282775 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=261963;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:24,11 ./.:35:12,23 ./.:26:8,18 +chr20 283019 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262207;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:19,20 ./.:17:8,9 ./.:20:10,10 +chr20 283328 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262516;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:29:6,23 ./.:19:5,14 ./.:30:20,10 +chr20 283411 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=262599;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:14:6,8 ./.:32:18,14 ./.:37:21,16 +chr20 283535 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=262723;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:18:7,11 ./.:37:17,20 ./.:28:7,21 +chr20 283694 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=262883;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:31:21,10 ./.:37:20,17 ./.:26:5,21 +chr20 283724 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=262913;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:19:13,6 ./.:24:5,19 ./.:26:14,12 +chr20 283802 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25427856;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:14,23 ./.:27:16,11 1|0:35:18,17 +chr20 283857 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263046;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:30:25,5 ./.:22:14,8 ./.:29:7,22 +chr20 284338 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263527;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:12,25 ./.:45:24,21 ./.:22:8,14 +chr20 284356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=263545;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:28:12,16 ./.:29:5,24 ./.:35:11,24 +chr20 284597 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=263786;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:30:17,13 1|0:39:20,19 +chr20 284724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=263913;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:32:18,14 ./.:25:13,12 1|0:28:15,13 +chr20 284881 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264070;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:16,25 ./.:42:23,19 1|0:17:9,8 +chr20 285327 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=264516;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:12,18 ./.:43:19,24 1|0:26:15,11 +chr20 285600 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=264789;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:12,23 ./.:38:17,21 1|0:26:18,8 +chr20 285621 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264810;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:21,18 ./.:22:15,7 1|0:39:21,18 +chr20 285738 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=264927;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:16,21 ./.:40:21,19 ./.:40:24,16 +chr20 286151 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=265340;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:11:5,6 ./.:39:23,16 ./.:20:8,12 +chr20 286163 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=265353;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0.5 GT:DP:AD 1|0:13:6,7 ./.:19:10,9 ./.:18:12,6 +chr20 286710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=265898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:14:8,6 ./.:21:12,9 1|0:28:5,23 +chr20 286812 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=266000;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:19,10 ./.:28:7,21 1|0:43:21,22 +chr20 287237 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266425;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:25:20,5 ./.:36:17,19 1|0:37:24,13 +chr20 287305 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=266493;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:19,18 ./.:30:14,16 1|0:33:23,10 +chr20 287629 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=266817;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:18:8,10 ./.:36:23,13 1|0:39:14,25 +chr20 287833 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267021;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:14:8,6 ./.:27:6,21 1|0:30:16,14 +chr20 287837 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267025;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:19:6,13 ./.:32:13,19 ./.:31:20,11 +chr20 287876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=267064;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:24:15,9 ./.:26:15,11 1|0:20:14,6 +chr20 287908 . C CAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25423742;QSTRAND=-;GCPCT=11;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.251629 GT:DP:AD ./.:40:18,22 ./.:38:21,17 1|0:29:24,5 +chr20 287908 . C CAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=267097;QSTRAND=+;GCPCT=10;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.234498 GT:DP:AD 1|0:26:10,16 ./.:30:17,13 ./.:44:21,23 +chr20 287932 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=267129;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:15,17 ./.:27:14,13 ./.:23:14,9 +chr20 288158 . C CTTTCTTTTTCTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=267356;QSTRAND=+;GCPCT=23;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.389675 GT:DP:AD 1|0:36:16,20 ./.:34:16,18 ./.:30:5,25 +chr20 288174 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25407604;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:23:6,17 ./.:33:11,22 0|1:46:25,21 +chr20 288174 . C CTTTTTCTTTTTCTT 60 . QNAME=cluster23_scaffold_3;QSTART=25423462;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.360964 GT:DP:AD ./.:27:11,16 ./.:31:8,23 1|0:41:16,25 +chr20 288365 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267574;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:7,25 ./.:44:21,23 1|0:39:18,21 +chr20 288516 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=267725;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:13,5 ./.:25:9,16 1|0:32:16,16 +chr20 289049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268258;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:22:5,17 ./.:39:16,23 1|0:24:14,10 +chr20 289196 . A ACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=268406;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:37:12,25 ./.:27:19,8 ./.:28:23,5 +chr20 289196 . A ACCC 60 . QNAME=cluster23_scaffold_3;QSTART=25422437;QSTRAND=-;GCPCT=75;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:28:5,23 ./.:28:15,13 1|0:44:21,23 +chr20 289773 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268985;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:29:19,10 ./.:35:22,13 1|0:27:6,21 +chr20 289787 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=268997;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:34:22,12 ./.:27:17,10 1|0:30:18,12 +chr20 289993 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269203;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:25,18 ./.:29:6,23 1|0:41:23,18 +chr20 290134 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=269344;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:46:23,23 ./.:48:24,24 1|0:18:13,5 +chr20 290494 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=244671;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:18:12,6 1|1:47:22,25 0|1:30:5,25 +chr20 290563 . A ATT 60 . QNAME=cluster23_scaffold_2;QSTART=25405212;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:40:20,20 ./.:33:10,23 0|1:27:15,12 +chr20 290584 . T TTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=269795;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:16:10,6 ./.:32:16,16 ./.:18:10,8 +chr20 290584 . T TTTA 60 . QNAME=cluster23_scaffold_3;QSTART=25421047;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.405639 GT:DP:AD ./.:44:24,20 ./.:23:10,13 1|0:27:17,10 +chr20 291169 . TTCTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=270382;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.485475 GT:DP:AD 1|0:41:25,16 ./.:27:21,6 1|0:30:13,17 +chr20 291796 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=271004;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:30:23,7 ./.:11:6,5 1|0:27:14,13 +chr20 291952 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=271160;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:25:15,10 1|1:23:5,18 1|1:37:23,14 +chr20 292806 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272015;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:33:17,16 ./.:28:7,21 1|0:22:12,10 +chr20 293331 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25418305;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:45:25,20 ./.:44:24,20 1|0:20:15,5 +chr20 293433 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=272641;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|0:36:16,20 ./.:22:17,5 ./.:32:25,7 +chr20 293692 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=272898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:35:25,10 ./.:29:8,21 1|0:17:5,12 +chr20 294073 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=273280;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:32:23,9 ./.:34:20,14 ./.:46:22,24 +chr20 296976 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251153;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:17,16 1|1:21:16,5 0|1:25:8,17 +chr20 297051 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=251228;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:6,18 1|1:26:10,16 0|1:25:15,10 +chr20 297191 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=251368;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:43:24,19 1|1:32:10,22 0|1:30:9,21 +chr20 297482 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=276688;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:23:7,16 ./.:29:23,6 1|0:40:16,24 +chr20 297874 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=252051;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:18:13,5 1|1:44:23,21 0|1:23:6,17 +chr20 298162 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=277366;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:24:19,5 ./.:25:8,17 0|1:36:25,11 +chr20 298541 . C T 60 . QNAME=cluster19_000000F;QSTART=258279;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:30:6,24 0|1:40:23,17 ./.:21:5,16 +chr20 298839 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278043;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:9,24 ./.:44:19,25 1|0:26:15,11 +chr20 299130 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=278334;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:36:15,21 ./.:50:25,25 1|0:40:20,20 +chr20 301074 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25394701;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:20,15 ./.:19:5,14 0|1:25:5,20 +chr20 301778 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=280982;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:22:17,5 ./.:32:25,7 1|0:32:25,7 +chr20 302639 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=281844;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|0:26:20,6 ./.:40:21,19 1|0:30:24,6 +chr20 302891 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282096;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:36:12,24 1|1:41:21,20 1|1:20:6,14 +chr20 303233 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=282438;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:26:18,8 1|1:47:22,25 1|1:26:12,14 +chr20 303404 . C A 60 . QNAME=cluster19_000000F;QSTART=263142;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:17,7 0|1:39:22,17 ./.:28:18,10 +chr20 303430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=282635;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:25:16,9 1|0:22:9,13 1|1:43:18,25 +chr20 304111 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283316;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:27:17,10 1|0:30:7,23 1|1:46:25,21 +chr20 304170 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=283375;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:29:6,23 1|1:16:7,9 1|1:26:14,12 +chr20 304190 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=283395;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:23,20 ./.:25:7,18 1|1:14:7,7 +chr20 304257 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=258434;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:37:22,15 1|0:20:5,15 0|1:17:12,5 +chr20 304335 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258512;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:12,21 1|0:34:15,19 0|1:28:23,5 +chr20 304365 . G C 60 . QNAME=cluster19_000000F;QSTART=264103;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:19,20 0|1:32:12,20 ./.:24:7,17 +chr20 304375 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25391400;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:20:6,14 ./.:29:7,22 0|1:40:21,19 +chr20 304376 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=258553;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:39:16,23 1|1:33:15,18 ./.:36:24,12 +chr20 304377 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25391398;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:23:10,13 ./.:28:5,23 0|1:28:22,6 +chr20 304450 . T C 60 . QNAME=cluster19_000000F;QSTART=264188;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:37:18,19 0|1:23:14,9 ./.:31:25,6 +chr20 304460 . T C 60 . QNAME=cluster19_000000F;QSTART=264198;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:15,19 0|1:33:19,14 ./.:36:13,23 +chr20 304461 . T C 60 . QNAME=cluster19_000000F;QSTART=264199;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:22,13 0|1:32:18,14 ./.:24:7,17 +chr20 304463 . A T 60 . QNAME=cluster19_000000F;QSTART=264201;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:29:13,16 0|1:49:24,25 ./.:17:12,5 +chr20 304504 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258682;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:39:22,17 1|0:41:25,16 0|1:16:8,8 +chr20 304679 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=283884;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:8,24 ./.:42:23,19 1|0:26:5,21 +chr20 304705 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=258881;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:28:8,20 1|1:31:25,6 0|1:15:9,6 +chr20 305012 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=284217;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:15,20 1|1:20:6,14 1|1:33:12,21 +chr20 305384 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=284589;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:29:19,10 0|1:21:14,7 1|0:35:23,12 +chr20 305403 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=284608;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:11,24 1|1:21:7,14 1|1:43:23,20 +chr20 305843 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260019;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:29:20,9 1|0:30:17,13 0|1:38:15,23 +chr20 305871 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260047;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:39:20,19 1|1:44:23,21 0|1:24:12,12 +chr20 305882 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=260058;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:21:10,11 1|1:48:25,23 0|1:29:19,10 +chr20 305943 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=285148;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:19,24 1|1:34:16,18 1|1:22:13,9 +chr20 306004 . TAAATA T 60 . QNAME=cluster19_000000F;QSTART=265743;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:38:19,19 0|1:14:8,6 ./.:45:24,21 +chr20 306194 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=285399;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:32:18,14 1|1:41:17,24 1|1:39:23,16 +chr20 306232 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=285438;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:29:12,17 0|1:23:6,17 1|0:23:5,18 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATGTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=cluster19_000000F;QSTART=25455794;QSTRAND=-;SVTYPE=INS;SVLEN=175;HOMPCT=33.3;REMAP=tandem;REMAPHits=chr20:306267-306420.86;GCPCT=52;GTCNT=2,0,0,1;NumNeighbors=1;NeighId=3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.982307 GT:DP:AD ./.:33:15,18 1/1:35:11,24 ./.:34:9,25 +chr20 306268 . A ACCAGGCTGGAGTGCAGTGGCTCACTGCGTGGCTCGCTACAGCCTACAACTCCTGGGCTCCAGCAATCCTGCTGCCCCAGCCTCCTGTGTAACTGAGACTACAGGCACGCACCACCACACCCAGCTAATTTTTTCTTTCTTTTTTTTTTTTTTGAGATGAACTCTCACTCTGTTGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=285475;QSTRAND=+;SVTYPE=INS;SVLEN=175;HOMPCT=33.3;REMAP=tandem;REMAPHits=chr20:306267-306420.86;GCPCT=51;GTCNT=1,0,0,2;NumNeighbors=1;NeighId=3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.980782 GT:DP:AD 1/1:34:18,16 ./.:32:19,13 1/1:25:13,12 +chr20 306413 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25389187;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:32:25,7 ./.:21:7,14 0|1:26:11,15 +chr20 306414 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=260765;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:37:21,16 1|0:46:25,21 ./.:36:11,25 +chr20 306535 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=260886;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:36:22,14 1|0:37:14,23 0|1:16:11,5 +chr20 306582 . A G 60 . QNAME=cluster19_000000F;QSTART=266491;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:9,24 0|1:22:12,10 ./.:20:11,9 +chr20 306627 . T G 60 . QNAME=cluster19_000000F;QSTART=25455435;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:15,18 1|0:30:22,8 ./.:24:13,11 +chr20 306642 . T C 60 . QNAME=cluster19_000000F;QSTART=25455420;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:10,22 1|1:27:15,12 ./.:29:12,17 +chr20 306653 . C T 60 . QNAME=cluster19_000000F;QSTART=25455409;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:49:24,25 1|0:33:13,20 ./.:19:6,13 +chr20 306667 . T C 60 . QNAME=cluster19_000000F;QSTART=25455395;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:5,23 1|0:45:22,23 ./.:35:21,14 +chr20 306742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=261093;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:25:15,10 ./.:32:9,23 0|1:14:6,8 +chr20 306776 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286157;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:33:23,10 ./.:21:11,10 1|0:33:13,20 +chr20 306885 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286266;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:27:9,18 1|1:31:23,8 1|1:31:17,14 +chr20 306993 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=286374;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:30:25,5 1|1:25:18,7 1|0:27:18,9 +chr20 307589 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=286970;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:32:12,20 1|0:31:16,15 1|1:26:16,10 +chr20 307693 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=262044;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:34:25,9 ./.:19:13,6 ./.:33:10,23 +chr20 307712 . CA C 60 . QNAME=cluster19_000000F;QSTART=25454350;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:36:20,16 1|0:33:9,24 0|1:21:13,8 +chr20 308128 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262479;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:18:11,7 0|1:40:25,15 ./.:41:18,23 +chr20 308132 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=287513;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:43:21,22 1|1:24:8,16 1|1:29:13,16 +chr20 308261 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262612;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:25:9,16 0|1:30:5,25 ./.:37:25,12 +chr20 308278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=262629;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:12,12 1|1:32:10,22 0|1:45:22,23 +chr20 308352 . T C 60 . QNAME=cluster19_000000F;QSTART=25453711;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:16:8,8 1|0:33:13,20 0|1:27:22,5 +chr20 308718 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263069;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:23:15,8 1|1:23:17,6 0|1:24:7,17 +chr20 308968 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=288349;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:23:7,16 1|1:17:6,11 1|1:11:6,5 +chr20 309141 . A G 60 . QNAME=cluster19_000000F;QSTART=25452922;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:27:10,17 1|0:37:12,25 0|1:33:14,19 +chr20 309613 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=263964;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:38:22,16 ./.:22:16,6 ./.:34:22,12 +chr20 309637 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289018;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:29:24,5 ./.:12:7,5 1|0:39:24,15 +chr20 309639 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289020;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:36:18,18 ./.:25:9,16 1|0:41:21,20 +chr20 309653 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289034;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:46:24,22 ./.:15:8,7 1|0:32:23,9 +chr20 309674 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289055;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:39:16,23 1|1:35:14,21 1|1:37:25,12 +chr20 310521 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=289902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:21:6,15 1|0:34:20,14 0|1:13:7,6 +chr20 310522 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=289903;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:19:9,10 1|0:29:8,21 0|1:42:21,21 +chr20 310523 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=289904;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:27:20,7 1|0:21:13,8 0|1:23:18,5 +chr20 310719 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=290101;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:35:20,15 1|0:31:6,25 0|1:45:24,21 +chr20 311107 . C G 60 . QNAME=cluster19_000000F;QSTART=271016;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:22,13 0|1:32:12,20 1|0:38:25,13 +chr20 311145 . T G 60 . QNAME=cluster19_000000F;QSTART=271054;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:10,23 0|1:32:13,19 1|0:30:7,23 +chr20 311237 . C T 60 . QNAME=cluster19_000000F;QSTART=271146;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:21,18 0|1:28:8,20 1|0:25:8,17 +chr20 311327 . G C 60 . QNAME=cluster19_000000F;QSTART=271236;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:24,7 0|1:30:10,20 1|0:34:21,13 +chr20 311347 . C CATTATT 60 . QNAME=cluster19_000000F;QSTART=271257;QSTRAND=+;GCPCT=14;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.689392 GT:DP:AD ./.:21:11,10 0|1:32:12,20 1|0:19:8,11 +chr20 311683 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291065;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:20,19 1|0:46:22,24 0|1:40:16,24 +chr20 311774 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=291156;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:29:21,8 1|1:16:7,9 0|1:18:12,6 +chr20 311791 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=291173;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:32:17,15 1|1:22:14,8 1|1:34:17,17 +chr20 312718 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25382881;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:46:21,25 ./.:18:10,8 0|1:25:15,10 +chr20 314417 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=293799;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:18:7,11 ./.:16:9,7 ./.:43:19,24 +chr20 314431 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=293813;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:48:23,25 ./.:40:23,17 ./.:25:16,9 +chr20 314495 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268847;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:31:6,25 ./.:34:24,10 ./.:38:22,16 +chr20 314567 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25381032;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:7,14 ./.:41:18,23 0|1:18:9,9 +chr20 314595 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=268947;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:30:15,15 ./.:36:15,21 1|0:27:12,15 +chr20 314668 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269020;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:40:19,21 ./.:27:7,20 1|0:33:11,22 +chr20 314877 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=269229;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:21:13,8 ./.:15:6,9 1|0:37:25,12 +chr20 314905 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=25380692;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.459148 GT:DP:AD ./.:37:25,12 ./.:21:14,7 0|1:30:22,8 +chr20 314905 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269258;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:34:9,25 ./.:19:6,13 ./.:24:15,9 +chr20 315222 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269573;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:47:25,22 ./.:35:23,12 1|0:26:6,20 +chr20 315528 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=269879;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:30:20,10 ./.:28:14,14 1|0:32:7,25 +chr20 315724 . G GTATTAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=270076;QSTRAND=+;GCPCT=28;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.921185 GT:DP:AD 0|1:40:23,17 ./.:35:14,21 1|0:28:16,12 +chr20 316587 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=295969;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:14,25 ./.:23:5,18 ./.:37:17,20 +chr20 316724 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25378872;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:17:5,12 ./.:34:11,23 0|1:34:12,22 +chr20 316724 . GTT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=271082;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 0|1:12:5,7 ./.:21:13,8 ./.:44:19,25 +chr20 316724 . GTTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25394724;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.405639 GT:DP:AD ./.:31:19,12 ./.:23:13,10 1|0:31:14,17 +chr20 317772 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=272128;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:28:8,20 ./.:34:13,21 1|0:22:7,15 +chr20 318091 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=272445;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:35:17,18 ./.:30:16,14 1|0:31:18,13 +chr20 318388 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=272742;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:26:5,21 ./.:18:11,7 1|0:16:11,5 +chr20 318854 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=273208;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:17:10,7 1|1:26:10,16 1|1:15:9,6 +chr20 318941 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:35:15,20 1|1:21:15,6 1|1:31:8,23 +chr20 318943 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=273296;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:44:23,21 1|1:22:16,6 1|1:29:16,13 +chr20 318971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=298353;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:43:19,24 1|1:38:21,17 1|0:31:10,21 +chr20 319115 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=273468;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:41:22,19 1|1:29:12,17 1|0:16:5,11 +chr20 319367 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=298749;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:11,22 ./.:28:7,21 ./.:30:17,13 +chr20 319623 . G C 60 . QNAME=cluster19_000000F;QSTART=25442440;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:23,14 1|0:24:5,19 ./.:27:5,22 +chr20 319633 . CCA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=299016;QSTRAND=+;GCPCT=66;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|1:47:22,25 0|1:36:13,23 1|0:37:15,22 +chr20 319838 . G A 60 . QNAME=cluster19_000000F;QSTART=25442225;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:16:9,7 1|0:37:15,22 ./.:29:12,17 +chr20 320255 . CA C 60 . QNAME=cluster23_scaffold_2;QSTART=25375342;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:27:9,18 ./.:37:25,12 0|1:31:9,22 +chr20 321250 . A G 60 . QNAME=cluster19_000000F;QSTART=25440813;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:11,21 1|0:31:15,16 ./.:37:23,14 +chr20 326089 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=305469;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:14,19 0|1:44:19,25 ./.:31:20,11 +chr20 328517 . AT A 60 . QNAME=cluster19_000000F;QSTART=25433546;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:31:20,11 1|1:29:5,24 0|1:20:5,15 +chr20 328517 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=307898;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|1:29:22,7 ./.:41:23,18 1|0:33:25,8 +chr20 328569 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25382887;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:38:15,23 ./.:39:21,18 1|0:31:7,24 +chr20 328569 . GA G 60 . QNAME=cluster19_000000F;QSTART=25433495;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:17:9,8 1|0:46:25,21 ./.:28:21,7 +chr20 328717 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25382739;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:24,8 ./.:37:24,13 1|0:37:21,16 +chr20 336200 . C CTCT 60 . QNAME=cluster23_scaffold_3;QSTART=25375253;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:37:25,12 ./.:34:23,11 1|0:26:17,9 +chr20 336200 . C CTCTTCT 60 . QNAME=HG002-S9-H1-000001F;QSTART=315579;QSTRAND=+;GCPCT=42;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.492614 GT:DP:AD 1|0:34:11,23 0|1:25:14,11 ./.:46:21,25 +chr20 336200 . CTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25359399;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:38:17,21 ./.:24:13,11 0|1:26:18,8 +chr20 336200 . CTCTTCTTCT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=290550;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.485475 GT:DP:AD 0|1:43:21,22 ./.:31:14,17 ./.:34:22,12 +chr20 336263 . TTC T 60 . QNAME=cluster19_000000F;QSTART=25425802;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:27:20,7 1|0:34:18,16 ./.:29:11,18 +chr20 336308 . CTCTTCCTCTTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=315693;QSTRAND=+;GCPCT=46;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.497864 GT:DP:AD 1|1:30:20,10 0|1:42:25,17 0|1:31:24,7 +chr20 336308 . CTCTTCCTCTTCTTCT C 60 . QNAME=cluster23_scaffold_3;QSTART=25375145;QSTRAND=-;GCPCT=43;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.49435 GT:DP:AD ./.:28:5,23 ./.:41:24,17 1|0:33:8,25 +chr20 336336 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25375132;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:24,7 ./.:26:16,10 1|0:37:13,24 +chr20 338577 . A ATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=317950;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD 1|0:48:24,24 0|1:33:16,17 1|1:37:17,20 +chr20 340238 . CTTTCT C 60 . QNAME=cluster23_scaffold_2;QSTART=25355374;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:34:24,10 ./.:35:18,17 0|1:16:7,9 +chr20 340763 . C T 60 . QNAME=cluster19_000000F;QSTART=25421304;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:11,19 1|0:24:16,8 ./.:34:16,18 +chr20 340858 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=295186;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:18:11,7 ./.:32:15,17 ./.:16:10,6 +chr20 340865 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=295193;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:25:7,18 ./.:38:13,25 ./.:36:21,15 +chr20 341112 . T TCACACA 60 . QNAME=HG002-S9-H2-000001F;QSTART=295441;QSTRAND=+;GCPCT=42;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.724408 GT:DP:AD 0|1:38:21,17 ./.:29:15,14 ./.:20:11,9 +chr20 341505 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=320880;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 1|0:29:19,10 ./.:16:11,5 ./.:15:10,5 +chr20 341505 . ATTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=295840;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.325011 GT:DP:AD 0|1:28:23,5 ./.:34:16,18 ./.:37:20,17 +chr20 341968 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296297;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:15:5,10 1|0:34:19,15 ./.:32:11,21 +chr20 342602 . C CTTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=321976;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|0:26:9,17 ./.:30:5,25 ./.:30:21,9 +chr20 342602 . C CTTTTT 60 . QNAME=cluster19_000000F;QSTART=302510;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.325011 GT:DP:AD ./.:30:9,21 0|1:44:19,25 ./.:46:21,25 +chr20 342602 . C CTTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25353008;QSTRAND=-;GCPCT=12;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.271782 GT:DP:AD ./.:32:14,18 ./.:45:25,20 0|1:26:5,21 +chr20 342602 . C CTTTTTTTT 60 . QNAME=cluster23_scaffold_3;QSTART=25368856;QSTRAND=-;GCPCT=11;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0.251629 GT:DP:AD ./.:22:15,7 ./.:19:10,9 1|0:31:25,6 +chr20 342602 . CTTTTTTTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=296932;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.251629 GT:DP:AD 0|1:20:15,5 ./.:39:25,14 ./.:25:12,13 +chr20 342621 . T TTTC 60 . QNAME=cluster19_000000F;QSTART=25419443;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD ./.:44:19,25 1|0:35:16,19 ./.:24:7,17 +chr20 342641 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=296962;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:29:8,21 ./.:41:21,20 ./.:32:8,24 +chr20 342664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=296985;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:24,22 ./.:33:18,15 ./.:29:16,13 +chr20 342939 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=297260;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:22,14 ./.:42:25,17 ./.:39:21,18 +chr20 343326 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=297647;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:36:16,20 ./.:34:9,25 ./.:46:25,21 +chr20 343479 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=297800;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:42:23,19 ./.:26:11,15 ./.:26:5,21 +chr20 343825 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298146;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:23,23 ./.:34:24,10 ./.:45:22,23 +chr20 343865 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=298186;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:17:12,5 ./.:15:8,7 ./.:36:22,14 +chr20 343893 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298214;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:36:21,15 ./.:27:15,12 ./.:17:10,7 +chr20 344097 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25367360;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:37:19,18 ./.:37:23,14 1|0:34:20,14 +chr20 344097 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=298419;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 0|1:39:24,15 ./.:29:6,23 ./.:42:17,25 +chr20 344354 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=298677;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:33:10,23 ./.:22:6,16 ./.:32:10,22 +chr20 344458 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=298781;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:22,18 ./.:30:17,13 ./.:43:22,21 +chr20 344798 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25366659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:9,16 ./.:32:13,19 1|0:21:14,7 +chr20 345372 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=299695;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:34:15,19 ./.:19:9,10 ./.:31:22,9 +chr20 345506 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=299829;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:23:6,17 ./.:29:23,6 ./.:36:15,21 +chr20 345647 . T TACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=299971;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.760964 GT:DP:AD 0|1:22:5,17 ./.:19:14,5 ./.:44:23,21 +chr20 348484 . C CGTGTGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=327861;QSTRAND=+;GCPCT=54;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.674294 GT:DP:AD 1|0:34:21,13 ./.:25:5,20 1|0:26:6,20 +chr20 348484 . C CGTGTGTGTGTGT 60 . QNAME=cluster19_000000F;QSTART=308397;QSTRAND=+;GCPCT=53;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.65716 GT:DP:AD ./.:34:21,13 0|1:26:15,11 0|1:16:5,11 +chr20 348484 . CGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=302812;QSTRAND=+;GCPCT=57;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.724408 GT:DP:AD 0|1:35:15,20 ./.:34:23,11 ./.:17:12,5 +chr20 349198 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=303519;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:35:14,21 ./.:31:20,11 ./.:17:6,11 +chr20 350477 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25360969;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:30:9,21 ./.:28:11,17 1|0:31:22,9 +chr20 350477 . TA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=304799;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:21:14,7 ./.:34:10,24 ./.:39:14,25 +chr20 350646 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25360799;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:30:15,15 ./.:12:7,5 1|0:27:7,20 +chr20 350646 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=330033;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:32:20,12 1|1:40:22,18 ./.:33:22,11 +chr20 350660 . AAAAAAAAAAAAAAAAAG A 60 . QNAME=HG002-S9-H2-000001F;QSTART=304981;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.154772 GT:DP:AD 0|1:17:5,12 ./.:21:9,12 ./.:26:17,9 +chr20 351164 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=305467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:36:13,23 ./.:43:23,20 ./.:29:21,8 +chr20 352819 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=332204;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:19,23 1|1:38:23,15 1|1:22:12,10 +chr20 353673 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=333059;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:31:16,15 1|1:40:18,22 1|1:44:19,25 +chr20 354581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=308884;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:35:16,19 ./.:14:8,6 ./.:24:18,6 +chr20 355283 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=309586;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:20:5,15 ./.:41:25,16 ./.:32:19,13 +chr20 356342 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=335727;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:36:24,12 1|1:21:11,10 1|1:28:13,15 +chr20 356748 . ACC A 60 . QNAME=cluster19_000000F;QSTART=25405319;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD ./.:30:18,12 1|0:26:12,14 ./.:44:23,21 +chr20 356924 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=336307;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:30:8,22 1|1:14:9,5 1|1:18:10,8 +chr20 358579 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=337963;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:33:17,16 1|0:34:14,20 ./.:41:16,25 +chr20 358579 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312883;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 0|1:27:19,8 ./.:26:10,16 ./.:18:12,6 +chr20 358585 . T C 60 . QNAME=cluster19_000000F;QSTART=25403485;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:11:6,5 1|0:26:10,16 ./.:25:19,6 +chr20 358586 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=312887;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:35:24,11 ./.:34:9,25 ./.:44:20,24 +chr20 358841 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338223;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:16:10,6 0|1:28:8,20 1|1:26:5,21 +chr20 359400 . GCAC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=338783;QSTRAND=+;GCPCT=75;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.75 GT:DP:AD 1|0:25:8,17 0|1:32:14,18 1|1:31:13,18 +chr20 359869 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314170;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:24:14,10 1|0:41:16,25 ./.:17:10,7 +chr20 359913 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314214;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:43:19,24 1|0:36:23,13 ./.:31:7,24 +chr20 359914 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314215;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:21:12,9 1|0:34:19,15 ./.:20:12,8 +chr20 359916 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314217;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:22:14,8 1|0:37:21,16 ./.:42:22,20 +chr20 359924 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314225;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:22,8 1|0:28:5,23 ./.:24:11,13 +chr20 359930 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314231;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:37:20,17 1|0:37:18,19 ./.:28:17,11 +chr20 359931 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314232;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:18:10,8 1|0:25:13,12 ./.:34:22,12 +chr20 359947 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314248;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:22:7,15 1|0:43:23,20 ./.:12:5,7 +chr20 359953 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314254;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:11:6,5 1|0:26:16,10 ./.:30:20,10 +chr20 359954 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314255;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:40:22,18 1|0:44:19,25 ./.:26:19,7 +chr20 359955 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:30:15,15 1|0:26:9,17 ./.:31:16,15 +chr20 359960 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=314261;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:32:7,25 1|0:31:25,6 ./.:42:22,20 +chr20 359969 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=314270;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:27:8,19 1|0:31:21,10 ./.:39:15,24 +chr20 359998 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=314300;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:40:23,17 ./.:35:17,18 1|0:31:14,17 +chr20 360554 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314856;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:26:9,17 1|0:32:13,19 ./.:28:15,13 +chr20 360556 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=314858;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:20,18 1|0:36:18,18 ./.:24:15,9 +chr20 360622 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=314924;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:11:6,5 1|0:32:20,12 ./.:29:15,14 +chr20 361302 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=315604;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:48:23,25 1|0:34:25,9 ./.:24:15,9 +chr20 362051 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=316353;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:33:11,22 1|0:38:18,20 ./.:29:16,13 +chr20 362052 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=316354;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:40:24,16 1|0:34:14,20 ./.:29:8,21 +chr20 362185 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25349263;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:37:17,20 ./.:31:12,19 1|0:26:12,14 +chr20 362679 . A ATG 60 . QNAME=HG002-S9-H2-000001F;QSTART=316982;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 0|1:19:8,11 1|0:21:15,6 ./.:39:24,15 +chr20 363003 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317307;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:28:10,18 1|0:41:21,20 ./.:15:5,10 +chr20 363114 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=317418;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:7,25 1|0:32:7,25 ./.:40:16,24 +chr20 363119 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=317423;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:34:21,13 1|0:36:22,14 ./.:35:12,23 +chr20 363245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=342624;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:23:15,8 0|1:41:19,22 1|0:23:8,15 +chr20 363435 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=317739;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:14,10 1|0:22:7,15 ./.:38:17,21 +chr20 363987 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=318291;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:13,25 1|0:11:6,5 ./.:41:18,23 +chr20 364755 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=319059;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:11:5,6 1|0:35:23,12 ./.:34:20,14 +chr20 364763 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=344143;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 1|1:17:11,6 1|1:29:10,19 1|1:35:10,25 +chr20 365042 . G A 60 . QNAME=cluster19_000000F;QSTART=25397024;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:12,18 1|0:32:25,7 ./.:21:6,15 +chr20 365220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=344601;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:22:5,17 1|1:33:25,8 1|1:35:17,18 +chr20 365798 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=345180;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|1:35:14,21 ./.:29:17,12 0|1:21:8,13 +chr20 365798 . CTT C 60 . QNAME=cluster19_000000F;QSTART=25396268;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:26:13,13 1|0:29:8,21 ./.:33:9,24 +chr20 366032 . C T 60 . QNAME=cluster19_000000F;QSTART=25396036;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:5,19 1|0:28:9,19 ./.:13:8,5 +chr20 366058 . AGCCTCCCAAAGGAG A 60 . QNAME=cluster19_000000F;QSTART=25396010;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,2,1;ADCNT=0,3,0,0;LCR=0.912803 GT:DP:AD ./.:12:5,7 1|0:13:8,5 ./.:32:23,9 +chr20 366107 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=345487;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:12:6,6 1|1:42:23,19 1|1:31:25,6 +chr20 366279 . C T 60 . QNAME=cluster19_000000F;QSTART=25395803;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:45:24,21 1|0:43:21,22 ./.:34:14,20 +chr20 366317 . A G 60 . QNAME=cluster19_000000F;QSTART=25395765;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:22,18 1|0:46:22,24 ./.:33:16,17 +chr20 366341 . A G 60 . QNAME=cluster19_000000F;QSTART=25395741;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:40:19,21 1|0:33:14,19 ./.:14:7,7 +chr20 366365 . C A 60 . QNAME=cluster19_000000F;QSTART=25395717;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:18:12,6 1|0:30:12,18 ./.:31:13,18 +chr20 366711 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346091;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:25:11,14 ./.:23:8,15 1|1:29:18,11 +chr20 367006 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346386;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:29:17,12 1|0:44:22,22 1|1:37:23,14 +chr20 367079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346459;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:45:23,22 ./.:26:15,11 1|1:11:5,6 +chr20 367082 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346462;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:44:25,19 ./.:32:16,16 1|1:31:20,11 +chr20 367106 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346486;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:24,12 ./.:25:9,16 1|1:34:13,21 +chr20 367141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=346521;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:16,17 1|0:20:14,6 1|1:48:24,24 +chr20 367164 . TCGCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346545;QSTRAND=+;GCPCT=60;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.960964 GT:DP:AD 1|0:43:21,22 ./.:20:14,6 1|1:18:10,8 +chr20 367176 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=346552;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:26:14,12 ./.:42:17,25 1|1:36:14,22 +chr20 367214 . AAAACAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346591;QSTRAND=+;GCPCT=22;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.382102 GT:DP:AD 1|0:23:6,17 ./.:36:24,12 1|1:45:20,25 +chr20 367226 . A C 60 . QNAME=cluster19_000000F;QSTART=25394856;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:20,10 1|0:43:21,22 ./.:44:20,24 +chr20 367234 . A AAAAC 60 . QNAME=cluster19_000000F;QSTART=25394844;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.360964 GT:DP:AD ./.:29:8,21 1|0:36:24,12 ./.:28:17,11 +chr20 367235 . C A 60 . QNAME=cluster19_000000F;QSTART=25394843;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:12,9 1|0:41:21,20 ./.:29:13,16 +chr20 367244 . AAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346613;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|0:43:23,20 ./.:29:23,6 1|1:29:6,23 +chr20 367252 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346617;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:46:22,24 ./.:31:20,11 1|1:37:20,17 +chr20 367264 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321569;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:12,24 1|1:17:7,10 ./.:34:10,24 +chr20 367521 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=346886;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:25,10 0|1:38:17,21 ./.:11:6,5 +chr20 367522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=346887;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:24:18,6 ./.:15:5,10 ./.:38:16,22 +chr20 367522 . G C 60 . QNAME=cluster19_000000F;QSTART=327442;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:23:15,8 0|1:17:9,8 ./.:35:18,17 +chr20 367544 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321849;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:23,17 ./.:34:14,20 1|0:20:8,12 +chr20 367675 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=347040;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:12,6 ./.:45:21,24 0|1:34:19,15 +chr20 367690 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=321995;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:20:10,10 ./.:30:10,20 0|1:35:14,21 +chr20 367721 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=347087;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|0:37:15,22 0|1:34:25,9 1|0:28:19,9 +chr20 367877 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=347243;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:11,11 ./.:37:17,20 ./.:30:24,6 +chr20 368132 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322437;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:23:11,12 1|0:19:9,10 ./.:32:14,18 +chr20 368260 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=322565;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:13:7,6 1|0:20:11,9 ./.:28:6,22 +chr20 368284 . CTT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=322590;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:38:17,21 1|0:36:21,15 ./.:20:12,8 +chr20 368410 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322713;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:18:5,13 1|0:41:23,18 ./.:29:23,6 +chr20 368474 . C T 60 . QNAME=cluster19_000000F;QSTART=328395;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:22:14,8 0|1:40:21,19 1|0:40:17,23 +chr20 368491 . G A 60 . QNAME=cluster19_000000F;QSTART=328412;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:7,18 0|1:21:8,13 ./.:26:10,16 +chr20 368580 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322883;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:7,19 1|0:29:22,7 ./.:33:13,20 +chr20 368662 . G C 60 . QNAME=cluster19_000000F;QSTART=25393418;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:46:21,25 1|0:29:15,14 ./.:36:11,25 +chr20 368677 . ACT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=322981;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD 0|1:26:9,17 1|0:39:20,19 ./.:23:15,8 +chr20 369093 . T C 60 . QNAME=cluster19_000000F;QSTART=25392989;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:17:7,10 1|0:32:19,13 ./.:38:25,13 +chr20 369284 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25342176;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:46:25,21 ./.:19:7,12 1|0:27:16,11 +chr20 369514 . G A 60 . QNAME=cluster19_000000F;QSTART=25392568;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:12,25 1|0:26:11,15 ./.:25:20,5 +chr20 369594 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25341866;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:27:6,21 ./.:32:21,11 1|0:37:18,19 +chr20 369657 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25341802;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:37:20,17 ./.:13:8,5 1|1:31:11,20 +chr20 369657 . CAAAAAA C 60 . QNAME=cluster19_000000F;QSTART=25392425;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.295836 GT:DP:AD ./.:22:14,8 1|0:44:22,22 ./.:40:19,21 +chr20 369846 . T C 60 . QNAME=cluster19_000000F;QSTART=25392242;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:11,20 1|0:32:9,23 1|0:33:25,8 +chr20 369998 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=349364;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:28:7,21 ./.:31:11,20 ./.:48:25,23 +chr20 370237 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=349603;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:28:18,10 0|1:31:8,23 ./.:38:16,22 +chr20 370371 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=349737;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:30:5,25 1|1:20:12,8 ./.:18:13,5 +chr20 371300 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350666;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:10,21 0|1:35:22,13 ./.:39:19,20 +chr20 371526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=350892;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:33:8,25 1|1:25:16,9 ./.:16:7,9 +chr20 372007 . T C 60 . QNAME=cluster19_000000F;QSTART=25390081;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:8,17 1|0:42:18,24 ./.:29:12,17 +chr20 372073 . A G 60 . QNAME=cluster19_000000F;QSTART=25390015;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:24:8,16 1|0:28:19,9 ./.:16:8,8 +chr20 372441 . A G 60 . QNAME=cluster19_000000F;QSTART=25389647;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:26:12,14 1|0:23:16,7 ./.:20:12,8 +chr20 372564 . A C 60 . QNAME=cluster19_000000F;QSTART=25389524;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:48:23,25 1|0:31:17,14 ./.:28:14,14 +chr20 372676 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=352042;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:19,16 1|1:37:25,12 ./.:12:7,5 +chr20 372735 . G T 60 . QNAME=cluster19_000000F;QSTART=25389353;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:6,24 1|0:31:18,13 ./.:44:20,24 +chr20 373053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=352419;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:23:6,17 1|1:28:10,18 ./.:22:12,10 +chr20 373694 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353060;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:29:20,9 0|1:13:5,8 ./.:22:5,17 +chr20 373749 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353115;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:28:22,6 0|1:38:15,23 ./.:26:11,15 +chr20 374221 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353587;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:27:21,6 0|1:32:13,19 ./.:31:23,8 +chr20 374323 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=353689;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:18:11,7 1|1:25:6,19 ./.:27:17,10 +chr20 374523 . A G 60 . QNAME=cluster19_000000F;QSTART=25387565;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:35:20,15 1|0:47:23,24 ./.:36:21,15 +chr20 374580 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=353946;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:22:6,16 0|1:30:13,17 ./.:20:15,5 +chr20 374601 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=353967;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:28:17,11 0|1:29:21,8 ./.:34:20,14 +chr20 374675 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354041;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:19,12 1|1:42:17,25 ./.:35:17,18 +chr20 374716 . C T 60 . QNAME=cluster19_000000F;QSTART=334637;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:18,13 0|1:23:8,15 ./.:32:23,9 +chr20 374726 . C T 60 . QNAME=cluster19_000000F;QSTART=334647;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:19:10,9 0|1:42:23,19 ./.:39:19,20 +chr20 374740 . G GGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=354107;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD 1|0:30:11,19 0|1:36:22,14 ./.:15:8,7 +chr20 374743 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354111;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:9,8 0|1:33:14,19 ./.:29:14,15 +chr20 374744 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354112;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:19:11,8 0|1:10:5,5 ./.:27:10,17 +chr20 374747 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354115;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:30:25,5 0|1:34:19,15 ./.:12:7,5 +chr20 374754 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354122;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:17,19 0|1:31:19,12 ./.:28:5,23 +chr20 374836 . T C 60 . QNAME=cluster19_000000F;QSTART=25387252;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:34:22,12 1|0:20:7,13 ./.:24:14,10 +chr20 374900 . C G 60 . QNAME=cluster19_000000F;QSTART=25387188;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:16:7,9 1|0:24:19,5 ./.:26:17,9 +chr20 374905 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=354274;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:23:10,13 1|1:39:19,20 ./.:27:5,22 +chr20 375120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=354489;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:29:23,6 1|1:41:22,19 ./.:23:13,10 +chr20 375218 . G GA 60 . QNAME=cluster19_000000F;QSTART=335143;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:29:19,10 0|1:29:12,17 ./.:22:14,8 +chr20 375218 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354588;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:26:18,8 ./.:43:21,22 ./.:24:10,14 +chr20 375359 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=354727;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:28:20,8 1|1:34:18,16 ./.:48:23,25 +chr20 375590 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=354958;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:14,20 0|1:41:17,24 ./.:36:25,11 +chr20 376026 . T TCAAA 60 . QNAME=cluster19_000000F;QSTART=25386057;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.685475 GT:DP:AD ./.:26:18,8 1|0:32:17,15 ./.:21:14,7 +chr20 376031 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=355400;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.360964 GT:DP:AD 1|0:42:25,17 0|1:20:7,13 ./.:32:23,9 +chr20 376031 . A C 60 . QNAME=cluster19_000000F;QSTART=25386052;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:18:9,9 1|0:44:21,23 ./.:32:19,13 +chr20 376141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=355513;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:18:7,11 1|1:36:17,19 ./.:24:9,15 +chr20 376217 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=355589;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:24:7,17 1|1:43:25,18 ./.:29:20,9 +chr20 376406 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355778;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:47:22,25 1|1:18:7,11 ./.:27:20,7 +chr20 376484 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=355856;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:24,14 1|1:36:14,22 ./.:25:6,19 +chr20 376926 . T C 60 . QNAME=cluster19_000000F;QSTART=25385157;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:28:8,20 1|0:12:7,5 ./.:21:10,11 +chr20 376988 . C T 60 . QNAME=cluster19_000000F;QSTART=25385095;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:16,25 1|0:31:14,17 ./.:23:10,13 +chr20 377035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356407;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:14,13 1|1:32:23,9 ./.:47:24,23 +chr20 377056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356428;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:16:9,7 1|1:34:17,17 ./.:28:6,22 +chr20 377153 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=331455;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:43:20,23 ./.:18:11,7 ./.:36:21,15 +chr20 377153 . ATTTTTT A 60 . QNAME=cluster19_000000F;QSTART=25384930;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.295836 GT:DP:AD ./.:31:20,11 1|0:30:19,11 ./.:39:14,25 +chr20 377184 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=356556;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:24:12,12 1|1:35:11,24 ./.:27:9,18 +chr20 377366 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=356738;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:43:22,21 1|1:25:7,18 ./.:33:24,9 +chr20 377503 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=356876;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:19:5,14 1|1:24:6,18 ./.:34:25,9 +chr20 377680 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25317935;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:42:19,23 ./.:30:16,14 0|1:19:10,9 +chr20 377680 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=357052;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:42:25,17 1|1:17:7,10 ./.:24:16,8 +chr20 377737 . T C 60 . QNAME=cluster19_000000F;QSTART=25384354;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:26:9,17 1|1:26:10,16 ./.:48:25,23 +chr20 377922 . G A 60 . QNAME=cluster19_000000F;QSTART=25384169;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:6,19 1|1:35:17,18 ./.:31:14,17 +chr20 377975 . A G 60 . QNAME=cluster19_000000F;QSTART=25384116;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:13,12 1|1:14:9,5 ./.:37:12,25 +chr20 378291 . C T 60 . QNAME=cluster19_000000F;QSTART=25383800;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:8,17 1|1:25:14,11 ./.:31:12,19 +chr20 378708 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=333008;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:31:24,7 ./.:35:11,24 ./.:15:5,10 +chr20 378907 . T A 60 . QNAME=cluster19_000000F;QSTART=338834;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:18,6 0|1:47:24,23 ./.:44:21,23 +chr20 379030 . C T 60 . QNAME=cluster19_000000F;QSTART=25383061;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:21:7,14 1|1:49:24,25 ./.:27:10,17 +chr20 379398 . G A 60 . QNAME=cluster19_000000F;QSTART=25382693;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:15,22 1|1:25:13,12 ./.:32:14,18 +chr20 379418 . T C 60 . QNAME=cluster19_000000F;QSTART=25382673;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:24:13,11 1|0:41:16,25 ./.:41:21,20 +chr20 379468 . G A 60 . QNAME=cluster19_000000F;QSTART=25382623;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:23:5,18 1|1:36:17,19 ./.:43:22,21 +chr20 379581 . A C 60 . QNAME=cluster19_000000F;QSTART=25382510;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:9,22 1|0:35:24,11 ./.:32:16,16 +chr20 379662 . T C 60 . QNAME=cluster19_000000F;QSTART=25382429;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:12,24 1|1:39:18,21 ./.:29:20,9 +chr20 379675 . G GA 60 . QNAME=cluster19_000000F;QSTART=339603;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:27:10,17 0|1:21:15,6 ./.:29:5,24 +chr20 379699 . G C 60 . QNAME=cluster19_000000F;QSTART=25382392;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:24:13,11 1|1:16:5,11 ./.:39:22,17 +chr20 379759 . T C 60 . QNAME=cluster19_000000F;QSTART=25382332;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:20,16 1|1:45:20,25 ./.:25:13,12 +chr20 379794 . T C 60 . QNAME=cluster19_000000F;QSTART=25382297;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:19:13,6 1|1:16:7,9 ./.:32:19,13 +chr20 379816 . C T 60 . QNAME=cluster19_000000F;QSTART=25382275;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:12,25 1|1:31:6,25 ./.:39:16,23 +chr20 379966 . G T 60 . QNAME=cluster19_000000F;QSTART=25382125;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:22,15 1|1:40:15,25 ./.:32:18,14 +chr20 380070 . G C 60 . QNAME=cluster19_000000F;QSTART=25382021;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:39:17,22 1|1:34:18,16 ./.:22:16,6 +chr20 380078 . G C 60 . QNAME=cluster19_000000F;QSTART=25382013;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:21,11 1|1:38:13,25 ./.:22:8,14 +chr20 380145 . T C 60 . QNAME=cluster19_000000F;QSTART=340073;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:38:24,14 0|1:25:18,7 ./.:37:19,18 +chr20 380283 . TAA T 60 . QNAME=cluster19_000000F;QSTART=25381808;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:28:9,19 1|1:32:14,18 ./.:33:22,11 +chr20 380289 . A C 60 . QNAME=cluster19_000000F;QSTART=25381804;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:31:20,11 1|1:17:8,9 ./.:28:21,7 +chr20 380548 . T C 60 . QNAME=cluster19_000000F;QSTART=25381545;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:13,12 1|1:24:17,7 ./.:23:7,16 +chr20 380662 . G A 60 . QNAME=cluster19_000000F;QSTART=25381431;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:8,16 1|1:43:22,21 1|0:15:6,9 +chr20 380663 . C A 60 . QNAME=cluster19_000000F;QSTART=25381430;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:22:9,13 1|1:40:16,24 1|0:23:7,16 +chr20 380672 . A G 60 . QNAME=cluster19_000000F;QSTART=25381421;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:22:8,14 1|1:17:5,12 1|0:27:12,15 +chr20 380679 . T C 60 . QNAME=cluster19_000000F;QSTART=25381414;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:10,22 1|1:34:24,10 1|0:23:18,5 +chr20 380684 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25330774;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:42:25,17 ./.:28:9,19 1|0:38:25,13 +chr20 380684 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=360055;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:15:10,5 1|1:31:9,22 ./.:24:14,10 +chr20 380878 . T TGATTAGCTCCGGTTTGCATCACCCGGACCGGGGGATTAGCTCCGGTTTGCATCACCCGGACCGGGG 60 . QNAME=cluster19_000000F;QSTART=25381150;QSTRAND=-;SVTYPE=INS;SVLEN=66;HOMPCT=1.7;REMAP=tandem;REMAPHits=chr20:380877-380944.100,chr20:380910-380977.100;GCPCT=62;GTCNT=2,0,1,0;NumNeighbors=0;NeighId=4;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.970592 GT:DP:AD ./.:21:9,12 1/0:15:8,7 ./.:25:20,5 +chr20 381233 . G A 60 . QNAME=cluster19_000000F;QSTART=25380795;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:23,20 1|0:24:7,17 ./.:34:10,24 +chr20 381358 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=360727;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:28:17,11 ./.:23:6,17 ./.:31:23,8 +chr20 381423 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25330068;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:26:6,20 ./.:36:14,22 1|0:40:19,21 +chr20 381585 . AG A 60 . QNAME=cluster23_scaffold_3;QSTART=25329906;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:24:6,18 ./.:32:17,15 1|0:33:22,11 +chr20 381637 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361006;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:41:21,20 1|1:36:16,20 0|1:26:13,13 +chr20 381684 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=361053;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:11,18 0|1:31:10,21 1|0:34:25,9 +chr20 381742 . T TG 60 . QNAME=HG002-S9-H2-000001F;QSTART=336041;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:35:16,19 1|0:28:6,22 1|0:20:15,5 +chr20 381797 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=336096;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:28:23,5 0|1:32:8,24 1|0:33:8,25 +chr20 382099 . C CTG 60 . QNAME=cluster19_000000F;QSTART=25379926;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD ./.:39:24,15 1|0:19:12,7 ./.:39:18,21 +chr20 382099 . C CTGTGTGTG 60 . QNAME=cluster23_scaffold_3;QSTART=25329384;QSTRAND=-;GCPCT=55;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.696074 GT:DP:AD ./.:26:20,6 ./.:26:8,18 1|0:40:16,24 +chr20 382124 . TGTGC T 60 . QNAME=cluster23_scaffold_2;QSTART=25313491;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.760964 GT:DP:AD ./.:22:6,16 ./.:35:12,23 0|1:26:8,18 +chr20 383089 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25328394;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:14,17 ./.:14:7,7 1|0:36:15,21 +chr20 383651 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=363020;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:44:20,24 1|0:34:13,21 0|1:30:16,14 +chr20 384031 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25327451;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:14:9,5 ./.:29:15,14 1|0:21:16,5 +chr20 384050 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25311569;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:23,19 ./.:33:12,21 0|1:29:16,13 +chr20 384103 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25327379;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:38:22,16 ./.:20:11,9 1|0:44:23,21 +chr20 385414 . AT A 60 . QNAME=cluster19_000000F;QSTART=345340;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:24:13,11 0|1:37:13,24 1|0:39:17,22 +chr20 385860 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25309758;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:45:22,23 ./.:43:20,23 0|1:25:10,15 +chr20 385969 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=365338;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:17:7,10 ./.:19:5,14 0|1:41:18,23 +chr20 386036 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=365405;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:16,9 1|1:50:25,25 1|1:48:24,24 +chr20 386320 . T C 60 . QNAME=cluster19_000000F;QSTART=346244;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:24:5,19 0|1:35:25,10 1|0:25:7,18 +chr20 387554 . GA G 60 . QNAME=cluster19_000000F;QSTART=347479;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:44:21,23 0|1:24:6,18 ./.:24:13,11 +chr20 391001 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25320481;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:29:17,12 ./.:26:19,7 1|0:31:19,12 +chr20 391001 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 0|1:27:22,5 1|0:15:5,10 0|1:30:25,5 +chr20 391003 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345301;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:24,22 1|0:40:19,21 0|1:36:24,12 +chr20 391137 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=345435;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:39:18,21 1|0:28:23,5 0|1:46:25,21 +chr20 391138 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=345436;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:32:25,7 1|0:42:17,25 0|1:40:24,16 +chr20 391328 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=345626;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:36:24,12 1|0:39:23,16 0|1:18:6,12 +chr20 392021 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=346320;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:40:17,23 ./.:27:22,5 ./.:17:5,12 +chr20 392557 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=346855;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:26:15,11 1|0:29:12,17 1|1:26:21,5 +chr20 393192 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=347407;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,2,1;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:13:6,7 1|0:35:20,15 0|1:13:8,5 +chr20 393337 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=347553;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:24:18,6 1|0:23:9,14 1|1:23:7,16 +chr20 393417 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=347631;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:21:12,9 1|0:38:16,22 0|1:28:11,17 +chr20 393740 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=347954;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:13:5,8 1|0:44:21,23 0|1:23:14,9 +chr20 393795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=348009;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:17:9,8 1|0:40:19,21 0|1:39:17,22 +chr20 394032 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=348247;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:39:18,21 1|0:30:12,18 0|1:15:8,7 +chr20 394119 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348334;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:8,25 1|0:31:15,16 0|1:26:18,8 +chr20 394301 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=348516;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:11:5,6 ./.:28:17,11 0|1:31:6,25 +chr20 394462 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=348677;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:14:8,6 1|1:44:21,23 0|1:21:14,7 +chr20 394799 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25316682;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:37:17,20 ./.:46:23,23 1|0:35:10,25 +chr20 394955 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=349170;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:25:11,14 ./.:31:22,9 0|1:24:14,10 +chr20 395162 . CT C 60 . QNAME=cluster19_000000F;QSTART=25366946;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:21:10,11 1|0:22:8,14 ./.:41:22,19 +chr20 396582 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=350797;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:16:10,6 1|0:30:13,17 0|1:50:25,25 +chr20 397598 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=351813;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:38:24,14 1|0:43:21,22 0|1:21:14,7 +chr20 397600 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25298101;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:30:25,5 ./.:39:24,15 0|1:14:8,6 +chr20 397886 . A AC 60 . QNAME=cluster23_scaffold_3;QSTART=25313594;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:23:13,10 ./.:41:16,25 1|0:23:10,13 +chr20 398287 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=352502;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:44:20,24 1|0:28:5,23 0|1:33:24,9 +chr20 398312 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352527;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:23,23 1|0:32:13,19 0|1:24:14,10 +chr20 398313 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352528;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:33:24,9 1|0:32:18,14 0|1:14:6,8 +chr20 398315 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352530;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:31:21,10 1|0:13:7,6 0|1:28:13,15 +chr20 398320 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352535;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:41:20,21 1|0:25:20,5 0|1:35:19,16 +chr20 398324 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=352539;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:35:13,22 1|0:39:16,23 0|1:36:23,13 +chr20 398327 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=352542;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:29:24,5 1|0:31:21,10 0|1:40:19,21 +chr20 398334 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=352549;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:36:21,15 1|0:16:11,5 0|1:31:22,9 +chr20 398897 . C T 60 . QNAME=cluster19_000000F;QSTART=25363212;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:22:13,9 1|0:20:8,12 ./.:16:5,11 +chr20 399283 . A G 60 . QNAME=cluster19_000000F;QSTART=25362826;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:8,21 1|1:36:14,22 1|1:27:13,14 +chr20 399958 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=379327;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:7,23 1|0:48:25,23 ./.:23:6,17 +chr20 400146 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=379516;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:18:5,13 1|1:30:7,23 1|0:19:12,7 +chr20 400336 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379706;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:22:7,15 1|1:41:25,16 1|0:20:12,8 +chr20 400547 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=379917;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:44:25,19 1|1:14:6,8 1|0:36:20,16 +chr20 400677 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=380047;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:17,14 1|1:32:25,7 1|0:27:6,21 +chr20 400755 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380125;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:32:7,25 1|0:24:15,9 ./.:22:17,5 +chr20 400797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380167;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:23:10,13 1|1:23:9,14 1|0:34:10,24 +chr20 400887 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=380257;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:25,7 1|1:38:16,22 1|0:18:5,13 +chr20 401685 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=381056;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|0:34:24,10 1|1:23:18,5 ./.:38:25,13 +chr20 401685 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25309792;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:27:19,8 ./.:28:12,16 1|0:19:11,8 +chr20 401702 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=381073;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:23,15 1|1:26:14,12 1|0:47:25,22 +chr20 401915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381286;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:35:20,15 1|1:42:19,23 1|0:44:25,19 +chr20 401983 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381354;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:40:22,18 1|1:20:11,9 1|0:25:17,8 +chr20 402232 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=381603;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:19,24 1|1:35:20,15 1|0:39:14,25 +chr20 402478 . C CAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=356694;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 0|1:28:13,15 ./.:32:12,20 ./.:25:13,12 +chr20 402478 . C CAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25293220;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD ./.:41:24,17 ./.:38:17,21 0|1:35:18,17 +chr20 402478 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=381850;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.251629 GT:DP:AD 1|0:16:8,8 1|0:37:16,21 ./.:34:13,21 +chr20 402492 . A AT 60 . QNAME=cluster19_000000F;QSTART=362418;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:36:15,21 0|1:14:5,9 1|0:16:6,10 +chr20 402498 . A T 60 . QNAME=cluster19_000000F;QSTART=362424;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:20,19 0|1:43:18,25 1|0:23:5,18 +chr20 402504 . A T 60 . QNAME=cluster19_000000F;QSTART=362430;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:12,16 0|1:30:15,15 1|0:34:24,10 +chr20 402509 . A T 60 . QNAME=cluster19_000000F;QSTART=362435;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:19:14,5 0|1:32:11,21 1|0:28:22,6 +chr20 403076 . C T 60 . QNAME=cluster19_000000F;QSTART=363002;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:22:16,6 0|1:38:15,23 1|0:38:16,22 +chr20 403697 . A G 60 . QNAME=cluster19_000000F;QSTART=363623;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:39:17,22 0|1:17:8,9 1|0:13:8,5 +chr20 403859 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383222;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:18,20 1|0:45:24,21 ./.:20:6,14 +chr20 404000 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=383363;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:14:7,7 1|1:30:11,19 1|0:25:19,6 +chr20 404254 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383617;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:21:7,14 1|0:34:11,23 ./.:25:12,13 +chr20 404408 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383771;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:24,11 1|1:16:10,6 1|0:38:22,16 +chr20 404596 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=383959;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:12,25 1|1:40:21,19 1|1:20:15,5 +chr20 405155 . T TCACA 60 . QNAME=cluster19_000000F;QSTART=365082;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.760964 GT:DP:AD ./.:29:16,13 0|1:33:21,12 1|0:17:11,6 +chr20 405155 . TCA T 60 . QNAME=cluster19_000000F;QSTART=25356960;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:35:23,12 1|0:39:17,22 ./.:28:5,23 +chr20 405220 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=384583;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:27:14,13 1|1:28:16,12 1|0:33:11,22 +chr20 405345 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=384709;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:27:11,16 1|0:38:20,18 ./.:23:5,18 +chr20 405478 . C T 60 . QNAME=cluster19_000000F;QSTART=365408;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:31:13,18 0|1:30:16,14 1|0:22:12,10 +chr20 405820 . A G 60 . QNAME=cluster19_000000F;QSTART=365750;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:17,16 0|1:46:22,24 1|0:31:15,16 +chr20 405931 . GTTCT G 60 . QNAME=cluster19_000000F;QSTART=365862;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.685475 GT:DP:AD ./.:26:6,20 0|1:31:7,24 1|0:33:14,19 +chr20 405942 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360160;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 0|1:16:6,10 ./.:30:19,11 ./.:24:19,5 +chr20 406708 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25288989;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:21:6,15 ./.:45:21,24 0|1:16:6,10 +chr20 406708 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=360925;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:35:13,22 ./.:39:20,19 ./.:22:10,12 +chr20 406708 . CAAA C 60 . QNAME=cluster19_000000F;QSTART=366635;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:26:14,12 0|1:41:23,18 1|0:29:11,18 +chr20 406732 . A AAAAAAAAAAAAG 60 . QNAME=HG002-S9-H1-000001F;QSTART=386097;QSTRAND=+;GCPCT=7;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.195622 GT:DP:AD 1|0:14:8,6 ./.:37:20,17 ./.:34:24,10 +chr20 406732 . A AAAAAAAAAAG 60 . QNAME=cluster19_000000F;QSTART=25355374;QSTRAND=-;GCPCT=9;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.219748 GT:DP:AD ./.:45:21,24 1|0:30:23,7 ./.:36:12,24 +chr20 407013 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=386390;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:39:24,15 1|1:36:14,22 1|0:29:12,17 +chr20 407083 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=386460;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:24:10,14 1|0:41:17,24 ./.:34:9,25 +chr20 407113 . A G 60 . QNAME=cluster19_000000F;QSTART=367037;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:20,21 0|1:33:8,25 1|0:36:14,22 +chr20 407171 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=386548;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:24,9 1|0:39:20,19 ./.:21:6,15 +chr20 407872 . C T 60 . QNAME=cluster19_000000F;QSTART=367796;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:23,10 0|1:33:8,25 1|0:18:11,7 +chr20 407964 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387342;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:40:24,16 1|0:12:5,7 ./.:30:8,22 +chr20 407977 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=387354;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:25:6,19 1|0:21:8,13 ./.:24:9,15 +chr20 408008 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=387384;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:30:16,14 ./.:19:6,13 ./.:33:8,25 +chr20 408028 . G GGCCCCGCCC 60 . QNAME=HG002-S9-H2-000001F;QSTART=362274;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.440645 GT:DP:AD 0|1:18:11,7 ./.:31:18,13 0|1:35:22,13 +chr20 408029 . G GCCCCGCCCA 60 . QNAME=cluster19_000000F;QSTART=367992;QSTRAND=+;GCPCT=90;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.57839 GT:DP:AD ./.:12:6,6 0|1:20:9,11 1|0:25:9,16 +chr20 408057 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=387432;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|1:23:13,10 1|1:34:24,10 1|1:24:15,9 +chr20 408812 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363067;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:15,18 0|1:50:25,25 1|1:24:18,6 +chr20 409237 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363492;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:22,8 0|1:19:5,14 1|1:42:18,24 +chr20 409291 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=363547;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:42:22,20 ./.:29:24,5 ./.:19:14,5 +chr20 409340 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=363594;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:34:23,11 0|1:27:13,14 1|1:47:24,23 +chr20 409466 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=363721;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:28:10,18 ./.:28:19,9 ./.:26:20,6 +chr20 410526 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=364779;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:26:10,16 0|1:39:16,23 1|1:23:5,18 +chr20 412325 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=366579;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:17:11,6 ./.:42:17,25 ./.:31:23,8 +chr20 413334 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=367586;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:40:15,25 0|1:17:12,5 1|1:34:19,15 +chr20 413917 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368170;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:41:24,17 0|1:38:24,14 1|1:21:16,5 +chr20 413941 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368192;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:26:12,14 0|1:27:20,7 1|1:22:13,9 +chr20 414091 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=368343;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:31:21,10 0|1:39:21,18 1|1:13:6,7 +chr20 414091 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=393467;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:40:15,25 ./.:37:12,25 ./.:37:19,18 +chr20 414317 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=368569;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:27:15,12 0|1:19:12,7 1|1:20:12,8 +chr20 415178 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=369430;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 0|1:29:24,5 0|1:29:23,6 1|1:22:14,8 +chr20 415379 . A AAAAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=394754;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.360964 GT:DP:AD 1|1:24:5,19 1|1:32:20,12 1|1:17:6,11 +chr20 415512 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=394890;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:15:9,6 1|0:20:8,12 ./.:28:15,13 +chr20 416154 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25295271;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:40:15,25 ./.:30:21,9 1|0:25:19,6 +chr20 416334 . G T 60 . QNAME=cluster19_000000F;QSTART=376310;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:44:20,24 0|1:22:12,10 1|0:41:21,20 +chr20 417284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=396662;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:43:21,22 1|1:40:18,22 1|1:34:17,17 +chr20 417395 . T TTG 60 . QNAME=cluster23_scaffold_3;QSTART=25294028;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:24:16,8 ./.:32:21,11 1|1:38:13,25 +chr20 417634 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=397012;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:41:16,25 1|0:40:20,20 ./.:28:18,10 +chr20 418430 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397808;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:22,14 1|0:31:9,22 ./.:39:16,23 +chr20 418432 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=397810;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:15:6,9 1|0:31:24,7 ./.:28:9,19 +chr20 418579 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372835;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:27:15,12 ./.:18:12,6 1|1:28:14,14 +chr20 418601 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372857;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:37:25,12 ./.:35:24,11 1|1:49:24,25 +chr20 418603 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=372859;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:36:17,19 ./.:36:21,15 1|1:16:9,7 +chr20 418658 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=372914;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:35:24,11 ./.:40:17,23 1|1:15:9,6 +chr20 419117 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=398495;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:25:10,15 1|0:35:25,10 1|1:27:8,19 +chr20 419860 . AGTGACCCTGCACCTGGCT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=374117;QSTRAND=+;GCPCT=63;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.965648 GT:DP:AD 0|1:24:19,5 ./.:14:7,7 1|1:27:8,19 +chr20 420228 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=374466;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:17,19 ./.:25:11,14 1|1:29:10,19 +chr20 420465 . A AG 60 . QNAME=HG002-S9-H2-000001F;QSTART=374704;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:19:11,8 ./.:22:8,14 1|1:24:5,19 +chr20 420561 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=399939;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:31:17,14 1|0:37:21,16 1|1:47:25,22 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCATCCCCCGTCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 60 . QNAME=HG002-S9-H1-000001F;QSTART=400044;QSTRAND=+;SVTYPE=INS;SVLEN=226;HOMPCT=37;REMAP=partial;GCPCT=76;GTCNT=1,0,1,1;NumNeighbors=1;NeighId=5;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.67651 GT:DP:AD 1/0:45:21,24 1/1:27:20,7 ./.:31:15,16 +chr20 420665 . G GCCCACCCCATCCCCCGTCCCCATCCCCCATCCCCCGTCCCCCGTCCCCATCCCCCGTCCCCCATCTCCTGTCCCCCGTCCCCATCCCCCGTCCCCCGTCCCCCATCCCATCCCCCACCCCCATCCCCCGTCCCCCGTCCCCATCCCCCATCCCCCATCCCCCATCCCCCGTCCGCCGTCCCCCATCTCCTGTCCCCCGTCCCCCATCCCCCGTCCCCATCCCCCACC 61 . QNAME=HG002-S9-H2-000001F;QSTART=374905;QSTRAND=+;SVTYPE=INS;SVLEN=227;HOMPCT=37;REMAP=partial;GCPCT=76;GTCNT=1,0,1,1;NumNeighbors=1;NeighId=5;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.681844 GT:DP:AD 0/1:27:19,8 ./.:40:20,20 1/1:23:7,16 +chr20 421409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=401013;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:29:23,6 1|0:33:15,18 1|1:17:6,11 +chr20 421527 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=375993;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:29:24,5 ./.:36:17,19 1|1:37:13,24 +chr20 422066 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=401670;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:31:24,7 1|0:40:16,24 1|1:30:23,7 +chr20 422277 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=376743;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:44:23,21 ./.:42:22,20 1|1:29:14,15 +chr20 422514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402119;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:42:17,25 1|0:50:25,25 ./.:20:5,15 +chr20 422548 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=402151;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:26:8,18 1|0:30:22,8 ./.:34:19,15 +chr20 422567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=402170;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:26:11,15 1|0:38:15,23 ./.:32:13,19 +chr20 423009 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=402612;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:40:21,19 1|0:26:20,6 1|1:31:20,11 +chr20 423705 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=403308;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:22:17,5 1|0:38:15,23 1|1:43:22,21 +chr20 423763 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403366;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:40:20,20 1|0:30:25,5 1|1:17:7,10 +chr20 424272 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=403875;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:34:17,17 1|0:47:25,22 1|1:26:17,9 +chr20 424413 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=404017;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:38:17,21 1|0:21:6,15 1|0:31:19,12 +chr20 425626 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=405231;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:14:6,8 1|0:31:21,10 1|1:41:16,25 +chr20 426816 . C CT 60 . QNAME=cluster19_000000F;QSTART=25335060;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:16:9,7 1|0:27:22,5 1|0:40:22,18 +chr20 429226 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25281985;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:31:23,8 ./.:34:24,10 1|1:31:10,21 +chr20 429226 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=383692;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:31:21,10 ./.:32:16,16 ./.:33:15,18 +chr20 429249 . G A 60 . QNAME=cluster19_000000F;QSTART=389451;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:17,19 0|1:30:10,20 ./.:17:9,8 +chr20 431198 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=410801;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:33:8,25 1|0:34:24,10 1|1:36:13,23 +chr20 433739 . AGGCTACCCACACTTCCTG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=413343;QSTRAND=+;GCPCT=57;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.946204 GT:DP:AD 1|1:46:21,25 1|0:32:15,17 1|1:43:23,20 +chr20 433902 . T C 60 . QNAME=cluster19_000000F;QSTART=25327992;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:46:25,21 1|0:27:9,18 ./.:15:8,7 +chr20 434000 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=25277228;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:14:5,9 ./.:15:9,6 1|1:20:8,12 +chr20 434001 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=413586;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:16:9,7 1|0:36:12,24 1|1:28:12,16 +chr20 434561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=414146;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:49:24,25 1|0:39:23,16 1|1:13:8,5 +chr20 435505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=415090;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:10,20 1|0:25:18,7 1|1:45:20,25 +chr20 436968 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=416553;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:25:19,6 1|0:28:19,9 1|1:13:5,8 +chr20 437555 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=417140;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:21,22 1|0:38:17,21 1|1:26:19,7 +chr20 438423 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=418008;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:32:25,7 1|0:39:22,17 ./.:38:24,14 +chr20 439461 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=419046;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:41:22,19 1|0:36:25,11 ./.:30:18,12 +chr20 441161 . T TCCA 60 . QNAME=HG002-S9-H1-000001F;QSTART=420747;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.75 GT:DP:AD 1|1:32:17,15 1|0:31:18,13 ./.:12:6,6 +chr20 443554 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=423142;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:28:18,10 1|0:36:16,20 ./.:38:24,14 +chr20 443921 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=423509;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:27:17,10 1|0:19:9,10 ./.:36:11,25 +chr20 444453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424041;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:48:25,23 1|0:18:13,5 ./.:27:17,10 +chr20 444562 . GTTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=424151;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.360964 GT:DP:AD 1|0:39:14,25 1|0:34:13,21 ./.:29:7,22 +chr20 444790 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=424374;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:30:20,10 1|0:45:23,22 ./.:29:16,13 +chr20 444962 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=424546;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:40:20,20 1|0:21:11,10 ./.:34:17,17 +chr20 445789 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=425373;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:22,20 1|0:35:17,18 ./.:20:7,13 +chr20 446426 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=426010;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:17:8,9 1|0:39:24,15 ./.:26:17,9 +chr20 446529 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426113;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:21:8,13 1|0:17:6,11 ./.:26:18,8 +chr20 446943 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25264284;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:17:9,8 ./.:40:20,20 1|1:36:22,14 +chr20 446943 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=426528;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:35:19,16 1|0:25:8,17 ./.:16:9,7 +chr20 447123 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25248333;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:23:16,7 ./.:40:20,20 0|1:15:8,7 +chr20 447395 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=426978;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:28:8,20 1|0:22:17,5 ./.:31:17,14 +chr20 448123 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=427706;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:13,23 1|0:24:12,12 ./.:39:22,17 +chr20 448284 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=427867;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:26:8,18 1|0:29:7,22 ./.:21:11,10 +chr20 448552 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428135;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:22:7,15 1|0:22:11,11 ./.:24:7,17 +chr20 448689 . G GA 60 . QNAME=cluster19_000000F;QSTART=25313206;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:31:7,24 1|0:47:25,22 1|0:41:17,24 +chr20 448689 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=428273;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:31:10,21 ./.:44:25,19 ./.:19:12,7 +chr20 448841 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25262384;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:38:13,25 ./.:28:21,7 1|0:37:18,19 +chr20 449078 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=428660;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:36:21,15 1|0:30:15,15 ./.:37:21,16 +chr20 449153 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=428736;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:32:25,7 1|0:27:18,9 ./.:31:15,16 +chr20 449266 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=428850;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:11,24 1|0:25:9,16 ./.:34:25,9 +chr20 449285 . T TA 60 . QNAME=cluster19_000000F;QSTART=409488;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:21:9,12 0|1:23:7,16 ./.:33:18,15 +chr20 449285 . T TAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=428870;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.295836 GT:DP:AD 1|0:26:18,8 1|0:21:7,14 ./.:20:8,12 +chr20 449362 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25261863;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:38:20,18 ./.:28:15,13 1|0:39:21,18 +chr20 449514 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=429105;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:30:11,19 1|0:18:5,13 1|1:29:10,19 +chr20 450092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=429681;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:40:24,16 1|0:44:24,20 ./.:24:9,15 +chr20 450315 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25245141;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:29:6,23 ./.:34:25,9 0|1:34:23,11 +chr20 450858 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=430447;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:39:18,21 1|0:49:24,25 ./.:28:18,10 +chr20 452042 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=431631;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:12,5 1|0:33:11,22 ./.:32:7,25 +chr20 452135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=431724;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:20:7,13 1|0:44:25,19 ./.:22:17,5 +chr20 453153 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25242302;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:40:24,16 ./.:33:17,16 0|1:39:23,16 +chr20 453153 . C CAA 60 . QNAME=cluster23_scaffold_3;QSTART=25258071;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0.459148 GT:DP:AD ./.:29:20,9 ./.:10:5,5 1|0:28:20,8 +chr20 453153 . CAAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=432743;QSTRAND=+;GCPCT=10;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.234498 GT:DP:AD 1|0:30:17,13 1|0:30:21,9 ./.:30:18,12 +chr20 453460 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433040;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:44:21,23 1|0:13:6,7 ./.:30:19,11 +chr20 453539 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=433120;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:50:25,25 1|0:29:19,10 ./.:26:19,7 +chr20 453540 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25257683;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:42:17,25 ./.:32:15,17 1|1:32:14,18 +chr20 453540 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=433121;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:36:16,20 1|0:21:12,9 ./.:30:18,12 +chr20 453995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=433576;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:11,24 1|0:15:6,9 ./.:44:24,20 +chr20 454087 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433668;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:17,15 1|0:21:6,15 ./.:16:9,7 +chr20 454236 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=408684;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 0|1:21:13,8 ./.:22:11,11 ./.:21:11,10 +chr20 454236 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25307660;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:36:13,23 1|0:38:22,16 ./.:40:23,17 +chr20 454236 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=433818;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|0:21:13,8 ./.:43:19,24 ./.:37:14,23 +chr20 454295 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=433874;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:33:15,18 1|0:24:11,13 ./.:20:12,8 +chr20 454614 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=434193;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:20:9,11 1|0:37:20,17 ./.:35:22,13 +chr20 454650 . C CATTATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=434230;QSTRAND=+;GCPCT=14;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.689392 GT:DP:AD 1|0:29:12,17 1|0:21:7,14 ./.:33:22,11 +chr20 454798 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=434383;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:14:5,9 1|0:20:10,10 ./.:25:20,5 +chr20 456053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=435638;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:38:19,19 1|0:25:18,7 ./.:15:10,5 +chr20 456337 . TTTCATCCA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=435923;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.765247 GT:DP:AD 1|0:45:23,22 1|0:29:10,19 ./.:28:23,5 +chr20 456571 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=411018;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:28:18,10 ./.:14:7,7 ./.:37:20,17 +chr20 456603 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=436180;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:12,20 ./.:20:14,6 ./.:29:6,23 +chr20 456818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436395;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:12:5,7 1|0:42:17,25 ./.:24:18,6 +chr20 456933 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=436511;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:39:21,18 ./.:44:20,24 ./.:25:11,14 +chr20 456933 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=417137;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD ./.:41:24,17 0|1:40:17,23 1|1:34:16,18 +chr20 456933 . ATTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=411379;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.360964 GT:DP:AD 0|1:35:22,13 ./.:11:5,6 ./.:31:15,16 +chr20 458314 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=25237142;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:41:18,23 ./.:35:25,10 0|1:25:15,10 +chr20 458331 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=412772;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:38:20,18 0|1:28:5,23 1|1:26:16,10 +chr20 458461 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=412902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:22,24 0|1:24:13,11 1|1:35:16,19 +chr20 459799 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=414240;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:33:11,22 0|1:45:21,24 1|1:32:19,13 +chr20 460434 . CAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=414876;QSTRAND=+;GCPCT=25;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD 0|1:43:23,20 0|1:32:16,16 1|1:25:10,15 +chr20 460464 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=414902;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:33:11,22 0|1:23:11,12 1|1:24:12,12 +chr20 461679 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=416117;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:28:18,10 0|1:31:18,13 1|1:22:9,13 +chr20 462293 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=416731;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:42:18,24 0|1:28:7,21 1|1:44:24,20 +chr20 463154 . A G 60 . QNAME=cluster19_000000F;QSTART=423351;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:16,5 0|1:36:13,23 1|1:47:25,22 +chr20 463252 . C G 60 . QNAME=cluster19_000000F;QSTART=423449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:18,23 0|1:35:13,22 1|1:36:13,23 +chr20 463841 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=418279;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:34:11,23 ./.:37:24,13 ./.:26:12,14 +chr20 465665 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445241;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:35:18,17 1|1:41:24,17 1|1:38:23,15 +chr20 465676 . GC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=445253;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:27:17,10 1|1:27:6,21 1|1:23:6,17 +chr20 466029 . A AAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=420467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.360964 GT:DP:AD 0|1:22:14,8 ./.:15:10,5 ./.:47:23,24 +chr20 466637 . G GTA 60 . QNAME=cluster23_scaffold_2;QSTART=25228821;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0.792481 GT:DP:AD ./.:21:15,6 ./.:16:10,6 0|1:22:15,7 +chr20 466637 . G GTATA 60 . QNAME=cluster19_000000F;QSTART=426834;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.760964 GT:DP:AD ./.:28:7,21 0|1:22:14,8 1|0:19:14,5 +chr20 466637 . G GTGTATATATA 60 . QNAME=HG002-S9-H2-000001F;QSTART=421079;QSTRAND=+;GCPCT=18;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.747459 GT:DP:AD 0|1:47:23,24 ./.:28:22,6 ./.:31:23,8 +chr20 466637 . GTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=446213;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 1|0:26:18,8 1|0:29:5,24 ./.:32:19,13 +chr20 467024 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25228433;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:36:15,21 ./.:32:23,9 0|1:43:24,19 +chr20 468015 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=447588;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:28:14,14 1|1:32:19,13 1|1:26:10,16 +chr20 468269 . C A 60 . QNAME=cluster19_000000F;QSTART=428469;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:8,17 0|1:39:14,25 1|1:40:15,25 +chr20 469249 . G A 60 . QNAME=cluster19_000000F;QSTART=429449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:7,19 0|1:30:21,9 1|1:28:17,11 +chr20 469257 . A T 60 . QNAME=cluster19_000000F;QSTART=429457;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:27:8,19 0|1:37:25,12 1|1:33:19,14 +chr20 470060 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=424511;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:18:7,11 ./.:30:24,6 ./.:27:18,9 +chr20 471168 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=425619;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:22:10,12 ./.:38:23,15 ./.:17:9,8 +chr20 472424 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=451997;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:18,19 ./.:17:7,10 ./.:44:25,19 +chr20 472457 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=452030;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:22:8,14 1|1:28:8,20 1|1:22:8,14 +chr20 475460 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=429912;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:35:25,10 ./.:28:10,18 ./.:31:14,17 +chr20 475460 . CAAAAA C 60 . QNAME=cluster19_000000F;QSTART=435661;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.325011 GT:DP:AD ./.:34:25,9 0|1:32:15,17 ./.:34:15,19 +chr20 477729 . C T 60 . QNAME=cluster19_000000F;QSTART=25284173;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:17,18 1|0:24:14,10 1|1:29:15,14 +chr20 478540 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=432991;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:33:10,23 ./.:22:14,8 ./.:31:14,17 +chr20 480234 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=25230992;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:15,10 ./.:28:23,5 1|0:25:6,19 +chr20 484694 . T TTG 60 . QNAME=cluster19_000000F;QSTART=25277206;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:41:22,19 1|0:23:12,11 ./.:24:19,5 +chr20 484991 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464564;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:25:13,12 ./.:44:20,24 ./.:35:17,18 +chr20 485066 . CAAAA C 60 . QNAME=cluster23_scaffold_3;QSTART=25226160;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.360964 GT:DP:AD ./.:21:10,11 ./.:27:20,7 1|0:22:12,10 +chr20 485103 . A ATATATATATAT 60 . QNAME=cluster23_scaffold_2;QSTART=25210343;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:32:7,25 ./.:26:9,17 0|1:19:7,12 +chr20 485105 . A ATAATATATATATAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=439555;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.498396 GT:DP:AD 0|1:31:16,15 ./.:16:9,7 ./.:16:5,11 +chr20 485105 . A ATATATATATAT 60 . QNAME=cluster19_000000F;QSTART=25276784;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:32:13,19 1|0:26:11,15 ./.:23:7,16 +chr20 485105 . A T 60 . QNAME=cluster23_scaffold_2;QSTART=25210341;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:20,16 ./.:44:24,20 0|1:26:18,8 +chr20 485107 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439570;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:15:8,7 1|0:46:23,23 1|1:21:15,6 +chr20 485109 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439572;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:23:7,16 1|0:28:19,9 1|1:22:7,15 +chr20 485110 . ATAT A 60 . QNAME=cluster19_000000F;QSTART=445306;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:33:12,21 0|1:25:15,10 ./.:26:21,5 +chr20 485115 . T A 60 . QNAME=cluster19_000000F;QSTART=445307;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:16:7,9 0|1:32:13,19 ./.:13:6,7 +chr20 485117 . T A 60 . QNAME=cluster19_000000F;QSTART=445309;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:49:25,24 0|1:18:10,8 ./.:18:12,6 +chr20 485138 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=439601;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:35:14,21 ./.:40:17,23 ./.:31:21,10 +chr20 485139 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=439602;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:32:23,9 ./.:31:25,6 ./.:37:15,22 +chr20 487542 . G A 60 . QNAME=cluster19_000000F;QSTART=447734;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:38:19,19 0|1:33:14,19 ./.:13:5,8 +chr20 488040 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25223189;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:41:23,18 ./.:36:17,19 1|1:29:14,15 +chr20 490335 . C CT 60 . QNAME=cluster19_000000F;QSTART=25271553;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:38:19,19 1|0:33:12,21 ./.:29:5,24 +chr20 490909 . A C 60 . QNAME=cluster19_000000F;QSTART=25270979;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:31:18,13 1|0:17:11,6 ./.:32:25,7 +chr20 493202 . A T 60 . QNAME=cluster19_000000F;QSTART=25268686;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:43:20,23 1|0:42:24,18 1|1:36:22,14 +chr20 494543 . T C 60 . QNAME=cluster19_000000F;QSTART=25267345;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:16,17 1|0:43:21,22 ./.:37:17,20 +chr20 498335 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25212893;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:28:10,18 ./.:30:15,15 1|1:16:7,9 +chr20 498335 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=452799;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:28:6,22 ./.:30:18,12 ./.:46:22,24 +chr20 498901 . T C 60 . QNAME=cluster19_000000F;QSTART=459093;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:6,14 0|1:31:12,19 ./.:28:19,9 +chr20 499958 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25195485;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD ./.:31:17,14 ./.:19:5,14 0|1:26:15,11 +chr20 500634 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=25210593;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:25:17,8 ./.:39:20,19 1|0:41:19,22 +chr20 501285 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=480825;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:19:5,14 ./.:17:11,6 ./.:29:17,12 +chr20 504037 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=458500;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD 0|1:29:17,12 ./.:21:9,12 ./.:31:19,12 +chr20 505351 . G GT 60 . QNAME=cluster19_000000F;QSTART=25256536;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:25:18,7 1|0:29:21,8 1|0:38:19,19 +chr20 505587 . C G 60 . QNAME=cluster19_000000F;QSTART=465779;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:44:22,22 0|1:11:6,5 ./.:26:15,11 +chr20 505869 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25205356;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:37:20,17 ./.:31:25,6 1|0:37:21,16 +chr20 505869 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485410;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:19:5,14 ./.:20:5,15 ./.:22:12,10 +chr20 505905 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205320;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:32:14,18 ./.:14:8,6 1|0:38:17,21 +chr20 506070 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485609;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:8,21 ./.:33:16,17 0|1:44:25,19 +chr20 506079 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485618;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:32:9,23 0|1:29:14,15 +chr20 506080 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=485619;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:15,20 ./.:18:11,7 0|1:37:18,19 +chr20 506097 . C T 60 . QNAME=cluster19_000000F;QSTART=25255790;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:10,15 1|0:45:20,25 1|0:15:9,6 +chr20 506098 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=485637;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:16:8,8 ./.:20:10,10 0|1:33:13,20 +chr20 506127 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25205098;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:27:20,7 ./.:26:14,12 1|0:32:12,20 +chr20 507967 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=487506;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:35:14,21 1|1:29:21,8 1|1:37:13,24 +chr20 508286 . C T 60 . QNAME=cluster19_000000F;QSTART=25253601;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:33:22,11 1|0:33:20,13 1|1:35:21,14 +chr20 508793 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25186650;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:22:16,6 ./.:39:19,20 0|1:34:24,10 +chr20 511703 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=466166;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:16:8,8 ./.:27:6,21 ./.:45:22,23 +chr20 511705 . C T 60 . QNAME=cluster19_000000F;QSTART=25250182;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:46:24,22 1|0:41:25,16 1|1:15:5,10 +chr20 512561 . G T 60 . QNAME=cluster19_000000F;QSTART=25249326;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:16:7,9 1|0:30:14,16 1|1:18:7,11 +chr20 512965 . T C 60 . QNAME=cluster19_000000F;QSTART=25248922;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:18,7 1|0:35:16,19 ./.:37:18,19 +chr20 514164 . C T 60 . QNAME=cluster19_000000F;QSTART=25247723;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:45:24,21 1|0:20:8,12 1|1:24:5,19 +chr20 518713 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=473177;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:25:10,15 0|1:37:21,16 1|0:20:15,5 +chr20 518713 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=498253;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|0:22:7,15 1|0:44:24,20 0|1:27:6,21 +chr20 518933 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=25176511;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:15:7,8 ./.:28:22,6 0|1:28:18,10 +chr20 518933 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=473396;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 0|1:41:19,22 ./.:36:24,12 ./.:17:7,10 +chr20 522293 . C T 60 . QNAME=cluster19_000000F;QSTART=25239596;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:19:14,5 1|0:31:12,19 1|1:37:18,19 +chr20 523858 . C CA 60 . QNAME=cluster19_000000F;QSTART=25238030;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:37:22,15 1|0:48:24,24 0|1:31:7,24 +chr20 523869 . A C 60 . QNAME=cluster19_000000F;QSTART=484060;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:19:5,14 0|1:21:15,6 ./.:33:13,20 +chr20 524145 . C T 60 . QNAME=cluster19_000000F;QSTART=25237743;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:23,9 1|1:33:8,25 1|1:26:12,14 +chr20 524654 . T C 60 . QNAME=cluster19_000000F;QSTART=25237234;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:6,25 1|0:37:23,14 ./.:29:21,8 +chr20 524708 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=504246;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:36:14,22 1|0:28:16,12 0|1:19:8,11 +chr20 524708 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=479170;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD 0|1:26:14,12 0|1:26:19,7 ./.:42:21,21 +chr20 525133 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=504669;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:11,23 ./.:32:24,8 ./.:45:21,24 +chr20 525391 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=504927;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:12,25 ./.:21:6,15 ./.:20:13,7 +chr20 525650 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=505187;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:29:13,16 ./.:27:11,16 ./.:35:13,22 +chr20 525836 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25169607;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:45:22,23 ./.:40:24,16 0|1:33:21,12 +chr20 525836 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=505372;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:30:25,5 ./.:31:20,11 ./.:34:16,18 +chr20 526238 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=505772;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:23,6 1|0:39:15,24 1|1:36:15,21 +chr20 526685 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=506219;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:34:12,22 ./.:27:14,13 ./.:33:21,12 +chr20 526949 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=506484;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:37:21,16 ./.:49:25,24 ./.:41:24,17 +chr20 527001 . C CAG 60 . QNAME=cluster23_scaffold_2;QSTART=25168440;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.792481 GT:DP:AD ./.:25:13,12 ./.:23:14,9 0|1:26:16,10 +chr20 527001 . C CAGAG 60 . QNAME=cluster23_scaffold_3;QSTART=25184221;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:30:19,11 ./.:23:6,17 1|0:35:20,15 +chr20 527001 . C CAGAGAGAGAG 60 . QNAME=cluster19_000000F;QSTART=25234878;QSTRAND=-;GCPCT=54;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.674294 GT:DP:AD ./.:41:17,24 1|0:34:19,15 ./.:23:6,17 +chr20 527003 . G GAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=506537;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.792481 GT:DP:AD 1|0:33:21,12 ./.:39:14,25 ./.:32:22,10 +chr20 527729 . G A 60 . QNAME=cluster19_000000F;QSTART=487918;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:47:22,25 0|1:23:14,9 ./.:35:13,22 +chr20 527782 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=507317;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:12,9 ./.:29:12,17 ./.:37:20,17 +chr20 528449 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=507984;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:13,22 ./.:26:21,5 ./.:28:6,22 +chr20 528594 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=508130;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|0:18:6,12 ./.:28:23,5 ./.:29:18,11 +chr20 529190 . A AT 60 . QNAME=cluster19_000000F;QSTART=25232688;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:43:24,19 1|0:18:5,13 1|1:32:14,18 +chr20 530468 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=510003;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:33:10,23 ./.:26:13,13 ./.:35:12,23 +chr20 531253 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=510788;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:21:10,11 ./.:32:16,16 ./.:44:21,23 +chr20 532330 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=511866;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.459148 GT:DP:AD 1|0:21:10,11 ./.:17:10,7 ./.:17:6,11 +chr20 532352 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=511885;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:25:12,13 ./.:14:9,5 ./.:31:14,17 +chr20 533815 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=513348;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:42:19,23 ./.:36:15,21 ./.:26:5,21 +chr20 535034 . C CA 60 . QNAME=cluster19_000000F;QSTART=495224;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:30:7,23 0|1:20:13,7 ./.:24:18,6 +chr20 535034 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=514568;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:12:6,6 ./.:22:13,9 ./.:39:16,23 +chr20 535629 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=515160;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:16,18 ./.:48:24,24 ./.:29:12,17 +chr20 535685 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=515216;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:29:19,10 ./.:24:6,18 ./.:33:19,14 +chr20 535739 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=515271;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 1|0:15:8,7 ./.:24:18,6 ./.:26:15,11 +chr20 537243 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=516773;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:34:21,13 ./.:29:24,5 ./.:17:6,11 +chr20 537496 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=517027;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:27:8,19 ./.:24:14,10 ./.:29:13,16 +chr20 537963 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=517495;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:45:20,25 ./.:13:8,5 ./.:34:16,18 +chr20 538108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=517640;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:47:25,22 1|0:17:5,12 1|1:30:13,17 +chr20 539053 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=518585;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:22,20 ./.:21:9,12 ./.:33:8,25 +chr20 539493 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25155947;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:12,14 ./.:16:11,5 0|1:24:9,15 +chr20 541244 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=520776;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:39:16,23 ./.:16:10,6 ./.:16:7,9 +chr20 541502 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=521034;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:37:25,12 ./.:27:12,15 ./.:39:25,14 +chr20 542623 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=522155;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:47:22,25 ./.:24:18,6 ./.:22:11,11 +chr20 544402 . G GT 60 . QNAME=cluster19_000000F;QSTART=25217475;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:42:22,20 1|0:25:12,13 1|1:23:10,13 +chr20 545973 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=525505;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:20,5 ./.:40:15,25 ./.:35:19,16 +chr20 546122 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25149317;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:14:8,6 ./.:29:9,20 0|1:17:11,6 +chr20 546487 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=526020;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.792481 GT:DP:AD 1|0:34:13,21 ./.:26:21,5 ./.:19:13,6 +chr20 547548 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=527078;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:15,17 ./.:21:9,12 ./.:30:23,7 +chr20 548222 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=527752;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:29:16,13 0|1:37:25,12 ./.:19:6,13 +chr20 548575 . ATATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=528106;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.43156 GT:DP:AD 1|0:20:14,6 ./.:26:19,7 ./.:41:21,20 +chr20 548577 . A AT 60 . QNAME=cluster19_000000F;QSTART=25213299;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:26:9,17 1|0:18:11,7 0|1:16:9,7 +chr20 548577 . A ATT 60 . QNAME=cluster23_scaffold_3;QSTART=25162641;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.459148 GT:DP:AD ./.:27:16,11 ./.:24:18,6 1|0:17:8,9 +chr20 548971 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528495;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:9,18 ./.:27:8,19 ./.:29:15,14 +chr20 549092 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528616;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:46:23,23 ./.:17:12,5 ./.:31:11,20 +chr20 549227 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=528751;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:20,17 ./.:14:9,5 ./.:33:12,21 +chr20 549649 . GGAAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=529174;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.485475 GT:DP:AD 1|0:24:9,15 ./.:33:11,22 ./.:47:22,25 +chr20 549670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=529190;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:20,19 ./.:30:20,10 ./.:18:12,6 +chr20 550104 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=529624;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:42:25,17 ./.:19:13,6 ./.:35:12,23 +chr20 550577 . C T 60 . QNAME=cluster19_000000F;QSTART=25211299;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:8,23 1|0:23:8,15 1|1:35:22,13 +chr20 551334 . C A 60 . QNAME=cluster19_000000F;QSTART=25210542;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:13:6,7 1|0:42:18,24 1|1:22:7,15 +chr20 551415 . T A 60 . QNAME=cluster19_000000F;QSTART=25210461;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:14,18 1|0:32:22,10 1|1:33:25,8 +chr20 551424 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=530944;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:30:24,6 1|0:36:11,25 1|1:24:17,7 +chr20 551459 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=530979;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:29:5,24 1|0:18:9,9 1|1:23:15,8 +chr20 552161 . G A 60 . QNAME=cluster19_000000F;QSTART=25209715;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:18,10 1|0:26:16,10 1|1:35:14,21 +chr20 552253 . C T 60 . QNAME=cluster19_000000F;QSTART=25209623;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:16,23 1|0:42:18,24 1|1:32:22,10 +chr20 552281 . A G 60 . QNAME=cluster19_000000F;QSTART=25209595;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:38:19,19 1|0:24:16,8 1|1:29:11,18 +chr20 552720 . CT C 60 . QNAME=cluster19_000000F;QSTART=25209156;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:38:23,15 1|0:25:12,13 1|1:39:24,15 +chr20 553245 . C G 60 . QNAME=cluster19_000000F;QSTART=25208632;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:24,9 1|0:48:23,25 1|1:25:13,12 +chr20 553335 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=532856;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:25:15,10 ./.:23:17,6 ./.:40:25,15 +chr20 553335 . C CAAA 60 . QNAME=cluster19_000000F;QSTART=25208539;QSTRAND=-;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:27:11,16 1|0:25:14,11 1|1:26:5,21 +chr20 553335 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=507795;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:48:23,25 ./.:41:16,25 ./.:31:8,23 +chr20 553919 . C T 60 . QNAME=cluster19_000000F;QSTART=25207955;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:32:15,17 1|0:37:22,15 1|1:23:7,16 +chr20 554853 . T A 60 . QNAME=cluster19_000000F;QSTART=25207021;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:19,14 1|0:19:14,5 1|1:32:11,21 +chr20 555892 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535413;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:17,23 1|1:37:18,19 1|1:22:8,14 +chr20 556119 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=535640;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:22:6,16 0|1:17:12,5 1|1:22:15,7 +chr20 556141 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=535662;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:22:6,16 1|1:34:21,13 1|1:28:6,22 +chr20 556215 . G A 60 . QNAME=cluster19_000000F;QSTART=516405;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:16:10,6 0|1:41:21,20 1|1:20:9,11 +chr20 556356 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535877;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:22:17,5 ./.:22:15,7 ./.:32:10,22 +chr20 556431 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=510889;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:16:11,5 1|0:34:17,17 ./.:33:9,24 +chr20 556435 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=535956;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:15,19 0|1:39:20,19 1|1:43:22,21 +chr20 556632 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536153;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:39:17,22 1|1:38:13,25 1|1:20:9,11 +chr20 556794 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=536315;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:25:18,7 1|1:32:10,22 1|1:48:25,23 +chr20 556861 . C A 60 . QNAME=cluster19_000000F;QSTART=517051;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:9,11 0|1:28:19,9 1|1:44:25,19 +chr20 556869 . C CAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=536391;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD 1|1:50:25,25 1|0:27:5,22 ./.:46:25,21 +chr20 556869 . C CAAAAA 60 . QNAME=cluster23_scaffold_2;QSTART=25138562;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.325011 GT:DP:AD ./.:32:15,17 ./.:44:25,19 0|1:15:6,9 +chr20 556869 . C CAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25154341;QSTRAND=-;GCPCT=14;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.295836 GT:DP:AD ./.:35:23,12 ./.:42:25,17 1|0:36:13,23 +chr20 556881 . A AAAAAAT 60 . QNAME=cluster19_000000F;QSTART=517072;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.295836 GT:DP:AD ./.:28:9,19 0|1:33:16,17 ./.:16:11,5 +chr20 556883 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536407;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:26:6,20 1|0:29:5,24 ./.:33:17,16 +chr20 556885 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536409;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:21:14,7 1|0:11:6,5 ./.:17:8,9 +chr20 556887 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=536411;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:29:13,16 1|0:38:25,13 ./.:16:5,11 +chr20 557034 . T C 60 . QNAME=cluster19_000000F;QSTART=517230;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:14:9,5 0|1:28:13,15 1|1:41:22,19 +chr20 557559 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537083;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:14,23 1|0:23:14,9 ./.:35:18,17 +chr20 557586 . C T 60 . QNAME=cluster19_000000F;QSTART=517782;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:11:5,6 0|1:18:6,12 1|1:28:21,7 +chr20 557591 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537115;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:47:22,25 1|1:14:8,6 1|1:41:24,17 +chr20 557603 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=537127;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:20:14,6 1|0:21:14,7 ./.:24:14,10 +chr20 557995 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=537520;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:43:25,18 1|1:45:22,23 1|1:23:18,5 +chr20 558185 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=537710;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:46:22,24 1|0:21:8,13 ./.:41:25,16 +chr20 558374 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=537899;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:14:8,6 1|0:20:14,6 ./.:28:22,6 +chr20 558479 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538004;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:14,23 1|0:31:11,20 ./.:25:12,13 +chr20 558579 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538105;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.360964 GT:DP:AD 1|1:23:18,5 1|0:22:10,12 ./.:42:19,23 +chr20 558719 . G A 60 . QNAME=cluster19_000000F;QSTART=518916;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:11,10 0|1:16:9,7 1|1:39:15,24 +chr20 558928 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538449;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:42:24,18 1|0:34:24,10 ./.:33:22,11 +chr20 559006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=538527;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:29:16,13 1|1:35:15,20 1|1:35:12,23 +chr20 559112 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=538634;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD 1|1:38:25,13 1|0:21:9,12 ./.:39:25,14 +chr20 559189 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=538711;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:22,15 1|1:34:10,24 1|1:28:21,7 +chr20 559234 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=538756;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:36:23,13 1|0:38:20,18 1|0:15:10,5 +chr20 559282 . G T 60 . QNAME=cluster19_000000F;QSTART=519479;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:21,21 0|1:34:19,15 0|1:36:16,20 +chr20 559554 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=539077;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:17:10,7 1|1:35:15,20 1|1:30:9,21 +chr20 560062 . AC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=514523;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:33:18,15 ./.:15:7,8 ./.:37:22,15 +chr20 560063 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=539586;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:33:21,12 1|0:18:12,6 ./.:28:6,22 +chr20 560078 . CAA C 60 . QNAME=cluster19_000000F;QSTART=520277;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD ./.:38:25,13 0|1:35:10,25 1|1:18:7,11 +chr20 560086 . C G 60 . QNAME=cluster19_000000F;QSTART=520282;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:10,21 0|1:31:20,11 1|1:29:20,9 +chr20 560086 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539610;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:24:8,16 1|0:38:19,19 ./.:35:23,12 +chr20 560087 . A C 60 . QNAME=cluster19_000000F;QSTART=520283;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:35:17,18 0|1:29:21,8 1|1:33:25,8 +chr20 560103 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=539625;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:39:18,21 1|1:28:10,18 1|1:17:5,12 +chr20 560343 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=514801;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:25:7,18 1|0:39:25,14 ./.:20:14,6 +chr20 560618 . G T 60 . QNAME=cluster19_000000F;QSTART=520814;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:19,20 0|1:22:7,15 1|1:37:16,21 +chr20 560691 . G A 60 . QNAME=cluster19_000000F;QSTART=520887;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:28:9,19 0|1:32:23,9 1|1:28:22,6 +chr20 560945 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540467;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:28:9,19 1|0:27:16,11 ./.:15:5,10 +chr20 561211 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=540733;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:26:14,12 1|1:20:10,10 1|1:21:14,7 +chr20 562030 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=541552;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:16:11,5 1|1:38:23,15 1|1:34:22,12 +chr20 562133 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=541655;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:22:12,10 1|1:31:23,8 1|1:43:21,22 +chr20 562219 . A G 60 . QNAME=cluster19_000000F;QSTART=522415;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:14,17 0|1:33:24,9 1|1:27:11,16 +chr20 562642 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=542164;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:23:9,14 1|1:23:11,12 1|1:33:17,16 +chr20 562657 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=542179;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:29:22,7 1|1:45:20,25 1|1:36:18,18 +chr20 562994 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=542516;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:32:11,21 1|1:26:5,21 1|1:36:17,19 +chr20 563100 . C T 60 . QNAME=cluster19_000000F;QSTART=523296;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:34:23,11 0|1:25:14,11 1|1:33:16,17 +chr20 563396 . C T 60 . QNAME=cluster19_000000F;QSTART=25198477;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:17:6,11 1|0:25:14,11 ./.:29:13,16 +chr20 563773 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543295;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:32:25,7 1|0:22:10,12 ./.:32:9,23 +chr20 564270 . G A 60 . QNAME=cluster19_000000F;QSTART=25197603;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:19,5 1|1:29:12,17 1|1:28:9,19 +chr20 564271 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=543793;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:28:9,19 ./.:27:16,11 ./.:20:14,6 +chr20 564553 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=519011;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:30:16,14 1|1:21:6,15 1|1:32:15,17 +chr20 564560 . GTGTT G 60 . QNAME=cluster23_scaffold_3;QSTART=25146650;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.485475 GT:DP:AD ./.:38:13,25 ./.:30:17,13 1|0:25:14,11 +chr20 564629 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25130802;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:24:19,5 ./.:23:17,6 0|1:25:11,14 +chr20 565205 . A AT 60 . QNAME=cluster19_000000F;QSTART=25196667;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:37:14,23 1|1:33:8,25 1|1:30:25,5 +chr20 565232 . C T 60 . QNAME=cluster19_000000F;QSTART=25196640;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:27:6,21 1|1:47:22,25 1|0:39:24,15 +chr20 565534 . T A 60 . QNAME=cluster19_000000F;QSTART=25196338;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:23:18,5 1|1:23:15,8 1|1:25:5,20 +chr20 565902 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545424;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:8,21 ./.:16:5,11 ./.:21:6,15 +chr20 565980 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=545502;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:24,6 ./.:26:6,20 ./.:33:9,24 +chr20 566018 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25145195;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:21:5,16 ./.:31:21,10 1|0:44:24,20 +chr20 566096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=545618;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:31:25,6 ./.:25:18,7 ./.:34:11,23 +chr20 566178 . AAAAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=545701;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.295836 GT:DP:AD 1|1:22:9,13 ./.:27:14,13 ./.:34:22,12 +chr20 567105 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=546621;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:35:15,20 ./.:32:24,8 ./.:23:17,6 +chr20 568286 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=522738;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:21,17 ./.:18:13,5 ./.:40:22,18 +chr20 568720 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=523172;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:35:14,21 ./.:34:17,17 ./.:24:17,7 +chr20 568936 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25142277;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:19:6,13 ./.:38:16,22 1|0:40:18,22 +chr20 569261 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523713;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:13,19 ./.:36:18,18 ./.:28:17,11 +chr20 569263 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=548779;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:24:12,12 ./.:16:6,10 ./.:16:11,5 +chr20 569274 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=523726;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:21,11 ./.:40:21,19 ./.:35:16,19 +chr20 569446 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=523898;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:28:6,22 1|0:31:23,8 ./.:31:8,23 +chr20 569520 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=523972;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:36:22,14 1|1:32:21,11 1|1:36:15,21 +chr20 569616 . A C 60 . QNAME=cluster19_000000F;QSTART=25192256;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:15,10 1|1:42:24,18 1|1:28:7,21 +chr20 569956 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=524408;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:32:17,15 ./.:26:15,11 ./.:24:11,13 +chr20 570171 . A C 60 . QNAME=cluster19_000000F;QSTART=25191701;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:36:24,12 1|1:15:5,10 1|1:23:11,12 +chr20 570174 . T C 60 . QNAME=cluster19_000000F;QSTART=25191698;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:9,18 1|1:37:15,22 1|1:26:21,5 +chr20 570223 . C CT 60 . QNAME=cluster19_000000F;QSTART=25191648;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:44:24,20 1|1:24:11,13 0|1:44:20,24 +chr20 570223 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=25140988;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:24:7,17 ./.:28:16,12 1|0:36:12,24 +chr20 570243 . G A 60 . QNAME=cluster19_000000F;QSTART=25191628;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:17,11 1|1:41:22,19 1|1:37:19,18 +chr20 570390 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=524842;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:27:19,8 1|1:26:16,10 1|1:29:8,21 +chr20 570410 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=524862;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:43:18,25 ./.:38:16,22 ./.:28:7,21 +chr20 570752 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=525204;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:38:18,20 1|1:33:18,15 1|1:38:20,18 +chr20 571051 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=525504;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:21:15,6 1|1:31:9,22 1|1:34:15,19 +chr20 571277 . T C 60 . QNAME=cluster19_000000F;QSTART=25190593;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:21:13,8 1|1:19:14,5 1|1:34:23,11 +chr20 571843 . G A 60 . QNAME=cluster19_000000F;QSTART=25190027;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:36:24,12 1|0:36:22,14 ./.:12:6,6 +chr20 571992 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=551509;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:43:23,20 ./.:48:23,25 ./.:31:17,14 +chr20 573141 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=552656;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:21,22 ./.:44:25,19 ./.:29:11,18 +chr20 574599 . C CT 60 . QNAME=cluster19_000000F;QSTART=25187270;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:25:12,13 1|0:29:14,15 ./.:29:19,10 +chr20 574632 . G A 60 . QNAME=cluster19_000000F;QSTART=25187237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:12,25 1|0:30:12,18 ./.:31:7,24 +chr20 574708 . G A 60 . QNAME=cluster19_000000F;QSTART=25187161;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:24:7,17 1|1:38:16,22 ./.:43:19,24 +chr20 577333 . G A 60 . QNAME=cluster19_000000F;QSTART=537532;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:19,17 0|1:30:8,22 ./.:32:19,13 +chr20 577957 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=557473;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:34:16,18 ./.:40:17,23 0|1:26:20,6 +chr20 577957 . CAA C 60 . QNAME=cluster19_000000F;QSTART=25183912;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:23:7,16 1|1:22:15,7 ./.:34:20,14 +chr20 578654 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=533107;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD 0|1:31:14,17 ./.:32:23,9 1|1:25:8,17 +chr20 578654 . TAC T 60 . QNAME=cluster19_000000F;QSTART=25183217;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:46:24,22 1|1:30:14,16 ./.:25:13,12 +chr20 578790 . T C 60 . QNAME=cluster19_000000F;QSTART=25183083;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:15,16 1|1:32:8,24 ./.:28:22,6 +chr20 580481 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=559995;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:32:16,16 1|1:36:12,24 0|1:42:24,18 +chr20 580899 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=560413;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:17,18 1|1:25:8,17 ./.:31:20,11 +chr20 581272 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=560786;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:22:9,13 1|0:28:13,15 ./.:33:14,19 +chr20 581577 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536031;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:46:22,24 ./.:40:24,16 ./.:35:21,14 +chr20 581670 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=561184;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:20:11,9 1|1:36:18,18 ./.:18:5,13 +chr20 581801 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=561315;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:27:17,10 1|1:28:17,11 1|0:26:9,17 +chr20 581995 . GT G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536450;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 0|1:29:7,22 ./.:17:6,11 1|1:29:16,13 +chr20 581995 . GTT G 60 . QNAME=cluster19_000000F;QSTART=25179878;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:29:9,20 1|1:29:7,22 ./.:45:23,22 +chr20 581995 . GTTT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=561510;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.405639 GT:DP:AD 1|0:17:8,9 ./.:29:11,18 ./.:29:21,8 +chr20 582041 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=536494;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:20:12,8 ./.:10:5,5 0|1:46:22,24 +chr20 582389 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=536842;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:38:20,18 ./.:20:10,10 0|1:28:11,17 +chr20 583353 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=562864;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:20:7,13 1|1:26:15,11 ./.:26:21,5 +chr20 583466 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=537919;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:29:14,15 ./.:40:18,22 0|1:39:21,18 +chr20 583895 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538348;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:29:9,20 ./.:31:14,17 0|1:36:20,16 +chr20 584249 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=563760;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:17:8,9 1|1:39:22,17 0|1:30:17,13 +chr20 584433 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=538886;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:37:22,15 ./.:19:10,9 0|1:22:6,16 +chr20 584664 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539117;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:45:23,22 ./.:33:21,12 0|1:38:19,19 +chr20 584861 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=539314;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:23:5,18 ./.:30:11,19 0|1:16:9,7 +chr20 585289 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=564800;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:42:21,21 1|1:21:9,12 0|1:24:13,11 +chr20 585341 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=539794;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:42:17,25 ./.:11:6,5 0|1:33:14,19 +chr20 585726 . A ATATATGTATATGTACG 60 . QNAME=HG002-S9-H2-000001F;QSTART=540180;QSTRAND=+;GCPCT=23;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.869727 GT:DP:AD 0|1:17:11,6 ./.:35:12,23 0|1:15:9,6 +chr20 585739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=540208;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:28:16,12 ./.:34:20,14 0|1:27:12,15 +chr20 585749 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=540218;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:24:18,6 ./.:22:5,17 0|1:38:17,21 +chr20 585766 . GTA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=540236;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.792481 GT:DP:AD 0|1:34:22,12 ./.:28:13,15 0|1:30:20,10 +chr20 586045 . C CT 60 . QNAME=cluster19_000000F;QSTART=25175829;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:33:13,20 1|1:33:10,23 1|0:11:6,5 +chr20 586045 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540513;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:26:16,10 ./.:28:13,15 0|1:50:25,25 +chr20 586124 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=540590;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:30:17,13 ./.:32:18,14 0|1:20:7,13 +chr20 586280 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=565791;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:15,17 1|1:41:16,25 ./.:25:18,7 +chr20 586536 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=541002;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:31:8,23 ./.:19:8,11 0|1:38:21,17 +chr20 588052 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=542518;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:32:7,25 ./.:39:15,24 0|1:15:7,8 +chr20 588077 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=542543;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:12,20 ./.:44:19,25 0|1:40:16,24 +chr20 588283 . A AT 60 . QNAME=cluster19_000000F;QSTART=25173590;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:28:11,17 1|1:44:20,24 ./.:39:17,22 +chr20 588283 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=542750;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 0|1:33:24,9 ./.:24:15,9 0|1:25:7,18 +chr20 590301 . A AAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=569813;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 1|0:46:21,25 ./.:29:24,5 ./.:34:13,21 +chr20 590301 . A AACAC 60 . QNAME=cluster19_000000F;QSTART=25171568;QSTRAND=-;GCPCT=40;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.485475 GT:DP:AD ./.:35:12,23 1|1:11:6,5 ./.:21:5,16 +chr20 590301 . AAC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=544770;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.459148 GT:DP:AD 0|1:21:8,13 ./.:13:7,6 0|1:21:13,8 +chr20 590927 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25104488;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:28:23,5 ./.:49:25,24 0|1:31:6,25 +chr20 591644 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546111;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:37:17,20 ./.:20:11,9 ./.:33:20,13 +chr20 592228 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546693;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:10,22 ./.:34:19,15 0|1:33:10,23 +chr20 592392 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=546857;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:27:6,21 ./.:14:6,8 0|1:23:7,16 +chr20 593097 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=547562;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:30:6,24 ./.:18:11,7 0|1:13:7,6 +chr20 593103 . T TTA 60 . QNAME=cluster19_000000F;QSTART=25168764;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:20:6,14 1|0:20:12,8 ./.:34:16,18 +chr20 593121 . A ATATATATTTTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=547587;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.459148 GT:DP:AD 0|1:34:23,11 ./.:36:22,14 ./.:29:16,13 +chr20 593121 . A ATATATTTTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=25102283;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD ./.:13:6,7 ./.:47:22,25 0|1:38:16,22 +chr20 593121 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25118087;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:20:8,12 ./.:36:13,23 1|0:31:16,15 +chr20 593122 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=572636;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:31:18,13 0|1:34:22,12 ./.:40:16,24 +chr20 593123 . T A 60 . QNAME=cluster19_000000F;QSTART=25168744;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:27:7,20 1|0:36:21,15 ./.:27:10,17 +chr20 593266 . CTTTTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=572781;QSTRAND=+;GCPCT=12;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.271782 GT:DP:AD 1|0:29:24,5 1|1:27:5,22 ./.:46:25,21 +chr20 593638 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=548114;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:39:18,21 ./.:30:24,6 0|1:21:14,7 +chr20 593664 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=548140;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:9,17 ./.:29:9,20 0|1:11:6,5 +chr20 594618 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25100785;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:30:9,21 ./.:24:15,9 0|1:25:8,17 +chr20 594618 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549095;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:34:25,9 ./.:33:9,24 ./.:25:19,6 +chr20 595396 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=549872;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:25:20,5 ./.:43:24,19 ./.:27:22,5 +chr20 595643 . T TTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=575151;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.405639 GT:DP:AD 1|0:19:6,13 1|1:30:19,11 ./.:46:22,24 +chr20 596470 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25114738;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:9,22 ./.:43:25,18 1|0:36:13,23 +chr20 596536 . G GAAAACA 60 . QNAME=cluster23_scaffold_3;QSTART=25114666;QSTRAND=-;GCPCT=28;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.574417 GT:DP:AD ./.:26:8,18 ./.:10:5,5 1|0:46:24,22 +chr20 596656 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576166;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:22,8 1|1:40:15,25 ./.:38:14,24 +chr20 596715 . C T 60 . QNAME=cluster19_000000F;QSTART=556911;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:10:5,5 0|1:36:22,14 ./.:38:22,16 +chr20 597212 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=576722;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:33:24,9 1|1:24:17,7 ./.:32:8,24 +chr20 597374 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=576884;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:36:19,17 1|1:25:18,7 ./.:23:5,18 +chr20 597779 . C T 60 . QNAME=cluster19_000000F;QSTART=557975;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:47:22,25 0|1:42:22,20 ./.:29:6,23 +chr20 598186 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25113016;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:14,7 ./.:36:15,21 1|0:17:7,10 +chr20 598263 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=552737;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:28:22,6 ./.:17:6,11 0|1:24:10,14 +chr20 598702 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25112500;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:30:7,23 ./.:15:6,9 1|0:24:15,9 +chr20 599013 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=578523;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:26:14,12 1|1:30:14,16 1|1:30:19,11 +chr20 599169 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=553644;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:38:19,19 1|1:24:5,19 1|0:25:18,7 +chr20 599169 . ATT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=578680;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|0:33:8,25 ./.:26:6,20 0|1:39:24,15 +chr20 599421 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=578929;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:18:8,10 1|1:34:10,24 ./.:22:7,15 +chr20 600604 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=580112;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:23:15,8 1|1:42:18,24 1|1:34:14,20 +chr20 600839 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=580347;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:17,5 1|1:32:16,16 ./.:15:5,10 +chr20 600991 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=580499;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:44:19,25 1|1:33:14,19 ./.:18:13,5 +chr20 601642 . G A 60 . QNAME=cluster19_000000F;QSTART=25160230;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:23:13,10 1|0:37:15,22 ./.:29:5,24 +chr20 601683 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=581192;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:44:25,19 1|1:44:22,22 0|1:42:22,20 +chr20 601683 . T TAA 60 . QNAME=cluster23_scaffold_3;QSTART=25109518;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:45:25,20 ./.:40:21,19 1|0:14:9,5 +chr20 601733 . GC G 60 . QNAME=cluster23_scaffold_3;QSTART=25109468;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:24:6,18 ./.:40:25,15 1|1:20:5,15 +chr20 602460 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=581969;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:12:6,6 1|1:33:22,11 ./.:25:5,20 +chr20 602943 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25108259;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:44:21,23 ./.:30:12,18 1|1:28:15,13 +chr20 606311 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=585820;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:28:13,15 1|1:42:25,17 1|1:23:13,10 +chr20 606780 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=586289;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:25:17,8 ./.:22:9,13 1|1:24:9,15 +chr20 607272 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=561745;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:17,21 ./.:14:5,9 ./.:28:10,18 +chr20 607445 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=586954;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:18,19 ./.:31:25,6 1|1:37:19,18 +chr20 607522 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=587031;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:13,24 ./.:40:17,23 1|1:15:5,10 +chr20 607633 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=562106;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:39:14,25 ./.:29:17,12 ./.:29:22,7 +chr20 607790 . A C 60 . QNAME=cluster19_000000F;QSTART=567986;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:20:10,10 0|1:23:9,14 ./.:25:12,13 +chr20 608989 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=588498;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:14,19 ./.:33:14,19 1|1:12:5,7 +chr20 609812 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589321;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:28:9,19 ./.:26:6,20 1|1:31:10,21 +chr20 609898 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=589407;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:16:11,5 1|1:28:17,11 1|1:39:25,14 +chr20 609899 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589408;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:19:5,14 1|1:19:8,11 1|1:22:16,6 +chr20 610256 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=589765;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:20:7,13 ./.:38:15,23 1|1:28:6,22 +chr20 610966 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=590475;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:29:20,9 ./.:35:23,12 1|1:18:13,5 +chr20 611394 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=590903;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:42:23,19 ./.:25:13,12 1|1:32:15,17 +chr20 611826 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=566299;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:45:20,25 ./.:31:23,8 ./.:37:17,20 +chr20 611881 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591390;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:13:6,7 ./.:39:20,19 1|1:35:17,18 +chr20 612157 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=591666;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:24:8,16 ./.:22:6,16 1|1:32:19,13 +chr20 612432 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=591941;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:41:21,20 ./.:27:22,5 1|1:25:20,5 +chr20 612561 . AG A 60 . QNAME=cluster19_000000F;QSTART=25149310;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:33:17,16 1|0:18:13,5 ./.:27:18,9 +chr20 612664 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=592173;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:31:23,8 ./.:25:19,6 1|1:40:18,22 +chr20 612674 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=592183;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:20:12,8 ./.:21:12,9 1|1:29:19,10 +chr20 614136 . T C 60 . QNAME=cluster19_000000F;QSTART=574332;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:9,24 0|1:39:15,24 ./.:35:23,12 +chr20 614408 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568827;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:31:6,25 ./.:27:10,17 ./.:39:18,21 +chr20 614449 . ATCTC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593905;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD 1|0:30:5,25 ./.:22:8,14 1|1:43:22,21 +chr20 614473 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=593924;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:18:8,10 ./.:15:5,10 ./.:33:10,23 +chr20 614475 . A C 60 . QNAME=cluster19_000000F;QSTART=574671;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:16:11,5 0|1:45:21,24 ./.:28:15,13 +chr20 614477 . A C 60 . QNAME=cluster19_000000F;QSTART=574673;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:8,17 0|1:40:17,23 ./.:25:9,16 +chr20 614492 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593943;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:16,18 ./.:47:25,22 1|1:22:15,7 +chr20 614492 . T TAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=568912;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.792481 GT:DP:AD 0|1:18:10,8 ./.:18:5,13 ./.:29:16,13 +chr20 614494 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=593945;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:14,15 ./.:30:16,14 1|1:42:19,23 +chr20 614496 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=568917;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:22:7,15 ./.:16:7,9 ./.:30:23,7 +chr20 614517 . G GTA 60 . QNAME=cluster23_scaffold_3;QSTART=25096741;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD ./.:27:12,15 ./.:35:17,18 1|1:41:22,19 +chr20 614555 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594006;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:38:23,15 ./.:19:6,13 1|1:23:9,14 +chr20 614561 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594012;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:44:24,20 ./.:36:21,15 1|1:20:6,14 +chr20 614710 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594161;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:45:25,20 ./.:34:18,16 1|1:15:6,9 +chr20 615045 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=569466;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:39:19,20 ./.:23:5,18 ./.:25:18,7 +chr20 615409 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=594860;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:18:5,13 ./.:28:6,22 1|1:28:7,21 +chr20 615455 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=569876;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:6,25 ./.:31:13,18 ./.:33:24,9 +chr20 615471 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=594922;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:16:7,9 ./.:32:7,25 1|1:27:17,10 +chr20 615863 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570284;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:29:14,15 ./.:26:20,6 ./.:50:25,25 +chr20 616031 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=570452;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:16,16 ./.:44:20,24 ./.:35:19,16 +chr20 616321 . G GT 60 . QNAME=HG002-S9-H1-000001F;QSTART=595773;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:26:16,10 ./.:41:20,21 1|1:17:11,6 +chr20 616321 . G GTT 60 . QNAME=HG002-S9-H2-000001F;QSTART=570743;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:40:18,22 ./.:34:11,23 ./.:31:23,8 +chr20 616559 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=570982;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:28:17,11 ./.:36:11,25 ./.:34:24,10 +chr20 616743 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571166;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:28:22,6 ./.:35:14,21 ./.:30:5,25 +chr20 617022 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571445;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:24:9,15 ./.:31:21,10 ./.:23:10,13 +chr20 617094 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=596546;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:14,21 ./.:33:18,15 1|1:25:11,14 +chr20 617427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=571850;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:34:11,23 ./.:26:6,20 ./.:10:5,5 +chr20 617634 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597086;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:18,16 ./.:37:22,15 1|1:11:5,6 +chr20 617892 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=597344;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:25:13,12 ./.:22:16,6 1|1:27:8,19 +chr20 618050 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=597502;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:21,17 ./.:32:19,13 1|1:35:15,20 +chr20 618051 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=572474;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:42:20,22 ./.:20:10,10 ./.:39:18,21 +chr20 619223 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=573646;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:13,10 ./.:36:16,20 ./.:43:23,20 +chr20 620320 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599772;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:46:24,22 ./.:32:9,23 1|1:33:20,13 +chr20 620391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=599843;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:24,16 ./.:26:13,13 1|1:31:15,16 +chr20 621742 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576165;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:38:25,13 ./.:41:22,19 ./.:29:10,19 +chr20 622380 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=601832;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:41:25,16 ./.:29:8,21 1|1:38:21,17 +chr20 622562 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=576985;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:5,21 ./.:10:5,5 ./.:26:8,18 +chr20 622615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=602067;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:38:23,15 ./.:28:11,17 1|1:36:17,19 +chr20 622976 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=577399;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:25:18,7 ./.:11:5,6 0|1:23:13,10 +chr20 624131 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=578554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:17:5,12 ./.:34:24,10 ./.:35:11,24 +chr20 624618 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=579041;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:23,8 ./.:37:14,23 ./.:41:16,25 +chr20 624679 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604131;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:44:21,23 ./.:25:16,9 1|1:31:9,22 +chr20 625245 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=604697;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:39:19,20 ./.:30:16,14 1|1:44:24,20 +chr20 625293 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=604745;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:28:12,16 ./.:34:25,9 1|1:29:5,24 +chr20 626070 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580493;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:18:10,8 1|1:36:12,24 ./.:38:20,18 +chr20 626301 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605753;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:29:23,6 ./.:41:25,16 1|1:20:6,14 +chr20 626305 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=605757;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:43:22,21 ./.:25:7,18 1|1:28:5,23 +chr20 626441 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=605893;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:20,16 ./.:34:13,21 1|1:22:10,12 +chr20 626569 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=580992;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:34:23,11 ./.:37:16,21 ./.:32:23,9 +chr20 626821 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=606274;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:31:13,18 ./.:33:20,13 1|0:17:12,5 +chr20 626950 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=606403;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:19,15 ./.:44:20,24 1|0:36:13,23 +chr20 627161 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=606614;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:24:17,7 ./.:33:14,19 1|1:29:18,11 +chr20 627348 . A G 60 . QNAME=cluster19_000000F;QSTART=25134578;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:14,14 1|0:31:9,22 ./.:29:17,12 +chr20 628116 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=607569;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:25,7 ./.:19:7,12 1|0:31:6,25 +chr20 628203 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=607656;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:43:19,24 ./.:33:14,19 1|1:43:25,18 +chr20 628339 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=607792;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:24,6 ./.:40:22,18 1|1:37:22,15 +chr20 628481 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25066979;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:16,14 ./.:37:19,18 0|1:41:25,16 +chr20 628698 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=608151;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:26:12,14 ./.:31:15,16 1|0:41:17,24 +chr20 628723 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608176;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:10:5,5 ./.:35:19,16 1|0:25:17,8 +chr20 628961 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608414;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:11,15 ./.:31:18,13 1|1:17:11,6 +chr20 629302 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=608755;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:17,8 ./.:38:15,23 1|1:26:11,15 +chr20 629494 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=608947;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:25:19,6 ./.:27:19,8 ./.:32:16,16 +chr20 629610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25065850;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:19:8,11 ./.:32:25,7 0|1:31:15,16 +chr20 629678 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609131;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:36:20,16 ./.:23:5,18 1|1:42:19,23 +chr20 629911 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=609364;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:31:11,20 ./.:30:14,16 1|1:27:18,9 +chr20 629941 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=609394;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:34:13,21 ./.:27:15,12 1|1:21:15,6 +chr20 630017 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=609470;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:36:12,24 ./.:13:7,6 1|1:32:10,22 +chr20 630420 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=609873;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:37:14,23 ./.:27:21,6 +chr20 630592 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=585016;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:47:22,25 ./.:26:10,16 0|1:45:22,23 +chr20 630592 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610046;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.405639 GT:DP:AD 1|0:24:15,9 ./.:24:17,7 1|0:31:6,25 +chr20 630708 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=610158;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:21:6,15 ./.:25:14,11 1|1:20:5,15 +chr20 631945 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611395;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:40:25,15 ./.:43:19,24 ./.:28:8,20 +chr20 632007 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611457;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:17:6,11 ./.:36:25,11 ./.:23:18,5 +chr20 632024 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=611474;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:21:14,7 ./.:23:15,8 ./.:33:11,22 +chr20 632038 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611488;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:24:7,17 ./.:28:8,20 ./.:35:17,18 +chr20 632119 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=611569;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:19,18 ./.:33:25,8 ./.:31:15,16 +chr20 633319 . A G 60 . QNAME=cluster19_000000F;QSTART=25128607;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:24:12,12 1|0:26:14,12 0|1:17:9,8 +chr20 633850 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613300;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:38:13,25 ./.:32:14,18 ./.:17:10,7 +chr20 634306 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=613756;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:23:16,7 ./.:33:22,11 ./.:37:13,24 +chr20 634343 . C T 60 . QNAME=cluster19_000000F;QSTART=25127583;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:6,18 1|0:26:16,10 0|1:27:21,6 +chr20 634367 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613817;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:40:15,25 1|0:36:11,25 0|1:35:25,10 +chr20 634490 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=613940;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:46:24,22 ./.:44:19,25 ./.:23:18,5 +chr20 634534 . G A 60 . QNAME=cluster19_000000F;QSTART=25127392;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:25:12,13 1|0:31:15,16 0|1:28:15,13 +chr20 634915 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=614365;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:19:9,10 ./.:25:10,15 ./.:30:23,7 +chr20 637164 . T C 60 . QNAME=cluster19_000000F;QSTART=25124762;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:13:8,5 1|0:45:22,23 ./.:23:12,11 +chr20 637615 . T C 60 . QNAME=cluster19_000000F;QSTART=25124311;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:46:24,22 1|0:27:5,22 ./.:31:19,12 +chr20 638468 . T TA 60 . QNAME=cluster23_scaffold_3;QSTART=25072790;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:32:14,18 ./.:35:13,22 1|1:21:5,16 +chr20 638468 . TA T 60 . QNAME=cluster19_000000F;QSTART=25123458;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:27:12,15 1|0:35:19,16 ./.:28:9,19 +chr20 638748 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=618198;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:20,6 1|0:23:10,13 ./.:39:16,23 +chr20 638918 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=618368;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:31:11,20 ./.:34:15,19 ./.:16:8,8 +chr20 639104 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=618555;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:35:12,23 ./.:18:9,9 1|1:35:18,17 +chr20 639255 . T C 60 . QNAME=cluster19_000000F;QSTART=25122672;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:39:24,15 1|0:33:16,17 ./.:15:9,6 +chr20 639552 . T C 60 . QNAME=cluster19_000000F;QSTART=25122375;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:10:5,5 1|0:28:22,6 0|1:33:13,20 +chr20 639866 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25055593;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:40:25,15 ./.:22:6,16 0|1:16:5,11 +chr20 640046 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619497;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:10:5,5 ./.:33:15,18 ./.:32:22,10 +chr20 640049 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=619500;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:28:12,16 ./.:29:5,24 1|0:31:19,12 +chr20 640284 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=25055174;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:19:8,11 ./.:48:23,25 0|1:34:25,9 +chr20 641878 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621329;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:15:9,6 0|1:33:12,21 +chr20 641905 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069351;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:29:5,24 ./.:18:8,10 1|0:18:7,11 +chr20 641906 . G GGCGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCT 60 . QNAME=cluster23_scaffold_2;QSTART=25053389;QSTRAND=-;SVTYPE=INS;SVLEN=163;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:642292-642433.93,chr20:641878-642037.96,chr20:642038-642197.98,chr20:642101-642260.98,chr20:641905-642067.100,chr20:641938-642100.100,chr20:642005-642163.100,chr20:642131-642292.100,chr20:642198-642351.100;GCPCT=81;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.756033 GT:DP:AD ./.:13:6,7 ./.:34:21,13 0/1:27:16,11 +chr20 641913 . G GGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=621365;QSTRAND=+;SVTYPE=INS;SVLEN=66;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:641879-641946.100,chr20:641911-641979.100,chr20:641944-642013.100,chr20:641978-642046.100,chr20:642011-642076.100,chr20:642041-642109.100,chr20:642137-642206.100,chr20:642171-642239.100,chr20:642234-642301.100,chr20:642325-642392.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.75613 GT:DP:AD 1/0:34:18,16 ./.:32:17,15 ./.:36:16,20 +chr20 641930 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053365;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:16,17 ./.:15:6,9 0|1:27:13,14 +chr20 641944 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621462;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 1|0:30:16,14 ./.:47:25,22 ./.:32:13,19 +chr20 641970 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=25053324;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:30:14,16 ./.:26:16,10 0|1:31:12,19 +chr20 641977 . G T 60 . QNAME=cluster19_000000F;QSTART=25119950;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:34:16,18 1|0:24:7,17 ./.:28:20,8 +chr20 642012 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621528;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 1|0:20:10,10 ./.:35:18,17 ./.:33:16,17 +chr20 642037 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621551;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:41:18,23 ./.:44:19,25 ./.:35:18,17 +chr20 642067 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621582;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:25:9,16 ./.:38:22,16 ./.:27:21,6 +chr20 642068 . G GTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCC 60 . QNAME=cluster23_scaffold_2;QSTART=25053097;QSTRAND=-;SVTYPE=INS;SVLEN=129;HOMPCT=13.6;REMAP=tandem;REMAPHits=chr20:641878-642003.94,chr20:642292-642411.96,chr20:642037-642162.96,chr20:641938-642066.98,chr20:642005-642129.98,chr20:642131-642259.98,chr20:642198-642320.98,chr20:641903-642036.100,chr20:641970-642099.100;GCPCT=82;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.731111 GT:DP:AD ./.:34:24,10 ./.:30:19,11 0/1:18:11,7 +chr20 642069 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621584;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:33:20,13 ./.:15:10,5 ./.:27:19,8 +chr20 642076 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25053089;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:31:22,9 ./.:36:21,15 0|1:29:21,8 +chr20 642100 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621616;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:30:22,8 ./.:39:21,18 ./.:45:25,20 +chr20 642123 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=621639;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:46:23,23 ./.:21:6,15 0|1:42:20,22 +chr20 642130 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=621647;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:34:15,19 ./.:16:8,8 ./.:23:8,15 +chr20 642132 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25053033;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:13:6,7 ./.:30:7,23 0|1:35:13,22 +chr20 642171 . GGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621689;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|0:43:23,20 ./.:40:20,20 0|1:40:18,22 +chr20 642205 . GGT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621721;QSTRAND=+;GCPCT=66;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD 1|0:33:11,22 ./.:22:5,17 0|1:30:12,18 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=cluster19_000000F;QSTART=602404;QSTRAND=+;SVTYPE=INS;SVLEN=630;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641866-642420.87,chr20:641881-642435.87;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.773177 GT:DP:AD ./.:28:16,12 0/1:27:13,14 ./.:24:18,6 +chr20 642207 . T TGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGG 60 . QNAME=HG002-S9-H2-000001F;QSTART=596630;QSTRAND=+;SVTYPE=INS;SVLEN=501;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642013-642429.83,chr20:641881-642391.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.762331 GT:DP:AD 0/1:27:12,15 ./.:20:10,10 ./.:22:17,5 +chr20 642230 . T TG 60 . QNAME=cluster23_scaffold_3;QSTART=25069025;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:25:9,16 ./.:21:6,15 1|1:42:23,19 +chr20 642230 . T TGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTG 60 . QNAME=cluster19_000000F;QSTART=25119065;QSTRAND=-;SVTYPE=INS;SVLEN=632;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641866-642420.87;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.771876 GT:DP:AD ./.:35:18,17 1/0:33:10,23 ./.:44:25,19 +chr20 642259 . CTG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621773;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 1|0:19:6,13 ./.:30:7,23 ./.:16:7,9 +chr20 642261 . GTGGT G 60 . QNAME=cluster23_scaffold_3;QSTART=25068994;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.485475 GT:DP:AD ./.:34:17,17 ./.:27:20,7 1|0:46:25,21 +chr20 642265 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621776;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:12,25 0|1:27:9,18 ./.:36:22,14 +chr20 642271 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=621782;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:25,9 ./.:27:11,16 ./.:40:24,16 +chr20 642271 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597195;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 0|1:17:6,11 1|1:22:17,5 0|1:22:17,5 +chr20 642271 . G GGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGCCCAGCGGGGGTGGGGTTGCCTGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGTGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGATGGGGTTGCCTGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068731;QSTRAND=-;SVTYPE=INS;SVLEN=257;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641881-642138.99,chr20:642076-642331.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.76612 GT:DP:AD ./.:36:19,17 ./.:28:5,23 1/0:27:18,9 +chr20 642277 . G A 60 . QNAME=cluster19_000000F;QSTART=603104;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:6,19 0|1:46:25,21 ./.:25:18,7 +chr20 642284 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=621795;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:16:5,11 1|1:24:8,16 1|1:25:16,9 +chr20 642300 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118993;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:31:7,24 1|0:45:25,20 ./.:37:25,12 +chr20 642300 . G GCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=621812;QSTRAND=+;SVTYPE=INS;SVLEN=408;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642076-642435.88,chr20:641881-642300.99,chr20:641913-642332.100,chr20:641946-642363.100;GCPCT=80;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.763885 GT:DP:AD 1/0:44:19,25 ./.:35:12,23 ./.:42:17,25 +chr20 642300 . G GGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597225;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:27:11,16 0|1:40:18,22 1|1:15:6,9 +chr20 642330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=622249;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:14,20 ./.:33:15,18 1|0:21:13,8 +chr20 642330 . G GC 60 . QNAME=cluster19_000000F;QSTART=25118962;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:30:14,16 1|1:45:20,25 ./.:24:18,6 +chr20 642330 . G GCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGAGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052609;QSTRAND=-;SVTYPE=INS;SVLEN=226;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:641882-642108.97,chr20:642014-642238.97,chr20:642077-642300.97,chr20:642207-642420.97,chr20:642140-642362.98;GCPCT=79;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.77591 GT:DP:AD ./.:41:21,20 ./.:28:9,19 0/1:18:12,6 +chr20 642330 . G GGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597257;QSTRAND=+;SVTYPE=INS;SVLEN=66;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642076-642138.97,chr20:641913-641980.100,chr20:641946-642014.100,chr20:641980-642046.100,chr20:642043-642109.100,chr20:642139-642207.100,chr20:642173-642239.100,chr20:642206-642272.100,chr20:642236-642301.100,chr20:642297-642361.100;GCPCT=77;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.792073 GT:DP:AD 0/1:18:11,7 ./.:23:10,13 ./.:25:12,13 +chr20 642353 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=25052586;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:23:15,8 ./.:16:6,10 0|1:24:17,7 +chr20 642362 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=25052577;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:48:24,24 ./.:26:12,14 0|1:12:7,5 +chr20 642362 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622282;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:25:14,11 1|1:32:16,16 1|0:30:7,23 +chr20 642391 . G GC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622312;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|1:27:9,18 1|1:16:9,7 0|1:20:15,5 +chr20 642391 . G GGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGCCCAGCAGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGTGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGGGGGGGGGCCCAGCGGGGGTGGAGTTGCCTGTGGGGGGGGGGC 60 . QNAME=cluster23_scaffold_3;QSTART=25068286;QSTRAND=-;SVTYPE=INS;SVLEN=322;HOMPCT=13.8;REMAP=tandem;REMAPHits=chr20:642139-642435.94,chr20:641881-642209.100,chr20:641946-642273.100,chr20:641980-642301.100,chr20:642043-642364.100;GCPCT=78;GTCNT=2,0,1,0;NumNeighbors=10;NeighId=7;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.778434 GT:DP:AD ./.:21:9,12 ./.:41:25,16 1/0:14:6,8 +chr20 642420 . G GC 60 . QNAME=HG002-S9-H2-000001F;QSTART=597415;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:14:9,5 1|1:39:25,14 1|0:28:11,17 +chr20 642420 . G GGC 60 . QNAME=HG002-S9-H1-000001F;QSTART=622342;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:36:19,17 ./.:30:25,5 ./.:34:25,9 +chr20 642420 . G GGGC 60 . QNAME=cluster23_scaffold_2;QSTART=25052515;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.405639 GT:DP:AD ./.:30:22,8 ./.:36:25,11 0|1:39:16,23 +chr20 642746 . C CGGGGGTGCGGGT 60 . QNAME=cluster23_scaffold_2;QSTART=25052177;QSTRAND=-;GCPCT=84;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.599092 GT:DP:AD ./.:24:12,12 ./.:23:6,17 0|1:23:11,12 +chr20 642746 . C CGGGGTGCGGGT 60 . QNAME=cluster19_000000F;QSTART=603580;QSTRAND=+;GCPCT=83;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.625815 GT:DP:AD ./.:43:22,21 0|1:42:23,19 ./.:20:13,7 +chr20 642861 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=622784;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:50:25,25 ./.:32:14,18 ./.:33:22,11 +chr20 642893 . GTGA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=622817;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.75 GT:DP:AD 1|0:18:8,10 ./.:40:15,25 ./.:39:22,17 +chr20 643742 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25051181;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:45:22,23 ./.:40:19,21 0|1:32:8,24 +chr20 643827 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=623747;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:24,6 ./.:47:23,24 ./.:38:15,23 +chr20 644129 . T A 60 . QNAME=cluster23_scaffold_2;QSTART=25050794;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:16:7,9 ./.:22:14,8 0|1:27:14,13 +chr20 644264 . TA T 60 . QNAME=cluster23_scaffold_2;QSTART=25050659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:40:21,19 ./.:24:16,8 0|1:26:18,8 +chr20 644423 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=624343;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:33:20,13 ./.:30:25,5 ./.:37:12,25 +chr20 644731 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=25050192;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:25:13,12 ./.:27:18,9 0|1:26:20,6 +chr20 645244 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=25049678;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:22:9,13 ./.:27:7,20 0|1:30:25,5 +chr20 645246 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=625167;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:41:19,22 ./.:36:22,14 ./.:26:6,20 +chr20 645378 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=625300;QSTRAND=+;GCPCT=50;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:23:13,10 ./.:36:17,19 1|1:13:8,5 +chr20 645437 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625359;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:26:12,14 ./.:18:8,10 1|0:12:7,5 +chr20 645520 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625442;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:27:18,9 ./.:23:14,9 1|0:36:19,17 +chr20 645645 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=625567;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:15:9,6 ./.:31:20,11 ./.:33:18,15 +chr20 646133 . T TCTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626056;QSTRAND=+;GCPCT=25;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.75 GT:DP:AD 1|1:33:11,22 ./.:35:10,25 1|1:43:21,22 +chr20 646134 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626059;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:25:13,12 ./.:18:9,9 1|1:22:15,7 +chr20 646331 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=626256;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:20:8,12 ./.:33:14,19 1|0:44:24,20 +chr20 646515 . C CA 60 . QNAME=cluster19_000000F;QSTART=25114773;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:33:21,12 1|0:16:6,10 ./.:35:18,17 +chr20 646515 . C CAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=601515;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.161378 GT:DP:AD 0|1:30:16,14 ./.:34:14,20 ./.:32:10,22 +chr20 646515 . C CAAAAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=626441;QSTRAND=+;GCPCT=5;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.154772 GT:DP:AD 1|0:34:24,10 ./.:40:21,19 ./.:31:20,11 +chr20 646515 . C CAAAAAAAAAAAAAAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=25064139;QSTRAND=-;GCPCT=5;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.148736 GT:DP:AD ./.:34:14,20 ./.:44:21,23 1|1:31:12,19 +chr20 646526 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=626468;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:11,19 ./.:31:6,25 1|0:21:10,11 +chr20 646614 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=601630;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 0|1:10:5,5 ./.:17:7,10 ./.:36:23,13 +chr20 646770 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25048130;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:6,23 ./.:36:18,18 0|1:25:9,16 +chr20 648246 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628188;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:32:24,8 ./.:18:10,8 1|0:27:14,13 +chr20 648569 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=628511;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:40:22,18 ./.:26:17,9 1|0:29:19,10 +chr20 649005 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=628947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:28:12,16 ./.:31:8,23 1|0:25:17,8 +chr20 649182 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=604196;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:30:10,20 ./.:31:8,23 ./.:28:18,10 +chr20 649701 . CA C 60 . QNAME=cluster23_scaffold_3;QSTART=25060953;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:50:25,25 ./.:28:6,22 1|0:23:15,8 +chr20 649701 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629644;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD 1|0:16:11,5 ./.:49:24,25 ./.:31:19,12 +chr20 649716 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=604730;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:23,15 ./.:13:8,5 ./.:45:24,21 +chr20 649983 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=629923;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:14,25 ./.:27:19,8 1|0:37:15,22 +chr20 650241 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=25044659;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:16,12 ./.:19:9,10 0|1:30:15,15 +chr20 650254 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=605268;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:32:22,10 ./.:34:14,20 0|1:17:5,12 +chr20 650326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630266;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:17:8,9 ./.:25:10,15 1|1:29:16,13 +chr20 650473 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=630413;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:17:8,9 ./.:30:11,19 1|0:26:20,6 +chr20 650495 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25044405;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:18,23 ./.:22:9,13 0|1:48:24,24 +chr20 650525 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605539;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:24:12,12 ./.:27:16,11 ./.:38:15,23 +chr20 650651 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=605665;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:19:8,11 ./.:20:7,13 ./.:30:21,9 +chr20 650723 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=605737;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:36:17,19 ./.:26:9,17 ./.:20:11,9 +chr20 650781 . C A 60 . QNAME=cluster19_000000F;QSTART=25110507;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:12:6,6 1|0:30:7,23 ./.:22:5,17 +chr20 651264 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631204;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:12,21 ./.:27:21,6 1|1:32:15,17 +chr20 651683 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=631624;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:42:17,25 ./.:48:23,25 ./.:43:25,18 +chr20 651860 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=606874;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:13,10 ./.:38:19,19 0|1:41:18,23 +chr20 651923 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25042977;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:31:25,6 ./.:11:6,5 0|1:38:14,24 +chr20 652315 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=632254;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:28:16,12 ./.:31:13,18 1|1:39:25,14 +chr20 652505 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=632444;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:38:14,24 ./.:32:21,11 1|1:29:23,6 +chr20 652904 . GACCTCCCTCCTCCGGCA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=632844;QSTRAND=+;GCPCT=72;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.842489 GT:DP:AD 1|1:34:10,24 ./.:28:5,23 ./.:46:24,22 +chr20 653259 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633182;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|0:32:19,13 ./.:33:23,10 ./.:28:13,15 +chr20 653265 . G GT 60 . QNAME=cluster23_scaffold_2;QSTART=25041634;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:41:18,23 ./.:26:10,16 0|1:41:21,20 +chr20 653266 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=25041633;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:30:8,22 ./.:21:10,11 0|1:22:8,14 +chr20 653324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=633245;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:10,23 ./.:33:8,25 1|1:32:19,13 +chr20 653378 . C T 60 . QNAME=cluster19_000000F;QSTART=25107910;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:19:6,13 1|0:29:21,8 0|1:25:10,15 +chr20 653790 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=633711;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:37:13,24 ./.:19:12,7 1|0:22:12,10 +chr20 653820 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=633741;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:34:12,22 ./.:25:19,6 ./.:34:25,9 +chr20 653977 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=608974;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 0|1:19:14,5 ./.:13:5,8 ./.:24:17,7 +chr20 654666 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=609663;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:19:12,7 ./.:28:7,21 ./.:42:21,21 +chr20 655173 . C CAGAAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=635095;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.460964 GT:DP:AD 1|1:26:19,7 1|1:21:7,14 1|1:30:19,11 +chr20 656194 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=636124;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:38:22,16 ./.:37:19,18 ./.:22:15,7 +chr20 658219 . G A 60 . QNAME=cluster19_000000F;QSTART=25103060;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:16,13 1|0:42:23,19 1|0:43:23,20 +chr20 658277 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=613283;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:17:7,10 ./.:32:19,13 ./.:29:10,19 +chr20 659380 . T TGGAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=614387;QSTRAND=+;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.685475 GT:DP:AD 0|1:18:10,8 ./.:27:19,8 ./.:38:13,25 +chr20 659768 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=639698;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:40:21,19 ./.:45:20,25 ./.:15:10,5 +chr20 659929 . C T 60 . QNAME=cluster19_000000F;QSTART=25101350;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:19:7,12 1|0:36:17,19 1|0:26:16,10 +chr20 660098 . C A 60 . QNAME=cluster19_000000F;QSTART=620951;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:47:23,24 0|1:12:6,6 ./.:21:11,10 +chr20 660145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=640075;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:35:13,22 1|1:22:13,9 1|0:17:11,6 +chr20 660346 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=640276;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:15,20 0|1:34:10,24 ./.:20:14,6 +chr20 660450 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25050195;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:28:10,18 ./.:35:16,19 1|0:32:13,19 +chr20 660628 . C CA 60 . QNAME=cluster19_000000F;QSTART=621482;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:33:19,14 0|1:29:19,10 ./.:14:6,8 +chr20 660628 . C CAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=640559;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 1|0:44:20,24 ./.:23:7,16 ./.:21:12,9 +chr20 660640 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=640572;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:33:25,8 0|1:21:14,7 ./.:28:20,8 +chr20 660909 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=615919;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:16:7,9 ./.:33:25,8 ./.:38:16,22 +chr20 661249 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=641181;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:29:11,18 1|1:15:9,6 1|0:49:25,24 +chr20 662494 . C CG 60 . QNAME=cluster23_scaffold_2;QSTART=25032395;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:36:18,18 ./.:32:14,18 0|1:31:10,21 +chr20 663033 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=642965;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:26:20,6 0|1:29:22,7 1|1:31:6,25 +chr20 663218 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047427;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:29:20,9 ./.:29:24,5 1|0:42:24,18 +chr20 663275 . T C 60 . QNAME=cluster19_000000F;QSTART=624129;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:6,22 0|1:43:18,25 0|1:36:16,20 +chr20 663449 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25047196;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:17,22 ./.:20:8,12 1|0:47:24,23 +chr20 663558 . A C 60 . QNAME=cluster19_000000F;QSTART=624412;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:21:16,5 0|1:23:6,17 ./.:11:6,5 +chr20 664220 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=25030668;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:10:5,5 ./.:42:17,25 0|1:21:10,11 +chr20 665209 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645141;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:35:21,14 1|1:26:13,13 1|1:32:8,24 +chr20 665270 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=645202;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:35:17,18 ./.:34:23,11 ./.:33:23,10 +chr20 665483 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=645415;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:12:7,5 1|1:22:12,10 0|1:26:14,12 +chr20 666690 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=646622;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:22:11,11 ./.:38:14,24 ./.:37:25,12 +chr20 667092 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647024;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:31:15,16 1|1:27:7,20 1|1:29:23,6 +chr20 667181 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=647113;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:14,15 ./.:40:21,19 ./.:45:20,25 +chr20 667787 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=647719;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:24:19,5 ./.:29:9,20 ./.:18:7,11 +chr20 668165 . A ATTG 60 . QNAME=HG002-S9-H1-000001F;QSTART=648098;QSTRAND=+;GCPCT=25;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.75 GT:DP:AD 1|0:44:25,19 ./.:22:7,15 1|1:37:13,24 +chr20 668172 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=648107;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:27:12,15 ./.:24:12,12 1|1:30:19,11 +chr20 668176 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=648111;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:13,5 ./.:46:22,24 1|1:40:17,23 +chr20 668345 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=648280;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:42:17,25 ./.:25:5,20 1|1:27:22,5 +chr20 669291 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=649226;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:21:10,11 ./.:18:11,7 1|1:19:14,5 +chr20 670996 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=650931;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:20,17 ./.:37:22,15 1|1:30:19,11 +chr20 671453 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=651388;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:18,15 ./.:14:5,9 1|1:31:9,22 +chr20 671595 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=651530;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:22,12 ./.:36:17,19 1|1:25:9,16 +chr20 672290 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652225;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:19,16 ./.:50:25,25 1|1:32:25,7 +chr20 672388 . CGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652324;QSTRAND=+;GCPCT=66;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD 1|0:37:15,22 ./.:39:21,18 1|1:42:18,24 +chr20 672422 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652355;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:48:24,24 ./.:19:10,9 1|1:34:10,24 +chr20 672619 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=652552;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:19,12 ./.:27:7,20 1|1:38:18,20 +chr20 673008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=652941;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:40:21,19 ./.:32:22,10 1|1:20:14,6 +chr20 673547 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=653480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:24:9,15 ./.:37:20,17 1|1:42:22,20 +chr20 674399 . TCACA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654333;QSTRAND=+;GCPCT=40;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.760964 GT:DP:AD 1|0:28:16,12 ./.:22:11,11 0|1:30:10,20 +chr20 674399 . TCACACA T 60 . QNAME=cluster23_scaffold_3;QSTART=25036245;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.724408 GT:DP:AD ./.:29:12,17 ./.:36:13,23 1|0:30:25,5 +chr20 674405 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654334;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:26:12,14 ./.:40:18,22 0|1:28:14,14 +chr20 674407 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654336;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:9,9 ./.:34:18,16 1|1:26:10,16 +chr20 674409 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654338;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:14,7 ./.:42:18,24 1|1:39:18,21 +chr20 674411 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654340;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:48:24,24 ./.:25:19,6 1|1:34:17,17 +chr20 674413 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=654342;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:12,10 ./.:24:17,7 1|0:38:14,24 +chr20 674688 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=629699;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 0|1:37:20,17 1|1:37:23,14 ./.:36:11,25 +chr20 674713 . GTGTGTGTGTGTGTGTGTGTA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=654643;QSTRAND=+;GCPCT=47;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.614288 GT:DP:AD 1|0:33:14,19 ./.:36:15,21 1|1:36:14,22 +chr20 675537 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25019374;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:29:16,13 ./.:20:6,14 0|1:21:7,14 +chr20 675763 . T TGGC 60 . QNAME=cluster19_000000F;QSTART=25085511;QSTRAND=-;GCPCT=75;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.75 GT:DP:AD ./.:16:11,5 1|1:40:21,19 ./.:23:15,8 +chr20 676166 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=656075;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:19:10,9 ./.:39:17,22 1|1:31:23,8 +chr20 676254 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25034416;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:5,15 ./.:35:21,14 1|1:19:11,8 +chr20 677116 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25033554;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:16:10,6 ./.:34:12,22 1|1:34:13,21 +chr20 677219 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=632231;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:40:20,20 ./.:20:11,9 1|1:27:20,7 +chr20 677414 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=657324;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|0:34:16,18 0|1:21:16,5 1|1:26:19,7 +chr20 677414 . TAA T 60 . QNAME=HG002-S9-H2-000001F;QSTART=632427;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 0|1:49:25,24 ./.:29:8,21 ./.:28:16,12 +chr20 677478 . G A 60 . QNAME=cluster19_000000F;QSTART=638336;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:17,16 0|1:27:6,21 ./.:16:8,8 +chr20 677582 . A AAATAATAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=632593;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.440645 GT:DP:AD 0|1:24:14,10 ./.:29:18,11 ./.:20:9,11 +chr20 677689 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032982;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:14:9,5 ./.:26:7,19 1|1:35:25,10 +chr20 677734 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25032937;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:20,23 ./.:38:14,24 1|1:28:6,22 +chr20 677799 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=25032872;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:17,20 ./.:32:19,13 1|1:43:24,19 +chr20 677892 . A AT 60 . QNAME=cluster23_scaffold_3;QSTART=25032778;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:20:7,13 ./.:27:8,19 1|1:17:12,5 +chr20 677892 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=657801;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 1|0:24:17,7 ./.:23:12,11 ./.:14:5,9 +chr20 678014 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25032656;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:11,17 ./.:45:25,20 1|1:29:14,15 +chr20 678015 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032655;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:18:9,9 ./.:28:16,12 1|1:18:10,8 +chr20 678191 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=658098;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:34:15,19 1|1:47:22,25 1|1:27:11,16 +chr20 678230 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=633249;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:23:16,7 ./.:26:16,10 1|1:30:6,24 +chr20 678305 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633324;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:32:8,24 ./.:18:8,10 ./.:18:6,12 +chr20 678433 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=25032237;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:11,20 ./.:41:23,18 1|1:39:22,17 +chr20 678642 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25032028;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:38:13,25 ./.:37:24,13 1|1:23:17,6 +chr20 678678 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031992;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:16,15 ./.:28:5,23 1|1:12:6,6 +chr20 678706 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031964;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:18,6 ./.:34:15,19 1|1:19:7,12 +chr20 678778 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25031892;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:13:6,7 ./.:16:8,8 1|1:23:9,14 +chr20 678797 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031873;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:22,8 ./.:44:20,24 1|1:31:13,18 +chr20 678839 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=633858;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:31:23,8 ./.:29:24,5 1|1:27:13,14 +chr20 679151 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25031519;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:20,21 ./.:37:20,17 1|1:48:24,24 +chr20 679482 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634501;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:11:6,5 ./.:30:5,25 1|1:31:13,18 +chr20 679483 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=634502;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:15:5,10 ./.:34:9,25 1|1:34:14,20 +chr20 680009 . A T 60 . QNAME=cluster23_scaffold_3;QSTART=25030661;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:7,22 ./.:25:5,20 1|1:24:5,19 +chr20 680029 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030641;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:8,25 ./.:33:10,23 1|1:21:5,16 +chr20 680047 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=635066;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:18:13,5 ./.:26:19,7 ./.:26:5,21 +chr20 680149 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25030521;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:34:12,22 ./.:45:21,24 1|1:28:8,20 +chr20 680216 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25014695;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:41:25,16 ./.:21:5,16 0|1:27:20,7 +chr20 680257 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25030413;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:28:16,12 ./.:34:20,14 1|1:44:20,24 +chr20 680491 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=25030178;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:38:15,23 ./.:45:24,21 1|1:24:5,19 +chr20 680625 . T A 60 . QNAME=cluster23_scaffold_3;QSTART=25030044;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:14,18 ./.:27:16,11 1|1:17:10,7 +chr20 680841 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25029828;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:37:24,13 ./.:25:11,14 1|1:44:24,20 +chr20 681789 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25028880;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:24:11,13 ./.:24:6,18 1|1:29:15,14 +chr20 681958 . G C 60 . QNAME=cluster23_scaffold_3;QSTART=25028711;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:25:16,9 ./.:26:15,11 1|1:27:15,12 +chr20 682463 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=637482;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:48:24,24 ./.:45:25,20 1|1:34:18,16 +chr20 682684 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027985;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:15:10,5 ./.:25:16,9 1|1:26:6,20 +chr20 683486 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=25027183;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:22,5 ./.:37:20,17 1|1:34:15,19 +chr20 683498 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=638517;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:38:19,19 0|1:43:18,25 1|1:16:6,10 +chr20 683582 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=25027087;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:26:12,14 ./.:15:7,8 1|1:41:21,20 +chr20 684734 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639753;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:22:7,15 ./.:24:14,10 1|1:42:22,20 +chr20 684907 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=639926;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:22:13,9 ./.:33:20,13 ./.:24:13,11 +chr20 685089 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=25025580;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:29:23,6 ./.:20:13,7 1|1:34:12,22 +chr20 685645 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=25025024;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:32:8,24 ./.:26:18,8 1|1:22:13,9 +chr20 685696 . AAATAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=665604;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,2,1;ADCNT=0,2,0,1;LCR=0.43156 GT:DP:AD 1|0:10:5,5 1|0:13:8,5 ./.:26:6,20 +chr20 685696 . AAATAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=25024973;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.440645 GT:DP:AD ./.:21:16,5 ./.:28:8,20 1|1:41:25,16 +chr20 685696 . AAATAATAATAAT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=640716;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.445246 GT:DP:AD 0|1:36:19,17 0|1:25:17,8 ./.:15:6,9 +chr20 686394 . C T 60 . QNAME=cluster19_000000F;QSTART=25074886;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:9,20 1|0:36:22,14 ./.:35:19,16 +chr20 686439 . C CAAAAAAAAAAAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=641447;QSTRAND=+;GCPCT=6;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.17668 GT:DP:AD 0|1:25:10,15 ./.:31:18,13 ./.:37:18,19 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_3;QSTART=25024197;QSTRAND=-;SVTYPE=INS;SVLEN=26;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.114269 GT:DP:AD ./.:33:22,11 ./.:29:7,22 1/0:41:25,16 +chr20 686455 . A AAAAAAAAAAAAAAAAAAAAAAAAAT 60 . QNAME=cluster23_scaffold_2;QSTART=25008439;QSTRAND=-;SVTYPE=INS;SVLEN=25;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.117597 GT:DP:AD ./.:31:13,18 ./.:34:16,18 0/1:16:5,11 +chr20 686794 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=641815;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:34:23,11 0|1:29:22,7 1|1:34:11,23 +chr20 687380 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=642401;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:16:11,5 ./.:23:6,17 ./.:43:19,24 +chr20 687915 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=667816;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:14:7,7 1|1:41:20,21 ./.:27:13,14 +chr20 688002 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=667903;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:39:20,19 1|1:21:15,6 ./.:37:15,22 +chr20 688657 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=25006237;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:16:11,5 ./.:22:7,15 0|1:37:16,21 +chr20 688666 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=25006228;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:12,21 ./.:33:24,9 0|1:42:19,23 +chr20 689007 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=668908;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:23:13,10 1|1:43:18,25 0|1:37:20,17 +chr20 689613 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=669514;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:17,17 1|1:45:22,23 0|1:22:7,15 +chr20 689671 . G A 60 . QNAME=cluster19_000000F;QSTART=650517;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:24:16,8 0|1:31:22,9 ./.:26:10,16 +chr20 690105 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670006;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:17,10 1|1:40:18,22 0|1:39:15,24 +chr20 690819 . A AGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=645841;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD 0|1:23:7,16 ./.:20:13,7 1|0:30:14,16 +chr20 690819 . AGTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=670721;QSTRAND=+;GCPCT=40;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.760964 GT:DP:AD 1|0:17:9,8 1|1:41:23,18 0|1:25:18,7 +chr20 690853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=670750;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:12,18 1|1:35:18,17 ./.:40:19,21 +chr20 690931 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=25003967;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:47:25,22 ./.:29:6,23 0|1:26:10,16 +chr20 690947 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=670844;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:16,18 1|1:21:7,14 ./.:21:6,15 +chr20 691419 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=25003479;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:7,24 ./.:27:7,20 0|1:42:25,17 +chr20 691923 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=671820;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:18,14 0|1:41:17,24 ./.:26:17,9 +chr20 692698 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=672596;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.459148 GT:DP:AD 1|0:26:20,6 0|1:31:22,9 ./.:30:16,14 +chr20 692996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=672895;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:23:15,8 1|1:23:8,15 0|1:33:24,9 +chr20 693104 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=673003;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:19:12,7 1|1:28:22,6 0|1:26:6,20 +chr20 693463 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=673362;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:18:11,7 1|1:41:22,19 0|1:30:21,9 +chr20 694203 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=649226;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:41:16,25 ./.:34:25,9 ./.:31:19,12 +chr20 694318 . A G 60 . QNAME=cluster19_000000F;QSTART=25066966;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:11:5,6 1|0:48:25,23 0|1:19:7,12 +chr20 694678 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=674577;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:20,17 0|1:43:19,24 ./.:41:19,22 +chr20 695001 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=674900;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:21,20 1|1:35:20,15 0|1:21:15,6 +chr20 695004 . G C 60 . QNAME=cluster19_000000F;QSTART=25066280;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:26:14,12 1|0:33:10,23 0|1:35:19,16 +chr20 695155 . G GTA 60 . QNAME=cluster19_000000F;QSTART=656000;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:37:23,14 0|1:43:24,19 ./.:47:24,23 +chr20 695259 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675158;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:12,6 1|1:37:17,20 0|1:35:10,25 +chr20 695798 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=675697;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:13:5,8 0|1:24:19,5 ./.:42:23,19 +chr20 695931 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=675830;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:23:16,7 1|1:27:14,13 0|1:35:11,24 +chr20 696160 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=676059;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:10,25 0|1:29:13,16 ./.:16:6,10 +chr20 697221 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=677120;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:20,9 0|1:32:17,15 ./.:42:20,22 +chr20 697409 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=677308;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:45:24,21 0|1:19:12,7 ./.:18:13,5 +chr20 697409 . G T 60 . QNAME=cluster19_000000F;QSTART=25063875;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:21:6,15 1|0:25:12,13 0|1:41:19,22 +chr20 697934 . C G 60 . QNAME=cluster19_000000F;QSTART=25063350;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:26:21,5 1|0:22:13,9 0|1:26:10,16 +chr20 698083 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=677982;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:15:5,10 ./.:30:5,25 ./.:39:18,21 +chr20 698123 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=678022;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:20:9,11 1|1:27:8,19 0|1:49:25,24 +chr20 698533 . C T 60 . QNAME=cluster19_000000F;QSTART=659379;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:35:21,14 0|1:22:13,9 ./.:19:14,5 +chr20 698627 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=653650;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:33:11,22 1|0:33:24,9 0|1:32:8,24 +chr20 698723 . G A 60 . QNAME=cluster19_000000F;QSTART=25062561;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:25,21 1|0:28:21,7 0|1:28:16,12 +chr20 699085 . C T 60 . QNAME=cluster19_000000F;QSTART=25062199;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:41:22,19 1|0:30:25,5 0|1:38:21,17 +chr20 699214 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=25011435;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:30:25,5 ./.:30:12,18 1|0:19:12,7 +chr20 699214 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=654238;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:27:12,15 ./.:45:21,24 ./.:35:20,15 +chr20 699214 . CAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=679114;QSTRAND=+;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD 1|0:37:13,24 ./.:28:7,21 ./.:38:21,17 +chr20 700520 . C T 60 . QNAME=cluster19_000000F;QSTART=25060764;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:24:10,14 1|0:31:8,23 0|1:23:6,17 +chr20 700649 . C CT 60 . QNAME=cluster19_000000F;QSTART=25060634;QSTRAND=-;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:23:15,8 1|0:29:14,15 0|1:34:10,24 +chr20 700649 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=655672;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:14:7,7 ./.:38:20,18 ./.:30:10,20 +chr20 701307 . A G 60 . QNAME=cluster19_000000F;QSTART=25059976;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:24:18,6 1|0:20:10,10 0|1:16:6,10 +chr20 701558 . C T 60 . QNAME=cluster19_000000F;QSTART=25059725;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:48:23,25 1|0:26:18,8 0|1:17:12,5 +chr20 702627 . G A 60 . QNAME=cluster19_000000F;QSTART=25058656;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:45:23,22 1|0:42:22,20 0|1:46:23,23 +chr20 702901 . T C 60 . QNAME=cluster19_000000F;QSTART=25058382;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:17:8,9 1|0:28:9,19 0|1:19:6,13 +chr20 702972 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=682868;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:33:10,23 0|1:30:7,23 ./.:20:12,8 +chr20 704472 . A G 60 . QNAME=cluster19_000000F;QSTART=25056811;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:39:17,22 1|0:19:10,9 0|1:24:17,7 +chr20 704662 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=659683;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:26:18,8 ./.:35:23,12 ./.:27:10,17 +chr20 704704 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=684600;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:10,22 1|1:27:9,18 1|0:34:14,20 +chr20 705070 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=684966;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:20:12,8 1|1:33:15,18 ./.:39:22,17 +chr20 705212 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=660233;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:23:12,11 ./.:39:17,22 1|0:27:9,18 +chr20 705650 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=685546;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:40:24,16 1|0:41:21,20 ./.:49:24,25 +chr20 706757 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=661778;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:22:13,9 ./.:45:25,20 1|0:20:10,10 +chr20 707000 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24987895;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:44:24,20 ./.:33:8,25 0|1:21:8,13 +chr20 707128 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=687024;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:32:10,22 1|0:40:16,24 1|1:19:5,14 +chr20 707704 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=662725;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:33:8,25 ./.:24:12,12 1|0:26:21,5 +chr20 708199 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=688095;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:22,7 1|0:26:11,15 0|1:48:24,24 +chr20 708250 . C CTTTTGT 60 . QNAME=cluster19_000000F;QSTART=669097;QSTRAND=+;GCPCT=28;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.574417 GT:DP:AD ./.:38:18,20 0|1:40:21,19 ./.:31:21,10 +chr20 708422 . A ATT 60 . QNAME=HG002-S9-H2-000001F;QSTART=663444;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 0|1:31:14,17 ./.:17:11,6 1|0:18:11,7 +chr20 708422 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688319;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:28:16,12 1|0:27:7,20 ./.:30:6,24 +chr20 708747 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=688642;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:37:12,25 1|0:21:10,11 ./.:23:13,10 +chr20 708784 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=688679;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:37:24,13 1|0:13:5,8 ./.:22:16,6 +chr20 709051 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24985844;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:13:5,8 ./.:19:7,12 0|1:21:8,13 +chr20 709830 . G GACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCGCTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGAACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCCGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGA 60 . QNAME=HG002-S9-H1-000001F;QSTART=689726;QSTRAND=+;SVTYPE=INS;SVLEN=465;HOMPCT=19.4;REMAP=partial;GCPCT=67;GTCNT=2,0,1,0;NumNeighbors=1;NeighId=8;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.936881 GT:DP:AD 1/0:41:16,25 ./.:30:18,12 ./.:21:10,11 +chr20 709916 . T TG 60 . QNAME=cluster19_000000F;QSTART=670769;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:37:21,16 0|1:33:16,17 ./.:18:10,8 +chr20 710119 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24984870;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:45:23,22 ./.:20:10,10 0|1:21:12,9 +chr20 710584 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24984405;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:42:24,18 ./.:15:10,5 0|1:18:6,12 +chr20 710789 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691149;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:39:24,15 1|1:26:15,11 1|1:30:10,20 +chr20 710948 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=691308;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:13,16 0|1:44:25,19 1|0:15:5,10 +chr20 711068 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24983921;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:17,20 ./.:46:22,24 0|1:41:18,23 +chr20 711120 . G GGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=666051;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:26:10,16 ./.:32:11,21 ./.:26:18,8 +chr20 711120 . G GGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24983865;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.485475 GT:DP:AD ./.:41:16,25 ./.:35:19,16 0|1:33:9,24 +chr20 711177 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691537;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:21,20 1|1:38:19,19 1|1:28:19,9 +chr20 711562 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=691922;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:27:12,15 1|1:22:13,9 1|0:34:12,22 +chr20 711631 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=691991;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:27:9,18 1|1:20:11,9 1|1:28:19,9 +chr20 712402 . GT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=692763;QSTRAND=+;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0.5 GT:DP:AD 1|1:22:15,7 ./.:16:8,8 ./.:21:15,6 +chr20 712536 . C T 60 . QNAME=cluster19_000000F;QSTART=25048841;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:14,23 1|0:36:19,17 ./.:42:20,22 +chr20 712711 . C CT 60 . QNAME=cluster19_000000F;QSTART=25048665;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:40:25,15 1|0:45:20,25 ./.:32:7,25 +chr20 712711 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=693071;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:33:13,20 ./.:15:10,5 ./.:22:8,14 +chr20 712944 . T C 60 . QNAME=cluster19_000000F;QSTART=25048432;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:21,20 1|0:35:22,13 ./.:26:6,20 +chr20 712978 . G A 60 . QNAME=cluster19_000000F;QSTART=25048398;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:29:7,22 1|0:32:7,25 ./.:18:13,5 +chr20 713101 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693459;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:41:24,17 ./.:32:16,16 ./.:27:16,11 +chr20 713206 . T A 60 . QNAME=cluster19_000000F;QSTART=25048170;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:14:7,7 1|0:35:14,21 ./.:24:12,12 +chr20 713207 . T A 60 . QNAME=cluster19_000000F;QSTART=25048169;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:28:20,8 1|0:20:14,6 ./.:39:19,20 +chr20 713208 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=693566;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:21:11,10 1|0:30:21,9 ./.:31:17,14 +chr20 713417 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=693775;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:14:6,8 1|1:16:10,6 1|0:26:11,15 +chr20 713874 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24981111;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:24:15,9 ./.:33:17,16 0|1:16:9,7 +chr20 713943 . T C 60 . QNAME=cluster19_000000F;QSTART=25047433;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:23:7,16 1|0:34:19,15 ./.:25:7,18 +chr20 713965 . G A 60 . QNAME=cluster19_000000F;QSTART=25047411;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:19:5,14 1|0:27:16,11 ./.:35:13,22 +chr20 714250 . T C 60 . QNAME=cluster19_000000F;QSTART=25047126;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:25,11 1|0:34:11,23 ./.:29:8,21 +chr20 714816 . A G 60 . QNAME=cluster19_000000F;QSTART=675669;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:24:15,9 0|1:26:5,21 1|0:28:22,6 +chr20 715026 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695384;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:25:17,8 0|1:45:23,22 1|0:39:20,19 +chr20 715559 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=695917;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:33:10,23 1|1:42:18,24 1|0:27:14,13 +chr20 715567 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=695925;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:29:23,6 1|1:37:18,19 1|0:23:15,8 +chr20 715736 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24979249;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:21,25 ./.:27:16,11 0|1:16:11,5 +chr20 715825 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24994915;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:20,21 ./.:49:24,25 1|0:15:5,10 +chr20 715836 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=696194;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:36:20,16 1|0:25:8,17 1|0:34:24,10 +chr20 716956 . T C 60 . QNAME=cluster19_000000F;QSTART=677809;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:34:15,19 0|1:30:6,24 1|0:24:8,16 +chr20 717158 . ATT A 60 . QNAME=cluster19_000000F;QSTART=678012;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:36:18,18 0|1:30:23,7 ./.:47:24,23 +chr20 717272 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=697630;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:28:18,10 ./.:38:20,18 0|1:19:6,13 +chr20 717541 . C T 60 . QNAME=cluster19_000000F;QSTART=678392;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:19:6,13 0|1:17:9,8 ./.:32:9,23 +chr20 717932 . G C 60 . QNAME=cluster19_000000F;QSTART=25043444;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:11,23 1|0:37:16,21 ./.:22:8,14 +chr20 718343 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=698701;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:30:16,14 ./.:37:23,14 0|1:18:6,12 +chr20 718374 . C G 60 . QNAME=cluster19_000000F;QSTART=25043002;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:23:12,11 1|1:28:14,14 ./.:29:16,13 +chr20 718391 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=698749;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:29:21,8 1|1:37:25,12 0|1:44:24,20 +chr20 718820 . T A 60 . QNAME=cluster19_000000F;QSTART=679671;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:26:7,19 0|1:28:9,19 ./.:39:21,18 +chr20 719274 . C T 60 . QNAME=cluster19_000000F;QSTART=680125;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:26:15,11 0|1:22:8,14 ./.:37:13,24 +chr20 719464 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=699822;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:24:13,11 1|1:36:15,21 1|1:36:20,16 +chr20 719532 . T C 60 . QNAME=cluster19_000000F;QSTART=25041844;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:19:11,8 1|0:28:7,21 ./.:37:20,17 +chr20 720367 . C G 60 . QNAME=cluster19_000000F;QSTART=681218;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:23:11,12 0|1:18:8,10 ./.:41:23,18 +chr20 720501 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=700859;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:21,18 1|1:35:17,18 0|1:31:16,15 +chr20 720677 . C G 60 . QNAME=cluster19_000000F;QSTART=25040699;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:24:14,10 1|1:32:11,21 ./.:44:20,24 +chr20 720868 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=701226;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:16,19 0|1:29:6,23 0|1:26:19,7 +chr20 720953 . A G 60 . QNAME=cluster19_000000F;QSTART=25040423;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:24,11 1|1:27:13,14 ./.:37:15,22 +chr20 720987 . T C 60 . QNAME=cluster19_000000F;QSTART=25040389;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:34:10,24 1|1:28:11,17 ./.:41:25,16 +chr20 721070 . T C 60 . QNAME=cluster19_000000F;QSTART=25040306;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:7,21 1|0:39:22,17 ./.:44:19,25 +chr20 721315 . A T 60 . QNAME=cluster19_000000F;QSTART=25040061;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:36:11,25 1|1:16:10,6 ./.:26:16,10 +chr20 721448 . C T 60 . QNAME=cluster19_000000F;QSTART=25039928;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:33:25,8 1|1:36:17,19 ./.:21:15,6 +chr20 721653 . G A 60 . QNAME=cluster19_000000F;QSTART=25039723;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:22:13,9 1|1:28:12,16 ./.:31:19,12 +chr20 721675 . G C 60 . QNAME=cluster19_000000F;QSTART=25039701;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:8,25 1|1:23:10,13 ./.:14:7,7 +chr20 721926 . C T 60 . QNAME=cluster19_000000F;QSTART=25039450;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:21,14 1|1:30:15,15 ./.:34:10,24 +chr20 722151 . T C 60 . QNAME=cluster19_000000F;QSTART=683002;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:11,14 0|1:42:23,19 ./.:30:12,18 +chr20 722203 . T C 60 . QNAME=cluster19_000000F;QSTART=25039173;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:21:6,15 1|1:25:7,18 ./.:18:9,9 +chr20 722204 . G A 60 . QNAME=cluster19_000000F;QSTART=683055;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:22,8 0|1:22:9,13 ./.:33:8,25 +chr20 722214 . G T 60 . QNAME=cluster19_000000F;QSTART=25039162;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:22:9,13 1|1:28:7,21 ./.:22:5,17 +chr20 722255 . T C 60 . QNAME=cluster19_000000F;QSTART=25039121;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:18,23 1|1:33:14,19 ./.:27:17,10 +chr20 722277 . C T 60 . QNAME=cluster19_000000F;QSTART=25039099;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:41:20,21 1|1:36:24,12 ./.:17:9,8 +chr20 722412 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=702770;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:23:6,17 ./.:28:22,6 0|1:21:6,15 +chr20 723134 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=703492;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:22:8,14 ./.:21:16,5 0|1:33:25,8 +chr20 723311 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=703669;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:33:24,9 1|1:36:18,18 1|1:20:10,10 +chr20 723429 . CTCT C 60 . QNAME=cluster19_000000F;QSTART=684281;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:41:21,20 0|1:33:17,16 ./.:26:10,16 +chr20 723467 . C CTTTCT 60 . QNAME=cluster19_000000F;QSTART=684316;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:23:16,7 0|1:33:20,13 ./.:35:11,24 +chr20 723709 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=704067;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:32:22,10 0|1:23:6,17 0|1:17:7,10 +chr20 723727 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704085;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:27:18,9 ./.:31:10,21 0|1:19:10,9 +chr20 723799 . G A 60 . QNAME=cluster19_000000F;QSTART=25037577;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:20:12,8 1|0:41:20,21 ./.:17:12,5 +chr20 723808 . G A 60 . QNAME=cluster19_000000F;QSTART=684661;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:44:22,22 0|1:22:13,9 ./.:36:19,17 +chr20 723875 . G A 60 . QNAME=cluster19_000000F;QSTART=684728;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:26:13,13 0|1:38:20,18 ./.:42:17,25 +chr20 723915 . A G 60 . QNAME=cluster19_000000F;QSTART=25037461;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:19:13,6 1|0:35:25,10 ./.:28:20,8 +chr20 724055 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=704413;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:22:6,16 0|1:13:8,5 0|1:27:18,9 +chr20 724660 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=705019;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:40:15,25 ./.:31:17,14 0|1:19:12,7 +chr20 725763 . T G 60 . QNAME=cluster19_000000F;QSTART=686616;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:9,25 0|1:31:18,13 ./.:14:7,7 +chr20 726010 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=680942;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:12:6,6 1|0:33:12,21 ./.:29:13,16 +chr20 726010 . C CAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=686864;QSTRAND=+;GCPCT=12;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.271782 GT:DP:AD ./.:41:18,23 0|1:23:16,7 ./.:29:6,23 +chr20 726010 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=706370;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.251629 GT:DP:AD 1|0:33:15,18 ./.:36:17,19 0|1:33:8,25 +chr20 726075 . G A 60 . QNAME=cluster19_000000F;QSTART=686935;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:16,18 0|1:33:20,13 ./.:19:11,8 +chr20 726115 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=706466;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:23,8 0|1:27:16,11 0|1:44:20,24 +chr20 726166 . T C 60 . QNAME=cluster19_000000F;QSTART=687026;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:32:11,21 0|1:28:6,22 ./.:26:18,8 +chr20 726847 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707198;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:25:5,20 ./.:30:5,25 0|1:34:20,14 +chr20 727050 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=707401;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:41:19,22 ./.:18:7,11 0|1:18:11,7 +chr20 727183 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707534;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:36:11,25 ./.:48:24,24 0|1:30:14,16 +chr20 727236 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707587;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:23,13 ./.:39:19,20 0|1:34:18,16 +chr20 727293 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983447;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:22:13,9 ./.:37:15,22 1|0:35:19,16 +chr20 727295 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707646;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:7,23 ./.:37:17,20 ./.:20:15,5 +chr20 727600 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983174;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:21,11 ./.:42:25,17 1|0:33:12,21 +chr20 727602 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24983172;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:42:23,19 ./.:29:22,7 1|0:32:13,19 +chr20 727613 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=707964;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:35:21,14 1|1:33:25,8 0|1:14:7,7 +chr20 727615 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=707966;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:11,24 1|1:25:16,9 0|1:38:24,14 +chr20 727615 . C CGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=682514;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 0|1:35:11,24 ./.:38:16,22 ./.:19:7,12 +chr20 727774 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=682674;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:13:7,6 1|1:45:21,24 ./.:28:11,17 +chr20 727786 . AT A 60 . QNAME=cluster23_scaffold_3;QSTART=24982988;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:19:13,6 ./.:30:10,20 1|0:14:7,7 +chr20 727786 . ATT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=682687;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:28:6,22 1|0:37:16,21 ./.:23:15,8 +chr20 727926 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708277;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:17:12,5 1|0:35:11,24 ./.:36:15,21 +chr20 727962 . GGC G 60 . QNAME=cluster23_scaffold_3;QSTART=24982813;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:41:24,17 ./.:26:18,8 1|0:42:25,17 +chr20 728062 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708413;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:25,12 1|1:37:21,16 0|1:29:10,19 +chr20 728326 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=708677;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:10,16 0|1:24:13,11 ./.:34:25,9 +chr20 728330 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=708681;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:13,24 0|1:35:18,17 ./.:36:11,25 +chr20 728371 . G A 60 . QNAME=cluster19_000000F;QSTART=689183;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:33:16,17 0|1:13:8,5 ./.:20:7,13 +chr20 728488 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=683386;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:41:17,24 1|0:33:20,13 0|1:31:19,12 +chr20 728626 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24966366;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:21,5 ./.:31:12,19 0|1:38:17,21 +chr20 728679 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709030;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:13,24 1|0:18:8,10 1|1:45:24,21 +chr20 728689 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709040;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:34:16,18 1|0:34:19,15 0|1:20:15,5 +chr20 728722 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=709073;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:19,18 1|0:47:24,23 1|1:20:9,11 +chr20 728924 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709275;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:33:19,14 1|0:32:12,20 0|1:39:22,17 +chr20 729045 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=709396;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:18:11,7 1|0:42:23,19 1|1:39:21,18 +chr20 729328 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=709679;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:34:14,20 1|0:27:8,19 1|1:15:8,7 +chr20 729751 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=684649;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:10,22 1|0:38:21,17 0|1:44:24,20 +chr20 729893 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=684791;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:43:20,23 1|0:25:11,14 0|1:40:24,16 +chr20 730190 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=710541;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:14,13 ./.:47:23,24 1|0:50:25,25 +chr20 730755 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=711107;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:23:15,8 1|1:40:17,23 1|1:23:12,11 +chr20 731406 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=686305;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:18:6,12 1|0:33:20,13 0|1:30:18,12 +chr20 731541 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=711893;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:41:21,20 1|0:31:6,25 1|1:35:19,16 +chr20 732158 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687057;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:8,18 1|0:30:12,18 0|1:16:10,6 +chr20 732263 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=687162;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:39:21,18 1|0:27:10,17 0|1:37:15,22 +chr20 732533 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=712885;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:38:16,22 1|0:32:20,12 1|1:33:13,20 +chr20 733181 . T TTATG 60 . QNAME=HG002-S9-H1-000001F;QSTART=713534;QSTRAND=+;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.685475 GT:DP:AD 1|0:32:13,19 ./.:40:23,17 ./.:30:25,5 +chr20 733364 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=713720;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:34:25,9 1|0:28:5,23 1|1:34:16,18 +chr20 733492 . TA T 60 . QNAME=HG002-S9-H1-000001F;QSTART=713849;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|1:27:20,7 1|1:16:8,8 1|1:31:11,20 +chr20 733573 . A AAAAACAAAAC 60 . QNAME=cluster23_scaffold_3;QSTART=24977194;QSTRAND=-;GCPCT=18;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.342019 GT:DP:AD ./.:25:12,13 ./.:47:24,23 1|0:15:8,7 +chr20 733573 . AAAAAC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713929;QSTRAND=+;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.325011 GT:DP:AD 1|0:42:24,18 ./.:17:7,10 ./.:23:18,5 +chr20 733617 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=713967;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:22:5,17 ./.:22:6,16 1|0:32:7,25 +chr20 733672 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714022;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:15:5,10 ./.:26:12,14 ./.:33:24,9 +chr20 733818 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=714168;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:23:6,17 1|1:29:18,11 1|1:29:20,9 +chr20 733903 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24976864;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:44:24,20 ./.:22:13,9 1|0:27:7,20 +chr20 734373 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714723;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:21:6,15 ./.:36:23,13 ./.:35:22,13 +chr20 734383 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=714733;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|0:14:6,8 ./.:16:11,5 ./.:23:16,7 +chr20 734531 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=714881;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:21,22 1|0:28:9,19 1|1:23:14,9 +chr20 734610 . G GGT 60 . QNAME=cluster19_000000F;QSTART=695423;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:49:24,25 0|1:35:13,22 ./.:23:17,6 +chr20 734610 . G GGTGTGT 60 . QNAME=HG002-S9-H1-000001F;QSTART=714961;QSTRAND=+;GCPCT=57;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.492614 GT:DP:AD 1|0:29:17,12 1|0:36:12,24 1|1:33:15,18 +chr20 734610 . G GGTGTGTGT 60 . QNAME=HG002-S9-H2-000001F;QSTART=689509;QSTRAND=+;GCPCT=55;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.495538 GT:DP:AD 0|1:33:14,19 ./.:13:6,7 ./.:25:15,10 +chr20 734650 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24976111;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:28:23,5 ./.:29:16,13 1|0:13:8,5 +chr20 735203 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=715560;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:33:11,22 1|1:28:19,9 1|1:30:18,12 +chr20 735555 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=715912;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:32:20,12 1|0:33:19,14 1|1:30:23,7 +chr20 735589 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=690496;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:26:5,21 1|0:26:18,8 1|1:26:7,19 +chr20 736154 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24974606;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:15,8 ./.:47:24,23 1|0:31:11,20 +chr20 736400 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24974360;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:8,19 ./.:34:10,24 1|0:30:21,9 +chr20 736444 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=716801;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:30:20,10 1|0:47:23,24 1|1:35:10,25 +chr20 736736 . CA C 60 . QNAME=cluster19_000000F;QSTART=697552;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:50:25,25 0|1:36:24,12 ./.:12:7,5 +chr20 736736 . CAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=691644;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 0|1:18:13,5 1|0:20:11,9 1|1:42:22,20 +chr20 736925 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=691830;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:37:17,20 1|0:29:19,10 0|1:40:15,25 +chr20 737005 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=691910;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:34:10,24 1|0:24:13,11 0|1:32:11,21 +chr20 737174 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=717531;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:16:10,6 1|1:46:21,25 1|1:20:14,6 +chr20 737624 . A AAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=717982;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.405639 GT:DP:AD 1|0:38:15,23 ./.:20:7,13 ./.:21:8,13 +chr20 737624 . A AAATAAT 60 . QNAME=cluster19_000000F;QSTART=698439;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.43156 GT:DP:AD ./.:33:21,12 0|1:29:18,11 ./.:36:25,11 +chr20 737624 . AAATAAT A 60 . QNAME=cluster23_scaffold_3;QSTART=24973138;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.43156 GT:DP:AD ./.:36:24,12 ./.:25:13,12 1|0:47:24,23 +chr20 737898 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=718258;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:44:25,19 ./.:32:25,7 ./.:35:10,25 +chr20 738059 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=718419;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:24:11,13 1|1:30:25,5 1|1:26:6,20 +chr20 738091 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=718451;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:44:23,21 1|1:16:5,11 1|1:30:18,12 +chr20 738584 . C CA 60 . QNAME=cluster19_000000F;QSTART=699405;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:23:9,14 0|1:32:9,23 ./.:26:16,10 +chr20 738739 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=693644;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:25:17,8 1|0:32:12,20 0|1:38:22,16 +chr20 739096 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719456;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:15:6,9 1|0:38:25,13 1|1:30:6,24 +chr20 739210 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=719570;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:42:20,22 1|0:22:15,7 1|1:32:18,14 +chr20 739239 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=719599;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:40:24,16 1|0:35:10,25 1|1:35:16,19 +chr20 740272 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=695177;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:29:18,11 1|0:33:14,19 0|1:28:11,17 +chr20 740467 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=720827;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:38:17,21 1|1:29:7,22 1|1:20:9,11 +chr20 741153 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24969615;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:17:12,5 ./.:13:6,7 1|0:44:23,21 +chr20 741453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=721813;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:24:12,12 ./.:39:21,18 ./.:32:22,10 +chr20 741767 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696672;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:20:5,15 1|0:42:18,24 0|1:24:17,7 +chr20 741939 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=696844;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:6,24 1|0:15:7,8 1|1:35:23,12 +chr20 742416 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24968352;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:17,16 ./.:29:15,14 1|0:32:9,23 +chr20 742511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=722871;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:17,24 ./.:34:25,9 ./.:34:9,25 +chr20 742657 . G T 60 . QNAME=cluster23_scaffold_3;QSTART=24968111;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:14,17 ./.:30:16,14 1|0:42:22,20 +chr20 743121 . G GTCTCTCTCTC 60 . QNAME=cluster19_000000F;QSTART=703943;QSTRAND=+;GCPCT=54;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.674294 GT:DP:AD ./.:23:14,9 0|1:47:22,25 ./.:25:13,12 +chr20 743121 . GTCTC G 60 . QNAME=cluster19_000000F;QSTART=25018283;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:30:9,21 1|0:40:24,16 ./.:24:14,10 +chr20 743121 . GTCTCTCTC G 60 . QNAME=HG002-S9-H2-000001F;QSTART=698027;QSTRAND=+;GCPCT=55;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.696074 GT:DP:AD 0|1:40:16,24 ./.:29:13,16 ./.:26:20,6 +chr20 743153 . C CACACACACACACA 60 . QNAME=HG002-S9-H1-000001F;QSTART=723514;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:28:18,10 ./.:23:7,16 ./.:12:5,7 +chr20 743153 . CTCTCTCTCTCT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=723527;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:26:20,6 ./.:37:12,25 ./.:38:22,16 +chr20 743160 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698057;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:28:15,13 ./.:31:9,22 ./.:27:12,15 +chr20 743160 . T TCACACA 60 . QNAME=cluster23_scaffold_3;QSTART=24967602;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.724408 GT:DP:AD ./.:36:24,12 ./.:31:16,15 1|0:31:14,17 +chr20 743162 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698059;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:36:17,19 1|0:22:16,6 1|0:19:5,14 +chr20 743162 . T TCA 60 . QNAME=cluster23_scaffold_2;QSTART=24951823;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:27:6,21 ./.:27:14,13 0|1:35:11,24 +chr20 743164 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=698061;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:15,15 1|0:39:25,14 1|1:29:24,5 +chr20 743734 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=724096;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:36:18,18 ./.:31:11,20 ./.:29:22,7 +chr20 743803 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=724166;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:39:14,25 1|0:31:7,24 1|1:47:23,24 +chr20 743934 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24966827;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:13,21 ./.:37:15,22 1|0:28:18,10 +chr20 744816 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=725179;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:34:9,25 1|1:25:11,14 1|1:31:9,22 +chr20 745347 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=725710;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:16:9,7 1|0:37:14,23 1|1:27:21,6 +chr20 745631 . CAGA C 60 . QNAME=cluster19_000000F;QSTART=706463;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.75 GT:DP:AD ./.:12:6,6 0|1:29:12,17 ./.:31:7,24 +chr20 745642 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=726005;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:22,16 ./.:30:14,16 ./.:33:20,13 +chr20 746583 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24964178;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:17:11,6 ./.:29:7,22 1|0:21:11,10 +chr20 746687 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=701585;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:37:19,18 1|1:26:15,11 0|1:27:7,20 +chr20 746832 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=701730;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:30:12,18 1|0:29:16,13 0|1:25:14,11 +chr20 746873 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=727237;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:30:14,16 ./.:20:5,15 ./.:30:15,15 +chr20 746873 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=701772;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:30:13,17 1|1:45:20,25 1|1:34:9,25 +chr20 746937 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24963825;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:41:18,23 ./.:13:5,8 1|0:44:25,19 +chr20 747249 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702146;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:24,16 1|1:33:9,24 0|1:19:8,11 +chr20 747381 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=702278;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:27:19,8 1|1:29:16,13 0|1:38:15,23 +chr20 747855 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=702752;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:18:6,12 1|1:29:23,6 0|1:25:15,10 +chr20 748018 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24962744;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:50:25,25 ./.:31:12,19 1|0:37:25,12 +chr20 748207 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703105;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:39:17,22 1|0:27:14,13 0|1:43:24,19 +chr20 748212 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703108;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:25:18,7 1|1:31:22,9 0|1:32:15,17 +chr20 748246 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=728611;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:36:13,23 0|1:30:14,16 ./.:14:8,6 +chr20 748431 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=703327;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:34:23,11 1|0:26:17,9 0|1:26:7,19 +chr20 748452 . AT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=703349;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:41:25,16 1|0:30:23,7 1|1:32:8,24 +chr20 748776 . G A 60 . QNAME=cluster19_000000F;QSTART=709602;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:37:24,13 0|1:37:13,24 ./.:11:5,6 +chr20 749061 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24961702;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:38:23,15 ./.:17:6,11 1|0:28:20,8 +chr20 749346 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=704241;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:44:19,25 1|0:35:20,15 0|1:24:5,19 +chr20 749546 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=704441;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:26:9,17 1|0:23:6,17 0|1:30:10,20 +chr20 749854 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=730217;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:39:17,22 1|1:31:15,16 1|1:29:12,17 +chr20 750249 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=705144;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:39:21,18 1|0:30:24,6 0|1:30:19,11 +chr20 750361 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705256;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:14:5,9 1|0:29:15,14 0|1:25:13,12 +chr20 750494 . C CA 60 . QNAME=cluster19_000000F;QSTART=25010915;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:19:6,13 1|0:35:15,20 1|1:16:8,8 +chr20 750546 . T G 60 . QNAME=cluster23_scaffold_3;QSTART=24960216;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:43:23,20 ./.:37:23,14 1|0:38:19,19 +chr20 750567 . C A 60 . QNAME=cluster19_000000F;QSTART=711393;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:36:16,20 0|1:39:22,17 ./.:31:22,9 +chr20 751100 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=705995;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:29:6,23 1|0:32:11,21 0|1:27:10,17 +chr20 751283 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706178;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:25:18,7 1|0:14:5,9 0|1:36:20,16 +chr20 751473 . CTTTAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24959289;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.625815 GT:DP:AD ./.:21:12,9 ./.:36:15,21 1|0:27:5,22 +chr20 751473 . CTTTATTTTAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=731837;QSTRAND=+;GCPCT=9;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.547898 GT:DP:AD 1|0:27:7,20 0|1:15:10,5 ./.:25:12,13 +chr20 751519 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=706389;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:39:24,15 1|0:39:20,19 0|1:20:15,5 +chr20 751627 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706497;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:13,19 1|0:35:20,15 0|1:33:19,14 +chr20 751651 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=706521;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:43:18,25 1|0:30:6,24 0|1:34:13,21 +chr20 751755 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=706625;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:15,17 1|0:30:18,12 0|1:48:24,24 +chr20 752069 . ATCTT A 60 . QNAME=cluster23_scaffold_3;QSTART=24958698;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.685475 GT:DP:AD ./.:44:19,25 ./.:29:7,22 1|0:43:21,22 +chr20 752120 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706990;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:36:15,21 1|0:18:11,7 0|1:29:13,16 +chr20 752235 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=707105;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:32:9,23 1|0:30:21,9 0|1:31:20,11 +chr20 752300 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=707170;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:19:14,5 1|0:29:6,23 0|1:14:5,9 +chr20 752450 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=732803;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|1:24:11,13 1|1:16:5,11 1|1:21:10,11 +chr20 752821 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=707691;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:20:8,12 1|0:28:8,20 0|1:44:25,19 +chr20 753097 . G GAAGA 60 . QNAME=cluster23_scaffold_3;QSTART=24957670;QSTRAND=-;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.485475 GT:DP:AD ./.:34:20,14 ./.:42:24,18 1|0:38:23,15 +chr20 753097 . G GAAGAAAGAAAGAAAGAAAAGA 60 . QNAME=cluster19_000000F;QSTART=25008316;QSTRAND=-;GCPCT=27;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.422675 GT:DP:AD ./.:34:25,9 1|0:31:7,24 ./.:29:18,11 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAG 60 . QNAME=cluster23_scaffold_2;QSTART=24941877;QSTRAND=-;SVTYPE=INS;SVLEN=25;GCPCT=23;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.389675 GT:DP:AD ./.:45:25,20 ./.:22:10,12 0/1:42:24,18 +chr20 753109 . A AAAGAAAAGAAAGAAAGAAAGAAAAGAAAGAAAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=707980;QSTRAND=+;SVTYPE=INS;SVLEN=33;GCPCT=23;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.393563 GT:DP:AD 0/1:30:6,24 ./.:29:16,13 ./.:32:20,12 +chr20 753112 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733465;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:21,11 0|1:30:13,17 ./.:34:15,19 +chr20 753113 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=733466;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:25:15,10 0|1:28:13,15 ./.:19:7,12 +chr20 753141 . GAAAGAAAGAAAGAAAGAA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=733495;QSTRAND=+;GCPCT=26;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.415737 GT:DP:AD 1|0:21:10,11 ./.:43:19,24 ./.:28:13,15 +chr20 753148 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708051;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:38:19,19 1|0:22:5,17 0|1:32:9,23 +chr20 753159 . A AAAGAAAG 60 . QNAME=cluster23_scaffold_3;QSTART=24957601;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD ./.:37:21,16 ./.:29:6,23 1|0:20:13,7 +chr20 753159 . A AAG 60 . QNAME=HG002-S9-H2-000001F;QSTART=708063;QSTRAND=+;GCPCT=33;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 0|1:30:5,25 1|1:38:21,17 0|1:30:23,7 +chr20 753194 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708099;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:30:16,14 1|0:30:10,20 0|1:40:17,23 +chr20 753319 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=708224;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:22:10,12 1|0:27:19,8 0|1:32:16,16 +chr20 753350 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24957410;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:19,17 ./.:16:5,11 1|0:37:12,25 +chr20 753848 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956912;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:32:7,25 ./.:22:5,17 1|0:48:24,24 +chr20 753849 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24956911;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:27:16,11 ./.:34:20,14 1|0:37:20,17 +chr20 753973 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=708878;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:44:20,24 1|0:44:24,20 0|1:34:12,22 +chr20 754002 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=734337;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:28:16,12 ./.:26:8,18 ./.:17:12,5 +chr20 754073 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24956687;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:48:23,25 ./.:32:9,23 1|0:41:21,20 +chr20 754124 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=734459;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:26:5,21 1|0:38:25,13 1|1:34:20,14 +chr20 754553 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=709458;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:47:22,25 1|0:36:22,14 0|1:23:15,8 +chr20 755158 . G T 60 . QNAME=cluster19_000000F;QSTART=25006253;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:6,25 1|0:16:6,10 ./.:24:6,18 +chr20 755213 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=735548;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:19:12,7 1|1:25:5,20 1|1:41:24,17 +chr20 755214 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=735549;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:12:5,7 ./.:28:12,16 ./.:16:7,9 +chr20 755269 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=735605;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:35:10,25 1|1:36:19,17 1|1:46:25,21 +chr20 755467 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=735803;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:28:22,6 ./.:37:21,16 ./.:35:16,19 +chr20 755545 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24955214;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:18:8,10 ./.:37:21,16 1|0:34:25,9 +chr20 755581 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=710487;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:37:24,13 1|1:32:12,20 1|1:29:12,17 +chr20 755749 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736085;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:10,25 ./.:15:6,9 ./.:33:22,11 +chr20 755803 . A G 60 . QNAME=cluster19_000000F;QSTART=716622;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:11,20 0|1:25:14,11 ./.:30:22,8 +chr20 756000 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=736336;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:31:20,11 1|1:33:11,22 0|1:12:6,6 +chr20 756217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736553;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:20:15,5 ./.:19:11,8 ./.:46:23,23 +chr20 756388 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24954371;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:39:17,22 ./.:36:16,20 1|0:20:14,6 +chr20 756408 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=736744;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:20:15,5 ./.:24:8,16 ./.:34:12,22 +chr20 756478 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24954281;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:34:18,16 ./.:18:10,8 1|0:16:10,6 +chr20 756575 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=736912;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 1|1:21:16,5 1|1:23:14,9 0|1:35:18,17 +chr20 756637 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24954122;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:21:7,14 ./.:34:22,12 1|0:28:5,23 +chr20 756764 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24953995;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:14,14 ./.:26:11,15 1|0:28:5,23 +chr20 756872 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737208;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:47:22,25 1|1:35:17,18 1|0:31:21,10 +chr20 756909 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=737243;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:21:11,10 1|1:49:24,25 1|1:15:5,10 +chr20 758241 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=738576;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:28:10,18 1|1:20:8,12 0|1:24:19,5 +chr20 758241 . A ATTT 60 . QNAME=cluster23_scaffold_3;QSTART=24952516;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0.405639 GT:DP:AD ./.:28:19,9 ./.:24:16,8 1|0:21:12,9 +chr20 758268 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=738603;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:14,19 ./.:28:9,19 ./.:20:8,12 +chr20 758339 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=738674;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:33:17,16 ./.:16:10,6 ./.:32:21,11 +chr20 758391 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24952366;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:14:5,9 ./.:19:12,7 1|0:18:5,13 +chr20 758562 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952195;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:21,11 ./.:25:5,20 1|0:27:16,11 +chr20 758620 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=713525;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:21:11,10 1|0:39:24,15 0|1:24:12,12 +chr20 758664 . T C 60 . QNAME=cluster23_scaffold_3;QSTART=24952093;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:6,25 ./.:33:24,9 1|0:32:12,20 +chr20 758808 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=739143;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:28:14,14 1|1:30:12,18 1|1:19:9,10 +chr20 758874 . C G 60 . QNAME=cluster19_000000F;QSTART=719692;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:38:16,22 0|1:34:10,24 ./.:33:18,15 +chr20 758972 . CGTGT C 60 . QNAME=cluster23_scaffold_3;QSTART=24951785;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.760964 GT:DP:AD ./.:45:23,22 ./.:35:25,10 1|0:27:12,15 +chr20 758972 . CGTGTGTGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=713878;QSTRAND=+;GCPCT=55;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.696074 GT:DP:AD 0|1:22:9,13 1|1:33:22,11 0|1:15:7,8 +chr20 758972 . CGTGTGTGTGT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=739308;QSTRAND=+;GCPCT=54;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.674294 GT:DP:AD 1|0:22:14,8 ./.:31:10,21 ./.:17:6,11 +chr20 759048 . AC A 60 . QNAME=cluster23_scaffold_3;QSTART=24951713;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:45:23,22 ./.:29:18,11 1|0:26:21,5 +chr20 759464 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=714362;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:23:14,9 1|1:41:23,18 0|1:25:20,5 +chr20 760189 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=715087;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:32:18,14 1|0:26:19,7 0|1:18:8,10 +chr20 760275 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=740600;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:24:6,18 1|1:32:25,7 1|1:25:6,19 +chr20 761203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=741528;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:38:16,22 0|1:24:13,11 1|1:38:19,19 +chr20 761573 . C G 60 . QNAME=cluster19_000000F;QSTART=24999845;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:24,19 1|0:32:17,15 1|0:46:24,22 +chr20 761593 . G A 60 . QNAME=cluster19_000000F;QSTART=24999825;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:12:6,6 1|1:23:11,12 ./.:25:10,15 +chr20 761595 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=741920;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:38:21,17 1|1:22:12,10 1|1:21:15,6 +chr20 761987 . A G 60 . QNAME=cluster19_000000F;QSTART=24999431;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:15,16 1|0:42:18,24 1|1:36:12,24 +chr20 762072 . A C 60 . QNAME=cluster23_scaffold_3;QSTART=24948690;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:30:22,8 ./.:31:23,8 1|0:26:12,14 +chr20 762187 . G T 60 . QNAME=cluster19_000000F;QSTART=24999231;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:18:9,9 1|0:34:17,17 1|0:36:11,25 +chr20 762374 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=742699;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:22:13,9 1|1:29:13,16 1|0:41:17,24 +chr20 762480 . C G 60 . QNAME=cluster19_000000F;QSTART=24998938;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:43:21,22 1|0:17:7,10 1|0:17:5,12 +chr20 762486 . C T 60 . QNAME=cluster19_000000F;QSTART=24998932;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:47:24,23 1|0:14:8,6 1|0:33:25,8 +chr20 762576 . T C 60 . QNAME=cluster19_000000F;QSTART=24998842;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:25:16,9 1|0:25:6,19 1|0:42:23,19 +chr20 762628 . C T 60 . QNAME=cluster19_000000F;QSTART=24998790;QSTRAND=-;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:20,11 1|0:33:9,24 1|0:27:21,6 +chr20 763183 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=743508;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:19:12,7 1|1:17:10,7 1|0:16:7,9 +chr20 763406 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=743731;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:48:24,24 0|1:28:11,17 ./.:30:15,15 +chr20 763806 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744131;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:33:23,10 1|1:26:21,5 1|0:36:17,19 +chr20 764018 . A ACAGGTCAAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744344;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.960964 GT:DP:AD 1|1:22:16,6 0|1:27:5,22 ./.:35:10,25 +chr20 764203 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=744537;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:38:16,22 1|1:38:16,22 1|0:28:23,5 +chr20 764230 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=744564;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:20:5,15 1|1:36:22,14 1|0:22:14,8 +chr20 764442 . A AGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGG 60 . QNAME=cluster23_scaffold_3;QSTART=24946242;QSTRAND=-;SVTYPE=INS;SVLEN=78;HOMPCT=50;REMAP=tandem;REMAPHits=chr20:764441-764520.100;GCPCT=63;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=9;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.922364 GT:DP:AD ./.:30:19,11 ./.:35:14,21 1/0:46:22,24 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=744872;QSTRAND=+;SVTYPE=INS;SVLEN=117;HOMPCT=51.4;REMAP=tandem;REMAPHits=chr20:764431-764537.89;GCPCT=63;GTCNT=1,0,1,1;NumNeighbors=2;NeighId=9;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.930192 GT:DP:AD 1/1:23:18,5 0/1:14:6,8 ./.:45:20,25 +chr20 764537 . A AGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAAGGGGAGAATCCCCCACCTAAGGGGAGAGCCCCCACCTAT 60 . QNAME=cluster19_000000F;QSTART=24996803;QSTRAND=-;SVTYPE=INS;SVLEN=78;HOMPCT=51.4;REMAP=tandem;REMAPHits=chr20:764431-764498.84,chr20:764458-764537.100;GCPCT=63;GTCNT=2,0,1,0;NumNeighbors=2;NeighId=9;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.933711 GT:DP:AD ./.:25:14,11 1/0:43:20,23 ./.:30:22,8 +chr20 764800 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24930190;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:34:22,12 ./.:29:16,13 0|1:35:24,11 +chr20 765454 . G A 60 . QNAME=cluster19_000000F;QSTART=24995886;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:42:17,25 1|0:24:12,12 ./.:41:18,23 +chr20 765937 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=746389;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:40:25,15 0|1:13:5,8 ./.:23:11,12 +chr20 766211 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=746664;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:35:10,25 1|1:20:10,10 1|0:47:22,25 +chr20 766216 . G T 60 . QNAME=cluster19_000000F;QSTART=24995123;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:27:16,11 1|0:28:16,12 ./.:25:7,18 +chr20 766241 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=746694;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|1:33:22,11 1|1:24:12,12 1|0:34:22,12 +chr20 766308 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=746761;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:45:25,20 1|1:42:20,22 1|0:18:10,8 +chr20 766512 . C A 60 . QNAME=cluster19_000000F;QSTART=24994827;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:40:15,25 1|0:20:10,10 ./.:21:7,14 +chr20 766576 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=747029;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:22:10,12 1|1:32:11,21 1|1:32:18,14 +chr20 766899 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24928090;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:24:10,14 ./.:26:16,10 0|1:43:21,22 +chr20 767023 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747476;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:45:23,22 0|1:40:24,16 ./.:27:16,11 +chr20 767036 . A ATAG 60 . QNAME=cluster19_000000F;QSTART=24994300;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.75 GT:DP:AD ./.:27:18,9 1|0:34:19,15 ./.:30:24,6 +chr20 767191 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=747644;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:31:8,23 1|1:37:17,20 1|0:21:14,7 +chr20 767349 . C T 60 . QNAME=cluster19_000000F;QSTART=24993987;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:36:22,14 1|0:24:16,8 ./.:25:17,8 +chr20 767359 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24943323;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:21:7,14 ./.:39:25,14 1|0:14:7,7 +chr20 767376 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=747829;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:35:12,23 1|1:39:24,15 1|0:19:11,8 +chr20 767966 . T C 60 . QNAME=cluster19_000000F;QSTART=24993370;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:48:24,24 1|0:32:11,21 ./.:26:12,14 +chr20 768267 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=748720;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:21:15,6 0|1:43:22,21 ./.:27:22,5 +chr20 768330 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=748783;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:23:14,9 1|1:22:16,6 1|0:27:5,22 +chr20 769651 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24941031;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:17,17 ./.:15:6,9 1|0:25:14,11 +chr20 769672 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=750125;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:42:17,25 0|1:22:17,5 ./.:19:14,5 +chr20 769904 . A C 60 . QNAME=cluster19_000000F;QSTART=730843;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:23:15,8 0|1:35:14,21 ./.:26:16,10 +chr20 770094 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=750547;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:43:22,21 1|1:23:16,7 1|0:21:7,14 +chr20 770601 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24940081;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:34:15,19 ./.:45:20,25 1|0:36:15,21 +chr20 771027 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=751480;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:30:18,12 0|1:37:16,21 ./.:26:10,16 +chr20 771420 . CTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=751874;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD 1|1:33:20,13 ./.:32:19,13 ./.:39:22,17 +chr20 771488 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24939194;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:27:15,12 ./.:39:19,20 1|0:35:19,16 +chr20 771669 . G GA 60 . QNAME=cluster19_000000F;QSTART=732609;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:17:7,10 0|1:19:6,13 ./.:44:20,24 +chr20 771669 . G GAA 60 . QNAME=cluster23_scaffold_3;QSTART=24939011;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:42:17,25 ./.:23:16,7 1|0:34:20,14 +chr20 771669 . G GAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=752121;QSTRAND=+;GCPCT=25;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.405639 GT:DP:AD 1|1:28:11,17 ./.:23:6,17 ./.:32:23,9 +chr20 771669 . GA G 60 . QNAME=cluster19_000000F;QSTART=24989667;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:17:7,10 1|0:34:18,16 ./.:17:5,12 +chr20 771724 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=752178;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:20:8,12 1|1:22:12,10 1|0:42:20,22 +chr20 771989 . T G 60 . QNAME=cluster19_000000F;QSTART=24989348;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:23:8,15 1|1:35:12,23 1|0:22:11,11 +chr20 772587 . G GT 60 . QNAME=cluster23_scaffold_3;QSTART=24938092;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:42:22,20 ./.:28:9,19 1|0:32:20,12 +chr20 772587 . GT G 60 . QNAME=cluster19_000000F;QSTART=24988750;QSTRAND=-;GCPCT=50;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:48:23,25 1|1:26:10,16 ./.:19:5,14 +chr20 772587 . GTT G 60 . QNAME=cluster23_scaffold_2;QSTART=24922402;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:16:8,8 ./.:21:15,6 0|1:27:5,22 +chr20 772599 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753053;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:34:10,24 1|1:30:24,6 ./.:27:20,7 +chr20 772666 . G A 60 . QNAME=cluster23_scaffold_3;QSTART=24938013;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:10,15 ./.:23:7,16 1|0:27:16,11 +chr20 772719 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753173;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:21:7,14 1|1:33:25,8 1|1:23:14,9 +chr20 772824 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753278;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:40:16,24 1|1:39:15,24 1|0:24:6,18 +chr20 772843 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=753297;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:33:18,15 1|1:47:23,24 1|1:28:15,13 +chr20 772872 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=753326;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:41:25,16 0|1:34:16,18 1|0:28:13,15 +chr20 773095 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=753549;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:37:16,21 0|1:28:5,23 ./.:29:16,13 +chr20 773193 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24921798;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:11,13 ./.:23:14,9 0|1:36:16,20 +chr20 773273 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24921718;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:26:5,21 ./.:37:24,13 0|1:41:19,22 +chr20 773723 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754177;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:42:25,17 1|1:22:11,11 1|1:23:12,11 +chr20 773737 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=754191;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:25:14,11 1|1:36:15,21 1|1:18:11,7 +chr20 774159 . G A 60 . QNAME=cluster19_000000F;QSTART=735098;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:47:25,22 0|1:29:5,24 ./.:38:24,14 +chr20 774304 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=729331;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:38:13,25 ./.:46:23,23 ./.:42:19,23 +chr20 774383 . T C 60 . QNAME=cluster19_000000F;QSTART=735322;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:14,19 0|1:32:16,16 ./.:38:17,21 +chr20 774574 . A G 60 . QNAME=cluster19_000000F;QSTART=735513;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:30:10,20 0|1:33:15,18 ./.:49:25,24 +chr20 775268 . CTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=736208;QSTRAND=+;GCPCT=11;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.251629 GT:DP:AD ./.:16:7,9 0|1:30:14,16 ./.:42:21,21 +chr20 775268 . CTTTTTTTTTTT C 60 . QNAME=cluster19_000000F;QSTART=24986070;QSTRAND=-;GCPCT=8;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.206908 GT:DP:AD ./.:24:8,16 1|0:27:15,12 1|1:16:10,6 +chr20 775431 . G A 60 . QNAME=cluster19_000000F;QSTART=24985918;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:16:6,10 1|0:38:20,18 1|1:38:17,21 +chr20 775463 . T C 60 . QNAME=cluster19_000000F;QSTART=24985886;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:42:19,23 1|1:27:18,9 1|1:36:16,20 +chr20 775534 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=755988;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:37:15,22 1|1:20:11,9 1|1:38:25,13 +chr20 775539 . A G 60 . QNAME=cluster19_000000F;QSTART=24985810;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:30:20,10 1|1:27:17,10 1|1:44:24,20 +chr20 775876 . A G 60 . QNAME=cluster19_000000F;QSTART=24985473;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:25:19,6 1|1:36:24,12 1|1:27:22,5 +chr20 775888 . A G 60 . QNAME=cluster19_000000F;QSTART=736819;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:22,24 0|1:23:13,10 ./.:22:13,9 +chr20 776848 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=757302;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:40:25,15 0|1:28:16,12 ./.:32:11,21 +chr20 776855 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757309;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:19:7,12 1|1:28:6,22 1|1:38:25,13 +chr20 776856 . TG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=757311;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:28:5,23 1|0:20:11,9 1|1:26:8,18 +chr20 776863 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=731890;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:40:23,17 ./.:27:14,13 ./.:21:7,14 +chr20 776921 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=757375;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:23:12,11 0|1:42:23,19 ./.:34:13,21 +chr20 777272 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=757727;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:22:9,13 1|0:45:20,25 1|1:14:9,5 +chr20 777276 . A AC 60 . QNAME=cluster19_000000F;QSTART=738209;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:21:13,8 0|1:23:18,5 ./.:27:5,22 +chr20 777343 . A G 60 . QNAME=cluster19_000000F;QSTART=738276;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:46:25,21 0|1:38:21,17 ./.:31:11,20 +chr20 777391 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=757846;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:36:21,15 ./.:24:19,5 ./.:30:17,13 +chr20 778013 . C CT 60 . QNAME=cluster23_scaffold_2;QSTART=24916988;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:24:8,16 ./.:41:23,18 0|1:44:25,19 +chr20 778013 . CT C 60 . QNAME=cluster19_000000F;QSTART=738947;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:26:15,11 0|1:28:13,15 ./.:22:16,6 +chr20 778339 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=758794;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:38:25,13 1|1:46:21,25 1|1:32:16,16 +chr20 778729 . C CT 60 . QNAME=cluster19_000000F;QSTART=24982619;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:30:15,15 1|0:44:20,24 ./.:27:12,15 +chr20 778749 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24916252;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:18,6 ./.:30:7,23 0|1:29:17,12 +chr20 778880 . A G 60 . QNAME=cluster19_000000F;QSTART=24982468;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:36:24,12 1|1:18:5,13 1|1:31:7,24 +chr20 779208 . T C 60 . QNAME=cluster19_000000F;QSTART=24982140;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:26:5,21 1|1:29:6,23 1|1:30:10,20 +chr20 779804 . T C 60 . QNAME=cluster19_000000F;QSTART=24981544;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:29:15,14 1|0:21:15,6 ./.:20:6,14 +chr20 780086 . G A 60 . QNAME=cluster19_000000F;QSTART=741018;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:17,18 0|1:27:16,11 ./.:27:14,13 +chr20 780364 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=760819;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:30:17,13 ./.:28:21,7 ./.:39:16,23 +chr20 781143 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=761598;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:26:6,20 1|1:27:11,16 1|1:31:24,7 +chr20 781912 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=762367;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:19:6,13 1|1:19:12,7 1|1:33:22,11 +chr20 782053 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=762508;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|1:34:21,13 1|1:23:13,10 1|1:23:12,11 +chr20 782135 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762590;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:11,19 1|1:43:18,25 1|1:33:25,8 +chr20 782243 . T TG 60 . QNAME=HG002-S9-H1-000001F;QSTART=762699;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:28:6,22 ./.:30:14,16 ./.:49:24,25 +chr20 782250 . G GA 60 . QNAME=HG002-S9-H2-000001F;QSTART=737280;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:35:25,10 1|1:30:10,20 1|1:19:13,6 +chr20 782334 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=762790;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:22,21 1|1:31:9,22 1|1:18:10,8 +chr20 782552 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763008;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:41:21,20 1|1:24:16,8 1|1:19:13,6 +chr20 782748 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763204;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:17:10,7 1|1:34:13,21 1|1:32:14,18 +chr20 782898 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763354;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:28:21,7 1|1:31:12,19 1|1:33:14,19 +chr20 783008 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763464;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:36:21,15 1|1:24:18,6 1|1:43:21,22 +chr20 783188 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763644;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:35:20,15 1|1:15:5,10 1|1:21:16,5 +chr20 783194 . C T 60 . QNAME=cluster19_000000F;QSTART=24978153;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:5,25 1|0:45:21,24 1|1:30:22,8 +chr20 783195 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=763651;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:14,21 1|1:48:24,24 1|1:25:12,13 +chr20 783325 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=763781;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:27:7,20 1|1:11:6,5 1|1:40:15,25 +chr20 783424 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763880;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:29:10,19 1|1:41:25,16 1|1:23:12,11 +chr20 783447 . A G 60 . QNAME=cluster19_000000F;QSTART=24977900;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:42:19,23 1|0:19:13,6 1|1:42:17,25 +chr20 783450 . C T 60 . QNAME=cluster19_000000F;QSTART=744383;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:27:12,15 0|1:18:6,12 ./.:25:15,10 +chr20 783488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763944;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:24:15,9 ./.:28:8,20 ./.:25:14,11 +chr20 783520 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=763976;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:41:18,23 1|1:23:15,8 1|1:45:25,20 +chr20 783739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764195;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:36:22,14 1|1:28:23,5 1|1:19:12,7 +chr20 783834 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764290;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:14:7,7 1|1:46:23,23 1|1:34:23,11 +chr20 783937 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764393;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:39:23,16 1|1:41:22,19 1|1:33:15,18 +chr20 784114 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764570;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:31:11,20 1|0:21:16,5 1|1:43:25,18 +chr20 784189 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764645;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:18:9,9 1|1:35:23,12 1|1:43:25,18 +chr20 784244 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764700;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:39:15,24 1|1:28:13,15 1|1:22:6,16 +chr20 784245 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=764701;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:15:5,10 1|1:33:18,15 1|1:35:21,14 +chr20 784337 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=764793;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:22:6,16 1|1:43:19,24 1|1:21:5,16 +chr20 784347 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=764803;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:46:23,23 1|1:31:16,15 1|1:29:23,6 +chr20 784686 . G T 60 . QNAME=cluster19_000000F;QSTART=24976661;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:31:24,7 1|0:19:14,5 1|1:35:21,14 +chr20 784695 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765151;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:26:18,8 1|1:26:15,11 1|1:21:7,14 +chr20 784821 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765277;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:21:7,14 1|1:25:7,18 1|1:24:15,9 +chr20 784842 . A G 60 . QNAME=cluster19_000000F;QSTART=745775;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:35:18,17 0|1:20:13,7 ./.:14:9,5 +chr20 785145 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=765601;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:20:14,6 0|1:22:17,5 ./.:16:8,8 +chr20 785294 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=765750;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:43:23,20 1|1:35:19,16 1|1:41:24,17 +chr20 785303 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=765759;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:30:20,10 1|1:32:12,20 1|1:28:23,5 +chr20 785581 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766037;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:13:6,7 1|1:32:18,14 1|1:18:13,5 +chr20 785647 . G A 60 . QNAME=cluster19_000000F;QSTART=24975700;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:24:8,16 1|0:27:6,21 1|1:36:17,19 +chr20 785693 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=766149;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:27:19,8 1|1:46:22,24 1|1:30:11,19 +chr20 785803 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=766259;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:47:24,23 1|1:24:13,11 1|1:15:9,6 +chr20 786660 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24924029;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:20,14 ./.:35:18,17 1|0:32:23,9 +chr20 787077 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=767533;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:15,18 1|1:46:22,24 1|1:23:16,7 +chr20 787239 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767696;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:30:12,18 ./.:31:21,10 1|0:30:21,9 +chr20 787239 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24907761;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:32:18,14 ./.:24:6,18 0|1:26:9,17 +chr20 787512 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=767968;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|1:24:9,15 1|1:40:22,18 1|0:38:20,18 +chr20 787930 . A T 60 . QNAME=cluster19_000000F;QSTART=24973418;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:17,6 1|0:46:25,21 1|1:35:10,25 +chr20 788431 . T C 60 . QNAME=cluster19_000000F;QSTART=24972917;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:23:5,18 1|0:41:21,20 1|1:33:8,25 +chr20 788945 . T C 60 . QNAME=cluster19_000000F;QSTART=24972403;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:18,18 1|0:45:24,21 1|1:41:21,20 +chr20 789027 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=769481;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:19:13,6 1|0:27:17,10 1|1:34:20,14 +chr20 789716 . G A 60 . QNAME=cluster19_000000F;QSTART=750648;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:28:21,7 0|1:32:24,8 ./.:40:18,22 +chr20 789908 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770362;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:22:14,8 1|1:39:24,15 1|1:39:18,21 +chr20 789995 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=770449;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:39:20,19 ./.:18:9,9 ./.:18:11,7 +chr20 790219 . T C 60 . QNAME=cluster19_000000F;QSTART=24971129;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:21,15 1|0:40:24,16 1|1:29:14,15 +chr20 790252 . G A 60 . QNAME=cluster19_000000F;QSTART=24971096;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:11,21 1|0:22:17,5 1|1:15:5,10 +chr20 790270 . C G 60 . QNAME=cluster19_000000F;QSTART=24971078;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:23:5,18 1|0:44:19,25 1|1:39:23,16 +chr20 790371 . C CAAAAAAAAAAAA 60 . QNAME=cluster19_000000F;QSTART=751304;QSTRAND=+;GCPCT=7;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.195622 GT:DP:AD ./.:23:11,12 0|1:23:12,11 ./.:41:17,24 +chr20 790371 . CAAAAAAA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=745400;QSTRAND=+;GCPCT=12;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.271782 GT:DP:AD 0|1:35:25,10 1|0:38:19,19 0|1:35:17,18 +chr20 790371 . CAAAAAAAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=770826;QSTRAND=+;GCPCT=11;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.251629 GT:DP:AD 1|0:36:20,16 ./.:15:10,5 1|0:17:6,11 +chr20 790626 . T G 60 . QNAME=cluster19_000000F;QSTART=24970729;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:13,23 1|0:22:8,14 1|1:40:24,16 +chr20 790639 . C T 60 . QNAME=cluster19_000000F;QSTART=24970716;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:28:20,8 1|0:31:22,9 1|1:16:8,8 +chr20 791233 . A G 60 . QNAME=cluster19_000000F;QSTART=24970122;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:14:5,9 1|0:24:14,10 1|1:33:22,11 +chr20 791888 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=772334;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:34:13,21 ./.:30:10,20 ./.:29:6,23 +chr20 791971 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=772417;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:30:21,9 1|1:19:12,7 1|1:14:5,9 +chr20 792261 . T C 60 . QNAME=cluster19_000000F;QSTART=753205;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:27:21,6 0|1:29:11,18 ./.:24:17,7 +chr20 792795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773241;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:30:20,10 1|1:42:17,25 1|1:29:19,10 +chr20 792866 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773312;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:43:19,24 1|1:31:22,9 1|1:17:10,7 +chr20 792873 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=773319;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:40:24,16 1|1:23:6,17 1|1:20:11,9 +chr20 792876 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773322;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:20:6,14 1|1:47:23,24 1|1:42:23,19 +chr20 792903 . A G 60 . QNAME=cluster19_000000F;QSTART=24968452;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:19:8,11 1|1:26:5,21 ./.:35:25,10 +chr20 793346 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24917353;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:25:19,6 ./.:32:21,11 1|0:15:8,7 +chr20 793395 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=773841;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:23:6,17 1|1:36:25,11 1|1:14:7,7 +chr20 793450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=748471;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:27:13,14 ./.:33:23,10 ./.:17:7,10 +chr20 793500 . C T 60 . QNAME=cluster19_000000F;QSTART=24967855;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:34:21,13 1|0:21:14,7 ./.:11:5,6 +chr20 793560 . C CG 60 . QNAME=HG002-S9-H2-000001F;QSTART=748582;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 0|1:17:12,5 ./.:33:15,18 ./.:29:18,11 +chr20 793560 . CG C 60 . QNAME=cluster19_000000F;QSTART=754505;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:28:13,15 0|1:25:7,18 ./.:39:17,22 +chr20 793560 . CGG C 60 . QNAME=cluster19_000000F;QSTART=24967795;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:29:5,24 1|0:41:19,22 1|1:39:15,24 +chr20 793678 . C G 60 . QNAME=cluster19_000000F;QSTART=754621;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:8,22 0|1:44:20,24 ./.:29:20,9 +chr20 793771 . T G 60 . QNAME=cluster19_000000F;QSTART=24967586;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:27:20,7 1|0:18:13,5 1|1:26:18,8 +chr20 794325 . T C 60 . QNAME=cluster19_000000F;QSTART=24967032;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:33:22,11 1|0:27:18,9 0|1:24:16,8 +chr20 794444 . A G 60 . QNAME=cluster19_000000F;QSTART=24966913;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:21,20 1|0:30:7,23 1|1:28:7,21 +chr20 794733 . T G 60 . QNAME=cluster19_000000F;QSTART=24966624;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:27:7,20 1|0:31:19,12 1|1:40:21,19 +chr20 795199 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915502;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:9,21 ./.:26:6,20 1|0:17:6,11 +chr20 795434 . C A 60 . QNAME=cluster19_000000F;QSTART=24965923;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:30:9,21 1|0:32:17,15 1|1:35:19,16 +chr20 795539 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24915162;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:28:18,10 ./.:22:13,9 1|0:29:8,21 +chr20 795540 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24915161;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:24:18,6 ./.:14:9,5 1|0:34:25,9 +chr20 795731 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=750753;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:16,22 ./.:32:13,19 ./.:23:15,8 +chr20 795805 . G A 60 . QNAME=cluster19_000000F;QSTART=24965552;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:16,17 1|0:32:13,19 ./.:18:7,11 +chr20 795876 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=776322;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:18,15 ./.:22:5,17 1|0:15:9,6 +chr20 795985 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24899026;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:18,17 ./.:38:21,17 0|1:24:13,11 +chr20 796225 . T G 60 . QNAME=cluster19_000000F;QSTART=24965132;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:19,13 1|0:20:10,10 ./.:27:10,17 +chr20 796289 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24898722;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:34:16,18 ./.:33:15,18 0|1:30:25,5 +chr20 796344 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=751366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:42:25,17 1|1:35:19,16 ./.:17:7,10 +chr20 796564 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=751586;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:20,16 ./.:37:14,23 ./.:35:21,14 +chr20 797048 . A G 60 . QNAME=cluster19_000000F;QSTART=757991;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:18,24 0|1:39:17,22 ./.:31:9,22 +chr20 797400 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=777846;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:20:8,12 ./.:34:10,24 ./.:17:10,7 +chr20 797739 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:24:18,6 ./.:36:12,24 ./.:34:11,23 +chr20 797871 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=752893;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:34:16,18 0|1:31:6,25 ./.:43:22,21 +chr20 798053 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753075;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:47:23,24 0|1:28:11,17 ./.:27:15,12 +chr20 798278 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=753300;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:19:12,7 0|1:26:8,18 ./.:24:5,19 +chr20 798467 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=753489;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:20,20 0|1:36:17,19 ./.:28:17,11 +chr20 798479 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=778925;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:22:11,11 0|1:31:16,15 ./.:19:9,10 +chr20 798594 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=753616;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:38:22,16 0|1:39:21,18 ./.:27:5,22 +chr20 798717 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=753739;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:15,21 ./.:34:22,12 ./.:22:6,16 +chr20 798853 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=779299;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:46:25,21 ./.:24:5,19 ./.:35:16,19 +chr20 799277 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24962078;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD ./.:18:6,12 1|0:25:15,10 1|1:33:10,23 +chr20 799277 . C CAAAA 60 . QNAME=HG002-S9-H2-000001F;QSTART=754300;QSTRAND=+;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.360964 GT:DP:AD 0|1:26:18,8 ./.:27:19,8 ./.:26:12,14 +chr20 799300 . C T 60 . QNAME=cluster19_000000F;QSTART=24962055;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:39:17,22 1|0:26:21,5 1|1:24:7,17 +chr20 799510 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=779956;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:31:16,15 1|0:30:25,5 1|1:28:6,22 +chr20 799644 . G A 60 . QNAME=cluster19_000000F;QSTART=24961711;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:19,7 1|0:33:9,24 1|1:43:20,23 +chr20 799744 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=780190;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:5,22 ./.:14:8,6 ./.:18:6,12 +chr20 800427 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=780873;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:29:23,6 ./.:24:11,13 ./.:13:5,8 +chr20 800604 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781050;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:25,14 ./.:32:25,7 ./.:34:19,15 +chr20 800640 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781086;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:27:17,10 ./.:32:20,12 ./.:39:16,23 +chr20 800671 . GCACTCACCCCAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=781118;QSTRAND=+;GCPCT=61;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.83459 GT:DP:AD 1|0:25:17,8 ./.:39:24,15 ./.:15:7,8 +chr20 800707 . G A 60 . QNAME=cluster19_000000F;QSTART=24960676;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:15,16 1|0:35:10,25 1|1:12:7,5 +chr20 800818 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781252;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:19:14,5 1|0:30:21,9 1|1:17:7,10 +chr20 800884 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=781318;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:27:15,12 ./.:28:17,11 ./.:31:23,8 +chr20 800927 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781361;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:22:12,10 ./.:32:12,20 ./.:22:13,9 +chr20 800955 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781389;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:24:19,5 ./.:43:24,19 ./.:36:21,15 +chr20 800960 . CCTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781395;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|0:37:25,12 ./.:25:17,8 ./.:34:22,12 +chr20 801002 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781433;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:17:10,7 ./.:29:18,11 ./.:30:18,12 +chr20 801097 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781528;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:41:18,23 ./.:36:15,21 ./.:37:15,22 +chr20 801205 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781636;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:15,20 ./.:27:6,21 ./.:32:18,14 +chr20 801403 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=781834;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:23:7,16 ./.:41:22,19 ./.:21:13,8 +chr20 801427 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781858;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:21:7,14 ./.:27:8,19 ./.:23:7,16 +chr20 801488 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=781919;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:13,5 1|0:35:13,22 1|1:23:7,16 +chr20 801793 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782224;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:13,23 ./.:32:14,18 ./.:29:16,13 +chr20 801807 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782238;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:35:20,15 ./.:46:22,24 ./.:36:25,11 +chr20 801853 . CAAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24908874;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0.685475 GT:DP:AD ./.:23:16,7 ./.:29:24,5 1|0:25:16,9 +chr20 801853 . CAAATAAAT C 60 . QNAME=cluster19_000000F;QSTART=24959530;QSTRAND=-;GCPCT=11;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.612197 GT:DP:AD ./.:37:13,24 1|0:30:13,17 0|1:39:16,23 +chr20 801854 . AAATAAAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=782286;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD 1|0:33:14,19 ./.:40:15,25 ./.:41:23,18 +chr20 801893 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=782317;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:42:21,21 ./.:36:24,12 ./.:30:19,11 +chr20 802063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782487;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:20:6,14 ./.:23:7,16 ./.:23:7,16 +chr20 802155 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=757153;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:33:20,13 1|0:37:18,19 1|1:30:11,19 +chr20 802331 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=782755;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:26:15,11 1|0:29:8,21 ./.:46:21,25 +chr20 802369 . G A 60 . QNAME=cluster19_000000F;QSTART=763312;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:22:6,16 0|1:37:18,19 ./.:23:9,14 +chr20 802531 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757529;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:39:16,23 ./.:28:5,23 ./.:24:19,5 +chr20 802606 . C CA 60 . QNAME=HG002-S9-H2-000001F;QSTART=757605;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:43:24,19 ./.:38:20,18 0|1:24:12,12 +chr20 802739 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=757738;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:14,24 0|1:33:24,9 1|0:43:21,22 +chr20 803221 . C T 60 . QNAME=cluster19_000000F;QSTART=24958170;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:14:6,8 1|1:26:10,16 1|1:48:25,23 +chr20 803367 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=783791;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:14,16 1|1:28:10,18 1|1:17:9,8 +chr20 803419 . C T 60 . QNAME=cluster19_000000F;QSTART=24957972;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:13,8 1|1:29:5,24 1|1:34:22,12 +chr20 803499 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=783923;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:36:17,19 ./.:15:6,9 ./.:23:10,13 +chr20 803703 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784127;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:27:13,14 1|1:25:5,20 1|1:16:11,5 +chr20 803760 . C T 60 . QNAME=cluster19_000000F;QSTART=24957631;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:15,22 1|1:34:15,19 1|1:21:13,8 +chr20 804087 . G A 60 . QNAME=cluster19_000000F;QSTART=24957304;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:30:15,15 1|1:16:6,10 1|1:41:20,21 +chr20 804255 . C T 60 . QNAME=cluster19_000000F;QSTART=24957136;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:29:6,23 1|1:30:9,21 1|1:29:21,8 +chr20 804315 . C G 60 . QNAME=cluster19_000000F;QSTART=24957076;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:47:22,25 1|1:29:10,19 1|1:33:25,8 +chr20 804381 . C T 60 . QNAME=cluster19_000000F;QSTART=24957010;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:20,23 1|1:48:24,24 1|1:39:16,23 +chr20 804444 . G A 60 . QNAME=cluster19_000000F;QSTART=24956947;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:22:9,13 1|1:37:12,25 1|1:33:25,8 +chr20 804465 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=784889;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:25:8,17 ./.:27:7,20 ./.:40:21,19 +chr20 804804 . A AT 60 . QNAME=HG002-S9-H1-000001F;QSTART=785229;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:27:22,5 ./.:33:17,16 ./.:23:11,12 +chr20 804804 . AT A 60 . QNAME=cluster19_000000F;QSTART=24956587;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:34:19,15 1|1:27:16,11 1|1:34:19,15 +chr20 805255 . T C 60 . QNAME=cluster19_000000F;QSTART=24956137;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:46:25,21 1|1:30:19,11 1|1:23:5,18 +chr20 805274 . T C 60 . QNAME=cluster19_000000F;QSTART=24956118;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:27:13,14 1|1:16:7,9 1|1:43:23,20 +chr20 805356 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=785781;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:27:22,5 1|1:27:16,11 1|1:40:24,16 +chr20 805464 . C G 60 . QNAME=cluster19_000000F;QSTART=24955928;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:11,17 1|1:41:24,17 1|1:46:25,21 +chr20 805609 . AAG A 60 . QNAME=cluster19_000000F;QSTART=24955783;QSTRAND=-;GCPCT=33;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:48:25,23 1|1:29:21,8 1|1:17:10,7 +chr20 805627 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24889420;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:21:12,9 ./.:26:14,12 0|1:18:11,7 +chr20 805812 . C T 60 . QNAME=cluster19_000000F;QSTART=24955582;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:25,11 1|1:34:17,17 1|1:37:12,25 +chr20 806032 . T TA 60 . QNAME=cluster23_scaffold_2;QSTART=24889015;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:28:20,8 ./.:31:21,10 0|1:15:9,6 +chr20 806060 . A G 60 . QNAME=cluster19_000000F;QSTART=24955334;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:25,5 1|1:30:8,22 1|1:31:18,13 +chr20 806121 . T TA 60 . QNAME=HG002-S9-H1-000001F;QSTART=786547;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|1:35:11,24 1|1:30:6,24 1|1:35:21,14 +chr20 806416 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=786842;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:29:18,11 1|1:42:20,22 1|1:36:18,18 +chr20 806539 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24888507;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:41:18,23 ./.:23:7,16 0|1:20:15,5 +chr20 806698 . A G 60 . QNAME=cluster19_000000F;QSTART=24954695;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:33:22,11 1|1:29:20,9 1|1:19:8,11 +chr20 806714 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24904019;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:21,11 ./.:29:10,19 1|0:19:8,11 +chr20 807227 . T TTTTATTTATTTATTTATTTA 60 . QNAME=cluster19_000000F;QSTART=24954146;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.395929 GT:DP:AD ./.:36:21,15 1|1:40:20,20 1|1:27:12,15 +chr20 807315 . A G 60 . QNAME=cluster19_000000F;QSTART=24954058;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:40:18,22 1|1:38:16,22 1|1:24:11,13 +chr20 807395 . C T 60 . QNAME=cluster19_000000F;QSTART=24953978;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:6,22 1|1:42:23,19 1|1:46:23,23 +chr20 807886 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24887141;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:34:14,20 ./.:16:8,8 0|1:25:15,10 +chr20 808070 . G A 60 . QNAME=cluster19_000000F;QSTART=24953303;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:25,21 1|1:34:24,10 1|1:15:6,9 +chr20 808486 . C T 60 . QNAME=cluster19_000000F;QSTART=24952887;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:10,15 1|1:39:16,23 1|1:41:21,20 +chr20 808580 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24886448;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:33:20,13 ./.:29:24,5 0|1:35:23,12 +chr20 808747 . T C 60 . QNAME=cluster19_000000F;QSTART=24952626;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:50:25,25 1|1:35:19,16 1|1:46:23,23 +chr20 808798 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24886230;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:40:20,20 ./.:29:15,14 0|1:20:14,6 +chr20 808973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=789399;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:35:24,11 1|1:28:5,23 1|1:16:8,8 +chr20 809124 . T TA 60 . QNAME=cluster19_000000F;QSTART=24952248;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:31:11,20 1|1:31:9,22 1|0:26:5,21 +chr20 809124 . T TAA 60 . QNAME=cluster23_scaffold_2;QSTART=24885902;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:28:18,10 ./.:30:6,24 0|1:32:17,15 +chr20 809392 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=789818;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:14:8,6 1|1:45:25,20 1|1:34:22,12 +chr20 809449 . C A 60 . QNAME=cluster19_000000F;QSTART=24951923;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:22:8,14 1|1:13:6,7 1|1:18:5,13 +chr20 809476 . C T 60 . QNAME=cluster19_000000F;QSTART=24951896;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:26:15,11 1|1:31:12,19 1|1:23:13,10 +chr20 809653 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=790079;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:48:23,25 ./.:29:16,13 ./.:21:5,16 +chr20 809775 . T G 60 . QNAME=cluster19_000000F;QSTART=24951597;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:14,6 1|0:35:21,14 ./.:37:21,16 +chr20 810079 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790505;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:25:16,9 1|1:33:8,25 1|1:43:21,22 +chr20 810083 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=790509;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:31:25,6 ./.:38:19,19 ./.:20:9,11 +chr20 810565 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=790991;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:42:22,20 1|1:27:11,16 1|1:33:17,16 +chr20 810659 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791085;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:24:13,11 1|1:28:23,5 1|1:20:7,13 +chr20 810742 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=791168;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:20:14,6 ./.:28:23,5 ./.:24:7,17 +chr20 811032 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791458;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:22:16,6 ./.:34:22,12 ./.:32:18,14 +chr20 811102 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791528;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:20:12,8 ./.:30:9,21 ./.:42:25,17 +chr20 811314 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=791740;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:14:8,6 1|1:30:5,25 1|1:27:8,19 +chr20 811539 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=791965;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:37:14,23 ./.:26:19,7 ./.:25:6,19 +chr20 811587 . G A 60 . QNAME=cluster19_000000F;QSTART=24949785;QSTRAND=-;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:12:5,7 1|1:36:12,24 1|1:46:22,24 +chr20 811839 . A AG 60 . QNAME=cluster23_scaffold_2;QSTART=24883186;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:34:12,22 ./.:11:6,5 0|1:30:6,24 +chr20 812140 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=792566;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:22,13 ./.:36:18,18 ./.:31:13,18 +chr20 812429 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=792855;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:25:8,17 ./.:28:15,13 ./.:37:23,14 +chr20 812492 . A C 60 . QNAME=cluster19_000000F;QSTART=24948880;QSTRAND=-;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:30:20,10 1|1:14:9,5 1|1:50:25,25 +chr20 813255 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=793681;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:21,19 ./.:38:15,23 1|0:35:23,12 +chr20 813573 . C T 60 . QNAME=cluster19_000000F;QSTART=24947799;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:19,18 1|1:42:18,24 0|1:35:11,24 +chr20 813792 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=794218;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:22:13,9 ./.:20:14,6 1|0:25:20,5 +chr20 813863 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=794289;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:33:16,17 1|1:39:14,25 1|1:44:22,22 +chr20 814342 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24880682;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:36:17,19 ./.:27:18,9 0|1:38:15,23 +chr20 814479 . AT A 60 . QNAME=cluster23_scaffold_2;QSTART=24880545;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:37:23,14 ./.:23:13,10 0|1:28:12,16 +chr20 814505 . T TTTTA 60 . QNAME=cluster19_000000F;QSTART=24946863;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.360964 GT:DP:AD ./.:24:15,9 1|1:15:10,5 0|1:42:23,19 +chr20 814505 . T TTTTATTTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=794932;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.382102 GT:DP:AD 1|1:40:15,25 ./.:25:12,13 1|0:33:24,9 +chr20 815073 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=795507;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:34:23,11 ./.:30:13,17 1|0:17:5,12 +chr20 815387 . A T 60 . QNAME=cluster19_000000F;QSTART=24945981;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:10,16 1|1:14:6,8 0|1:39:14,25 +chr20 815789 . C A 60 . QNAME=cluster19_000000F;QSTART=24945579;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:36:23,13 1|1:27:9,18 ./.:37:23,14 +chr20 816179 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=796613;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:38:19,19 ./.:17:11,6 1|0:27:14,13 +chr20 816272 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24878749;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD ./.:19:11,8 ./.:24:19,5 0|1:22:9,13 +chr20 816693 . GA G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797128;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD 1|0:17:7,10 1|1:23:15,8 1|0:28:17,11 +chr20 816723 . TTGTGCG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=797157;QSTRAND=+;GCPCT=57;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.724408 GT:DP:AD 1|0:42:21,21 ./.:44:24,20 1|0:30:8,22 +chr20 816728 . C CGTGT 60 . QNAME=cluster23_scaffold_2;QSTART=24878290;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.760964 GT:DP:AD ./.:27:18,9 ./.:26:7,19 0|1:36:16,20 +chr20 816728 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=771737;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.792481 GT:DP:AD 0|1:15:10,5 ./.:14:7,7 ./.:30:14,16 +chr20 816757 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=797184;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:33:16,17 ./.:19:5,14 1|0:14:8,6 +chr20 817397 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24877621;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:40:20,20 ./.:20:15,5 0|1:33:16,17 +chr20 817512 . A G 60 . QNAME=cluster19_000000F;QSTART=24943857;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:32:8,24 1|0:10:5,5 ./.:17:8,9 +chr20 817544 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=797972;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:35:25,10 ./.:27:12,15 1|0:27:6,21 +chr20 817544 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=772551;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 0|1:28:12,16 0|1:35:21,14 ./.:23:10,13 +chr20 817544 . GAA G 60 . QNAME=cluster19_000000F;QSTART=24943825;QSTRAND=-;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:24:12,12 1|0:24:7,17 0|1:30:23,7 +chr20 817584 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798012;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:27:7,20 ./.:35:15,20 1|0:18:13,5 +chr20 817587 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=798015;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:13,21 ./.:37:15,22 1|0:19:8,11 +chr20 817664 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798092;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:23:8,15 ./.:20:12,8 1|0:33:21,12 +chr20 817690 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798118;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:12,15 1|1:32:21,11 1|1:26:8,18 +chr20 817718 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=798146;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:15,16 ./.:11:5,6 1|0:37:23,14 +chr20 817808 . T C 60 . QNAME=cluster19_000000F;QSTART=24943563;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:27:21,6 1|1:38:25,13 ./.:41:25,16 +chr20 817809 . T A 60 . QNAME=cluster19_000000F;QSTART=24943562;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:35:23,12 1|1:13:5,8 ./.:26:19,7 +chr20 817850 . G GA 60 . QNAME=HG002-S9-H1-000001F;QSTART=798279;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:41:22,19 ./.:17:8,9 ./.:41:22,19 +chr20 817871 . G GA 60 . QNAME=cluster23_scaffold_2;QSTART=24877148;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:24:18,6 ./.:37:14,23 0|1:26:13,13 +chr20 818023 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798452;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:36:24,12 ./.:21:7,14 1|0:29:18,11 +chr20 818055 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876963;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:21:9,12 ./.:43:19,24 0|1:29:19,10 +chr20 818068 . T TG 60 . QNAME=cluster23_scaffold_2;QSTART=24876949;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:30:8,22 ./.:27:11,16 0|1:26:20,6 +chr20 818085 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=798514;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:31:14,17 ./.:17:11,6 1|0:28:9,19 +chr20 818112 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=798541;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:21:12,9 1|1:24:5,19 1|1:35:14,21 +chr20 818177 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24876840;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:12,13 ./.:18:13,5 0|1:40:24,16 +chr20 818388 . A AG 60 . QNAME=cluster23_scaffold_3;QSTART=24892321;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD ./.:48:24,24 ./.:36:14,22 1|0:48:23,25 +chr20 818488 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=773494;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:33:24,9 ./.:14:5,9 ./.:33:15,18 +chr20 818488 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=798918;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD 1|0:14:9,5 ./.:27:21,6 ./.:28:10,18 +chr20 818644 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=799075;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:23:11,12 ./.:32:16,16 1|0:45:25,20 +chr20 818794 . C CTT 60 . QNAME=HG002-S9-H1-000001F;QSTART=799226;QSTRAND=+;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD 1|1:21:11,10 ./.:30:10,20 1|0:19:9,10 +chr20 818794 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24876223;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:17:10,7 ./.:31:13,18 0|1:34:14,20 +chr20 818839 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24876179;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:19:13,6 ./.:44:20,24 0|1:36:14,22 +chr20 818891 . A G 60 . QNAME=cluster19_000000F;QSTART=24942480;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:34:9,25 1|1:26:20,6 ./.:20:7,13 +chr20 818898 . T TC 60 . QNAME=cluster23_scaffold_2;QSTART=24876119;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:21:9,12 ./.:44:21,23 0|1:33:10,23 +chr20 818940 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=799373;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:35:13,22 ./.:42:18,24 1|1:32:15,17 +chr20 818970 . G C 60 . QNAME=cluster19_000000F;QSTART=24942401;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:27:13,14 1|1:28:21,7 ./.:21:5,16 +chr20 819017 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774025;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:29:14,15 ./.:31:25,6 ./.:27:15,12 +chr20 819249 . T C 60 . QNAME=cluster19_000000F;QSTART=780213;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:24:7,17 0|1:25:5,20 ./.:28:5,23 +chr20 819251 . C A 60 . QNAME=HG002-S9-H2-000001F;QSTART=774259;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:34:21,13 ./.:27:17,10 ./.:27:20,7 +chr20 820514 . T TTTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=802126;QSTRAND=+;GCPCT=25;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.405639 GT:DP:AD 1|1:23:14,9 1|1:36:23,13 1|1:25:9,16 +chr20 820545 . T TTC 60 . QNAME=cluster19_000000F;QSTART=24937541;QSTRAND=-;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:17:10,7 1|1:29:10,19 ./.:23:15,8 +chr20 820587 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=802201;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:31:16,15 ./.:31:16,15 1|0:27:18,9 +chr20 820752 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=802366;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:39:24,15 ./.:40:24,16 1|0:37:20,17 +chr20 821376 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24871732;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:28:20,8 ./.:16:5,11 0|1:22:17,5 +chr20 821480 . G T 60 . QNAME=cluster19_000000F;QSTART=24936606;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:35:17,18 1|1:41:18,23 0|1:17:10,7 +chr20 822153 . A AT 60 . QNAME=cluster23_scaffold_2;QSTART=24870954;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:41:23,18 ./.:36:23,13 0|1:23:12,11 +chr20 822153 . ATTT A 60 . QNAME=cluster19_000000F;QSTART=24935933;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD ./.:47:23,24 1|1:26:15,11 ./.:48:23,25 +chr20 822153 . ATTTT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=803768;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.360964 GT:DP:AD 1|1:27:11,16 ./.:34:18,16 1|0:29:8,21 +chr20 822622 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24870485;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:12,24 ./.:36:17,19 0|1:25:6,19 +chr20 823109 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=804719;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:38:15,23 1|1:39:16,23 1|1:28:9,19 +chr20 824454 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806064;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:40:22,18 1|1:18:9,9 1|1:38:24,14 +chr20 825318 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=806928;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:16:10,6 ./.:33:23,10 1|0:24:17,7 +chr20 825338 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=806948;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:40:19,21 ./.:21:12,9 1|0:32:21,11 +chr20 825828 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807438;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:34:23,11 1|1:27:5,22 1|1:39:14,25 +chr20 826034 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=807644;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:46:25,21 1|1:20:8,12 1|1:47:24,23 +chr20 826235 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=807845;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:35:15,20 1|1:48:23,25 1|1:40:17,23 +chr20 826944 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808554;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:36:23,13 ./.:35:20,15 1|0:23:12,11 +chr20 827056 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=808666;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:41:22,19 ./.:19:11,8 1|0:29:24,5 +chr20 827617 . C CA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809228;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 1|1:25:12,13 ./.:20:5,15 1|0:24:11,13 +chr20 827617 . C CAA 60 . QNAME=cluster19_000000F;QSTART=24930470;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:39:24,15 1|1:45:24,21 0|1:44:23,21 +chr20 827787 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=809398;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:16,24 1|1:48:23,25 1|1:34:20,14 +chr20 827840 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24865265;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:40:25,15 ./.:33:14,19 0|1:40:19,21 +chr20 827959 . G A 60 . QNAME=cluster19_000000F;QSTART=24930128;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:24:9,15 1|1:32:25,7 ./.:27:11,16 +chr20 828060 . G GAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=809672;QSTRAND=+;GCPCT=20;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.360964 GT:DP:AD 1|1:25:6,19 1|1:39:17,22 0|1:32:19,13 +chr20 828060 . G GAAAAA 60 . QNAME=cluster23_scaffold_3;QSTART=24881385;QSTRAND=-;GCPCT=16;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.325011 GT:DP:AD ./.:26:11,15 ./.:31:16,15 1|0:24:9,15 +chr20 828725 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=810340;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:18:5,13 1|1:39:23,16 1|1:39:18,21 +chr20 828856 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810471;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:33:21,12 1|1:28:13,15 1|1:37:23,14 +chr20 828857 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=810472;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:49:25,24 1|1:42:23,19 1|1:43:21,22 +chr20 828946 . C T 60 . QNAME=cluster19_000000F;QSTART=24929137;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:29:15,14 1|1:27:9,18 ./.:34:20,14 +chr20 829194 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24863907;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:13,16 ./.:26:15,11 0|1:49:24,25 +chr20 829287 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=810902;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:23:6,17 1|1:33:11,22 1|1:38:23,15 +chr20 830064 . A G 60 . QNAME=cluster19_000000F;QSTART=24928019;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:7,14 1|1:43:24,19 0|1:14:6,8 +chr20 830268 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24862831;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:37:12,25 ./.:29:21,8 0|1:38:15,23 +chr20 830270 . T C 60 . QNAME=cluster19_000000F;QSTART=24927813;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:12,21 1|1:36:20,16 ./.:16:8,8 +chr20 830311 . A G 60 . QNAME=cluster19_000000F;QSTART=24927772;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:24:13,11 1|1:48:25,23 0|1:17:12,5 +chr20 830449 . C CTT 60 . QNAME=cluster19_000000F;QSTART=24927632;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:37:23,14 1|1:28:6,22 0|1:33:13,20 +chr20 830449 . CT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=812065;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:30:7,23 ./.:36:16,20 ./.:21:10,11 +chr20 830787 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=812401;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:17:7,10 1|1:29:8,21 1|1:37:18,19 +chr20 830864 . G A 60 . QNAME=cluster19_000000F;QSTART=24927217;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:10,20 1|1:29:23,6 0|1:49:24,25 +chr20 831203 . G C 60 . QNAME=cluster19_000000F;QSTART=24926878;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:26:14,12 1|1:28:9,19 ./.:30:7,23 +chr20 831231 . T C 60 . QNAME=cluster19_000000F;QSTART=24926850;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:28:23,5 1|1:29:5,24 0|1:31:10,21 +chr20 831257 . C CA 60 . QNAME=cluster19_000000F;QSTART=795540;QSTRAND=+;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:24:12,12 0|1:45:22,23 1|1:45:22,23 +chr20 831332 . T C 60 . QNAME=cluster19_000000F;QSTART=24926749;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:20:7,13 1|1:31:25,6 0|1:29:9,20 +chr20 831358 . A T 60 . QNAME=cluster19_000000F;QSTART=24926723;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:33:13,20 1|1:33:22,11 0|1:39:14,25 +chr20 831366 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24861730;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:38:14,24 ./.:38:18,20 0|1:22:17,5 +chr20 832087 . A C 60 . QNAME=cluster19_000000F;QSTART=24925994;QSTRAND=-;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:28:13,15 1|1:28:13,15 0|1:41:21,20 +chr20 833024 . A G 60 . QNAME=cluster19_000000F;QSTART=24925057;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:29:13,16 1|0:34:14,20 ./.:29:6,23 +chr20 833025 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=814639;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:29:14,15 0|1:23:7,16 0|1:24:9,15 +chr20 833025 . AG A 60 . QNAME=cluster19_000000F;QSTART=24925056;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:29:14,15 1|0:28:6,22 ./.:17:8,9 +chr20 833026 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=814640;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:26:11,15 0|1:28:11,17 0|1:23:11,12 +chr20 833026 . G GA 60 . QNAME=cluster23_scaffold_3;QSTART=24876417;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:36:20,16 ./.:21:8,13 1|0:24:9,15 +chr20 833108 . C G 60 . QNAME=cluster19_000000F;QSTART=24924974;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:39:15,24 1|1:33:15,18 0|1:38:22,16 +chr20 835141 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24857955;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:23:10,13 ./.:29:19,10 0|1:34:14,20 +chr20 835164 . A ATC 60 . QNAME=HG002-S9-H1-000001F;QSTART=816779;QSTRAND=+;GCPCT=33;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.792481 GT:DP:AD 1|1:37:21,16 ./.:41:17,24 ./.:24:7,17 +chr20 835200 . C A 60 . QNAME=cluster23_scaffold_3;QSTART=24874243;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:12,24 ./.:37:22,15 1|0:37:19,18 +chr20 835200 . C CTCTATA 60 . QNAME=cluster23_scaffold_2;QSTART=24857890;QSTRAND=-;GCPCT=28;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.778328 GT:DP:AD ./.:19:6,13 ./.:38:18,20 0|1:33:24,9 +chr20 835202 . A C 60 . QNAME=cluster19_000000F;QSTART=24922880;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:21:7,14 1|1:21:5,16 ./.:40:18,22 +chr20 836246 . TG T 60 . QNAME=cluster19_000000F;QSTART=24921836;QSTRAND=-;GCPCT=50;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:36:12,24 1|1:31:12,19 0|1:32:20,12 +chr20 837045 . G GTT 60 . QNAME=cluster23_scaffold_2;QSTART=24856044;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD ./.:44:25,19 ./.:41:16,25 0|1:19:5,14 +chr20 838387 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24854702;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:25:19,6 ./.:21:9,12 0|1:29:24,5 +chr20 841266 . C T 60 . QNAME=cluster19_000000F;QSTART=805548;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:30:19,11 0|1:21:11,10 0|1:21:6,15 +chr20 842793 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24850296;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:29:21,8 ./.:38:17,21 0|1:43:22,21 +chr20 842861 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24850228;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:36:17,19 ./.:19:6,13 0|1:12:6,6 +chr20 843131 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24849958;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:18,9 ./.:30:13,17 0|1:41:25,16 +chr20 843133 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24849956;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:22,13 ./.:29:17,12 0|1:44:22,22 +chr20 843148 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824764;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:36:13,23 ./.:35:22,13 ./.:17:6,11 +chr20 843149 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=824765;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:12,20 ./.:38:22,16 ./.:38:21,17 +chr20 843779 . C A 60 . QNAME=cluster23_scaffold_2;QSTART=24849310;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:31:11,20 ./.:35:23,12 0|1:30:17,13 +chr20 843805 . T C 60 . QNAME=cluster19_000000F;QSTART=808087;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:36:18,18 0|1:28:17,11 ./.:24:12,12 +chr20 843879 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24849210;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:35:23,12 ./.:19:7,12 0|1:16:8,8 +chr20 844439 . TGCCCAGGTC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=826056;QSTRAND=+;GCPCT=70;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.92322 GT:DP:AD 1|1:26:11,15 1|1:28:12,16 1|1:29:14,15 +chr20 844675 . C CT 60 . QNAME=HG002-S9-H2-000001F;QSTART=800823;QSTRAND=+;GCPCT=50;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:39:22,17 0|1:26:5,21 1|1:35:15,20 +chr20 845035 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=826642;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:32:21,11 1|1:28:21,7 1|1:29:7,22 +chr20 845849 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=827456;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:36:24,12 ./.:21:10,11 1|1:42:19,23 +chr20 845870 . C G 60 . QNAME=cluster19_000000F;QSTART=810144;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:13:7,6 0|1:34:12,22 ./.:36:17,19 +chr20 846023 . G T 60 . QNAME=cluster19_000000F;QSTART=24912069;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:41:19,22 1|0:25:13,12 ./.:19:12,7 +chr20 846067 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=827674;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:22:17,5 ./.:30:10,20 1|1:44:23,21 +chr20 846626 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=828233;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:26:21,5 ./.:28:6,22 1|1:26:18,8 +chr20 847610 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=829217;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:17:6,11 ./.:30:7,23 1|1:21:7,14 +chr20 847932 . C T 60 . QNAME=cluster19_000000F;QSTART=812206;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:23:10,13 0|1:37:16,21 ./.:37:22,15 +chr20 847948 . C T 60 . QNAME=cluster19_000000F;QSTART=812222;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:21,15 0|1:20:7,13 ./.:32:14,18 +chr20 848007 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829614;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:43:22,21 ./.:11:5,6 1|1:34:13,21 +chr20 848148 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=829755;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:27:6,21 0|1:27:17,10 0|1:20:14,6 +chr20 848655 . G GC 60 . QNAME=cluster23_scaffold_2;QSTART=24844441;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:31:15,16 ./.:29:24,5 0|1:45:24,21 +chr20 848655 . G GCCC 60 . QNAME=cluster19_000000F;QSTART=812930;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.405639 GT:DP:AD ./.:21:7,14 0|1:20:15,5 ./.:13:6,7 +chr20 848966 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830573;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:16:5,11 ./.:20:6,14 1|1:15:7,8 +chr20 849159 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830766;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:29:18,11 ./.:22:17,5 1|1:21:11,10 +chr20 849210 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=830817;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:22,18 1|1:40:25,15 1|1:26:14,12 +chr20 849245 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830852;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:40:17,23 ./.:47:23,24 1|1:13:8,5 +chr20 849258 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=830866;QSTRAND=+;GCPCT=50;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:31:18,13 0|1:43:24,19 1|1:21:16,5 +chr20 849509 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831115;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:28:14,14 ./.:40:25,15 1|1:45:23,22 +chr20 849655 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=831261;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:37:24,13 ./.:29:21,8 1|1:16:10,6 +chr20 849665 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831271;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:24:13,11 ./.:31:22,9 1|1:27:5,22 +chr20 849770 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831376;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:25:17,8 ./.:28:19,9 1|1:17:8,9 +chr20 849895 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=831501;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:17:5,12 ./.:32:19,13 1|1:28:8,20 +chr20 850094 . T TACACAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=831701;QSTRAND=+;GCPCT=42;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.724408 GT:DP:AD 1|0:34:11,23 ./.:35:14,21 0|1:30:5,25 +chr20 850094 . T TACACACACAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=806242;QSTRAND=+;GCPCT=45;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.674294 GT:DP:AD 0|1:16:10,6 ./.:26:13,13 ./.:21:12,9 +chr20 850134 . C CACACACACACAT 60 . QNAME=cluster19_000000F;QSTART=814411;QSTRAND=+;GCPCT=46;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.65716 GT:DP:AD ./.:43:25,18 0|1:34:24,10 ./.:33:16,17 +chr20 850134 . C CACACAT 60 . QNAME=cluster19_000000F;QSTART=24907952;QSTRAND=-;GCPCT=42;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.724408 GT:DP:AD ./.:41:17,24 1|0:22:9,13 1|0:16:5,11 +chr20 850182 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=831794;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:23,7 ./.:27:12,15 1|1:33:11,22 +chr20 850404 . C T 60 . QNAME=cluster19_000000F;QSTART=814692;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:8,23 0|1:38:25,13 ./.:34:15,19 +chr20 850450 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=832062;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:40:20,20 0|1:28:14,14 1|1:26:6,20 +chr20 850608 . A G 60 . QNAME=cluster19_000000F;QSTART=814896;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:17,14 0|1:33:18,15 ./.:30:8,22 +chr20 850762 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=832374;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:32:16,16 ./.:39:23,16 1|1:21:12,9 +chr20 850818 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=832430;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:30:12,18 0|1:37:19,18 1|1:43:22,21 +chr20 851565 . G A 60 . QNAME=cluster19_000000F;QSTART=815853;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:31:7,24 0|1:22:9,13 ./.:30:22,8 +chr20 851698 . C T 60 . QNAME=cluster19_000000F;QSTART=24906388;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:32:18,14 1|0:42:17,25 ./.:38:24,14 +chr20 852010 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=833622;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:43:24,19 ./.:33:21,12 1|1:29:20,9 +chr20 852120 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=833732;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:44:23,21 ./.:29:7,22 1|1:39:14,25 +chr20 852153 . C T 60 . QNAME=cluster19_000000F;QSTART=816441;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:19,23 0|1:44:20,24 ./.:40:22,18 +chr20 852155 . T C 60 . QNAME=cluster19_000000F;QSTART=816443;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:32:25,7 0|1:16:10,6 ./.:37:15,22 +chr20 852165 . G A 60 . QNAME=cluster19_000000F;QSTART=816453;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:33:11,22 0|1:34:11,23 ./.:29:14,15 +chr20 852596 . ACT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=834209;QSTRAND=+;GCPCT=33;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD 1|1:20:11,9 0|1:28:5,23 1|1:42:20,22 +chr20 852714 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=834324;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:41:22,19 0|1:13:5,8 1|1:33:10,23 +chr20 852722 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=834332;QSTRAND=+;GCPCT=0;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:30:17,13 ./.:42:19,23 1|1:37:12,25 +chr20 853509 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=835119;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:22:10,12 ./.:34:25,9 1|1:31:11,20 +chr20 853837 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=835447;QSTRAND=+;GCPCT=100;GTCNT=1,0,0,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:41:24,17 ./.:35:14,21 1|1:27:6,21 +chr20 854857 . TTGTG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=836468;QSTRAND=+;GCPCT=40;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.485475 GT:DP:AD 1|0:17:7,10 1|1:19:5,14 ./.:29:13,16 +chr20 854857 . TTGTGTG T 60 . QNAME=HG002-S9-H2-000001F;QSTART=811013;QSTRAND=+;GCPCT=42;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.492614 GT:DP:AD 0|1:26:12,14 ./.:24:13,11 1|1:26:5,21 +chr20 855703 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=837309;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:34:11,23 1|1:32:20,12 1|1:36:21,15 +chr20 855883 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=812032;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:42:18,24 ./.:46:24,22 ./.:16:7,9 +chr20 856057 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837663;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:9,24 1|1:49:24,25 1|1:26:21,5 +chr20 856168 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=837774;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:24:10,14 0|1:31:7,24 ./.:23:11,12 +chr20 856433 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838039;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:34:15,19 1|1:29:18,11 1|1:43:18,25 +chr20 856781 . G A 60 . QNAME=cluster19_000000F;QSTART=821063;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:46:25,21 0|1:13:7,6 ./.:39:17,22 +chr20 857157 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=838763;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:17:6,11 1|1:25:13,12 1|1:27:21,6 +chr20 857179 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=838785;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:16:10,6 1|1:29:7,22 1|1:24:17,7 +chr20 857617 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=839223;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:40:17,23 1|1:22:11,11 1|1:33:22,11 +chr20 858872 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840478;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:32:12,20 1|1:41:23,18 1|1:28:9,19 +chr20 858925 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=840531;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:26:13,13 1|1:29:22,7 1|1:35:15,20 +chr20 859762 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=841368;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:33:11,22 1|1:16:8,8 1|1:41:25,16 +chr20 860453 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=842059;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:23:10,13 0|1:30:22,8 ./.:18:5,13 +chr20 860488 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=816637;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:19:6,13 1|0:21:5,16 1|1:21:13,8 +chr20 861973 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843579;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:42:23,19 1|1:35:15,20 1|1:32:19,13 +chr20 861975 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843581;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:39:18,21 1|1:25:9,16 1|1:14:7,7 +chr20 862051 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=843657;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:15:10,5 1|1:29:8,21 1|1:37:20,17 +chr20 862053 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843659;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:16:7,9 1|1:19:11,8 1|1:30:25,5 +chr20 862244 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=818394;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:24:15,9 1|0:35:10,25 1|0:13:6,7 +chr20 862244 . CTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24830855;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:39:25,14 ./.:31:14,17 0|1:15:10,5 +chr20 862270 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=843876;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:42:24,18 1|0:45:24,21 1|1:44:19,25 +chr20 862270 . T TA 60 . QNAME=cluster19_000000F;QSTART=826553;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:21:11,10 0|1:37:15,22 ./.:37:23,14 +chr20 862295 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=843901;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:31:6,25 1|1:32:15,17 1|1:27:5,22 +chr20 862400 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=818548;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:34:19,15 1|0:15:9,6 1|1:45:23,22 +chr20 863200 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=844806;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:31:8,23 0|1:35:22,13 ./.:37:15,22 +chr20 863302 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=819450;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:15:6,9 1|0:29:16,13 1|1:28:12,16 +chr20 863798 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845405;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|1:45:23,22 1|1:28:21,7 1|1:30:12,18 +chr20 864029 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=820176;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:31:17,14 1|0:39:21,18 1|1:24:8,16 +chr20 864049 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=820196;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:40:22,18 1|0:47:22,25 1|1:44:22,22 +chr20 864080 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=845685;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:30:9,21 1|1:13:6,7 1|1:24:12,12 +chr20 865132 . AAGCAGAAAAGC A 60 . QNAME=cluster23_scaffold_2;QSTART=24827970;QSTRAND=-;GCPCT=41;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.692216 GT:DP:AD ./.:15:7,8 ./.:37:20,17 0|1:30:8,22 +chr20 865868 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=847474;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:46:24,22 0|1:43:23,20 ./.:22:6,16 +chr20 866330 . A AC 60 . QNAME=HG002-S9-H1-000001F;QSTART=847937;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:26:10,16 0|1:32:13,19 ./.:40:18,22 +chr20 866340 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=847947;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:35:15,20 0|1:15:5,10 ./.:28:19,9 +chr20 866636 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=848243;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:28:10,18 0|1:42:22,20 ./.:39:23,16 +chr20 866712 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=848319;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:33:10,23 0|1:38:25,13 ./.:42:23,19 +chr20 866777 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848384;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:34:11,23 0|1:45:24,21 ./.:24:15,9 +chr20 866852 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=848459;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:28:20,8 0|1:18:10,8 ./.:26:12,14 +chr20 867420 . GTA G 60 . QNAME=cluster19_000000F;QSTART=24890672;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD ./.:23:6,17 1|0:33:19,14 ./.:40:22,18 +chr20 867422 . ATATG A 60 . QNAME=cluster23_scaffold_2;QSTART=24825691;QSTRAND=-;GCPCT=20;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.760964 GT:DP:AD ./.:24:8,16 ./.:37:23,14 0|1:25:13,12 +chr20 867424 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=823571;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:37:14,23 ./.:27:5,22 1|0:41:18,23 +chr20 867424 . ATG A 60 . QNAME=cluster19_000000F;QSTART=831709;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD ./.:14:9,5 0|1:36:25,11 ./.:24:9,15 +chr20 867469 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849076;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:27:19,8 1|1:24:11,13 0|1:13:6,7 +chr20 867469 . T TGA 60 . QNAME=HG002-S9-H2-000001F;QSTART=823617;QSTRAND=+;GCPCT=33;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 0|1:31:18,13 ./.:31:6,25 1|0:16:8,8 +chr20 867728 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=849335;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:19:12,7 0|1:41:23,18 ./.:37:24,13 +chr20 867974 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824123;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:19:7,12 1|0:30:18,12 1|1:39:22,17 +chr20 868254 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=849861;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:10:5,5 1|1:44:22,22 1|1:42:21,21 +chr20 868526 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=850133;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:37:15,22 0|1:45:23,22 ./.:25:16,9 +chr20 868606 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850213;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:14,16 0|1:48:23,25 ./.:40:22,18 +chr20 868745 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=824894;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:24:9,15 1|0:44:19,25 1|1:29:23,6 +chr20 868950 . C CT 60 . QNAME=HG002-S9-H1-000001F;QSTART=850558;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:30:5,25 0|1:28:12,16 ./.:24:19,5 +chr20 868955 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=825105;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD 0|1:37:21,16 ./.:31:17,14 ./.:28:18,10 +chr20 868956 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=850564;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:32:24,8 1|1:34:21,13 1|1:13:7,6 +chr20 869010 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=850618;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:24:15,9 1|1:37:12,25 1|1:42:18,24 +chr20 869733 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=851341;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:35:13,22 1|1:19:6,13 1|1:31:17,14 +chr20 869777 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=851385;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:29:24,5 1|1:29:17,12 1|1:33:12,21 +chr20 871966 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828114;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:27:6,21 1|0:27:19,8 1|1:21:7,14 +chr20 871969 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=828117;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:23,8 1|0:28:6,22 1|1:38:23,15 +chr20 872450 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=828598;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:32:19,13 1|0:24:15,9 1|1:17:10,7 +chr20 872792 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=854400;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:39:19,20 1|1:24:13,11 1|1:32:17,15 +chr20 873491 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855099;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:27:19,8 0|1:31:25,6 ./.:40:15,25 +chr20 873608 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=855216;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:41:22,19 0|1:25:19,6 ./.:35:25,10 +chr20 873920 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855528;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:17:7,10 0|1:29:19,10 0|1:18:13,5 +chr20 873956 . C A 60 . QNAME=cluster19_000000F;QSTART=24884138;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:37:17,20 1|0:31:24,7 ./.:38:18,20 +chr20 874038 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=855646;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:36:22,14 0|1:33:12,21 0|1:18:6,12 +chr20 874111 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=855719;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:25:16,9 0|1:25:13,12 0|1:25:20,5 +chr20 874297 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=855905;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:22:15,7 0|1:34:13,21 0|1:32:11,21 +chr20 874696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=856304;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:21:15,6 0|1:32:25,7 0|1:23:13,10 +chr20 875035 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=856644;QSTRAND=+;GCPCT=50;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 1|0:40:24,16 0|1:42:17,25 0|1:29:6,23 +chr20 875568 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857175;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:46:22,24 0|1:14:9,5 ./.:24:5,19 +chr20 875568 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24817550;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD ./.:24:13,11 ./.:19:14,5 0|1:27:17,10 +chr20 875920 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=857527;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:20,19 0|1:19:11,8 0|1:17:7,10 +chr20 876104 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=857711;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:23:12,11 0|1:38:24,14 0|1:45:21,24 +chr20 876144 . C CA 60 . QNAME=cluster23_scaffold_3;QSTART=24833309;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:30:9,21 ./.:28:19,9 1|0:16:7,9 +chr20 876144 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=857752;QSTRAND=+;GCPCT=33;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD 1|0:32:13,19 0|1:22:14,8 0|1:24:8,16 +chr20 876194 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=857799;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:37:24,13 0|1:36:25,11 0|1:42:22,20 +chr20 876734 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24816386;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:46:24,22 ./.:24:14,10 0|1:24:18,6 +chr20 878979 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24814141;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:21:13,8 ./.:18:5,13 0|1:34:17,17 +chr20 879508 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=861113;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:15:7,8 0|1:27:17,10 ./.:21:10,11 +chr20 880111 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=861716;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:18:9,9 0|1:44:20,24 ./.:37:17,20 +chr20 880159 . G A 60 . QNAME=cluster19_000000F;QSTART=24877935;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:41:23,18 1|0:33:20,13 ./.:37:24,13 +chr20 880302 . A AG 60 . QNAME=HG002-S9-H1-000001F;QSTART=861908;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 1|0:30:8,22 0|1:35:10,25 ./.:28:18,10 +chr20 880463 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24812657;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:29:14,15 ./.:34:23,11 0|1:19:11,8 +chr20 880587 . C CA 60 . QNAME=cluster19_000000F;QSTART=24877506;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0.5 GT:DP:AD ./.:19:13,6 1|0:23:17,6 ./.:14:5,9 +chr20 880587 . CA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862194;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:26:16,10 ./.:25:17,8 ./.:25:9,16 +chr20 880743 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=862348;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:16:9,7 0|1:13:8,5 0|1:33:10,23 +chr20 881100 . C G 60 . QNAME=cluster23_scaffold_2;QSTART=24812020;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:46:21,25 ./.:18:5,13 0|1:28:9,19 +chr20 881114 . G GGGAA 60 . QNAME=cluster23_scaffold_2;QSTART=24812002;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.485475 GT:DP:AD ./.:25:20,5 ./.:32:11,21 0|1:27:5,22 +chr20 881524 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24811592;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:16,15 ./.:35:20,15 0|1:30:11,19 +chr20 881561 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24811555;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:29:17,12 ./.:30:15,15 0|1:40:17,23 +chr20 882074 . T G 60 . QNAME=cluster23_scaffold_2;QSTART=24811042;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:35:24,11 ./.:39:20,19 0|1:47:22,25 +chr20 882180 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24810936;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:11:5,6 ./.:24:14,10 0|1:40:22,18 +chr20 882348 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=863953;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:15,24 0|1:19:10,9 ./.:31:9,22 +chr20 882505 . C CTAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=864111;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.75 GT:DP:AD 1|0:37:22,15 0|1:39:15,24 ./.:18:5,13 +chr20 882628 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864236;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:45:25,20 0|1:36:17,19 ./.:28:8,20 +chr20 882865 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=864473;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:32:23,9 0|1:32:10,22 ./.:30:6,24 +chr20 883063 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864671;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:39:20,19 0|1:31:23,8 0|1:28:20,8 +chr20 883101 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=864709;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:39:18,21 0|1:29:17,12 ./.:31:17,14 +chr20 883203 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24809913;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:24:19,5 ./.:23:16,7 0|1:26:21,5 +chr20 883230 . C T 60 . QNAME=cluster19_000000F;QSTART=24874863;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:27:13,14 1|0:30:25,5 ./.:13:5,8 +chr20 883431 . T C 60 . QNAME=cluster23_scaffold_2;QSTART=24809685;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:39:23,16 ./.:20:8,12 0|1:19:7,12 +chr20 883556 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=865164;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:15:10,5 0|1:42:21,21 ./.:32:13,19 +chr20 883658 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24809458;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:25,12 ./.:33:10,23 0|1:41:18,23 +chr20 883812 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=865420;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:42:17,25 0|1:16:7,9 0|1:28:23,5 +chr20 883869 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24809247;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:31:19,12 ./.:11:5,6 0|1:28:23,5 +chr20 883997 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865605;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:19:14,5 0|1:41:21,20 0|1:28:11,17 +chr20 884017 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=865625;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:10,24 0|1:25:6,19 0|1:34:17,17 +chr20 884411 . G C 60 . QNAME=cluster23_scaffold_2;QSTART=24808705;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:17:8,9 ./.:18:5,13 0|1:46:25,21 +chr20 884723 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866331;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:42:24,18 0|1:26:9,17 0|1:37:19,18 +chr20 884894 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24808222;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:26:21,5 ./.:37:19,18 0|1:37:21,16 +chr20 885021 . TC T 60 . QNAME=HG002-S9-H1-000001F;QSTART=866630;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|0:34:22,12 0|1:38:21,17 ./.:20:11,9 +chr20 885587 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=867194;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:25:12,13 0|1:18:8,10 ./.:17:9,8 +chr20 885689 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867296;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:16,16 0|1:23:9,14 ./.:36:16,20 +chr20 885707 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=867314;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:19,8 0|1:31:7,24 ./.:28:16,12 +chr20 885722 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=867329;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:18:6,12 0|1:15:8,7 ./.:16:11,5 +chr20 886137 . AG A 60 . QNAME=cluster23_scaffold_2;QSTART=24806979;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:24:14,10 ./.:36:13,23 0|1:43:18,25 +chr20 886620 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=868227;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:5,22 0|1:36:19,17 ./.:33:19,14 +chr20 886681 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=868288;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:23,13 0|1:41:19,22 0|1:42:21,21 +chr20 886694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=868301;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:44:23,21 0|1:19:10,9 ./.:15:6,9 +chr20 887636 . CT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=843785;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:15:8,7 1|0:47:23,24 ./.:35:11,24 +chr20 887636 . CTTT C 60 . QNAME=cluster23_scaffold_2;QSTART=24805481;QSTRAND=-;GCPCT=25;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.405639 GT:DP:AD ./.:11:6,5 ./.:32:21,11 0|1:23:8,15 +chr20 887636 . CTTTT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869244;QSTRAND=+;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.360964 GT:DP:AD 1|0:29:19,10 0|1:31:20,11 ./.:15:10,5 +chr20 887887 . G GAGGA 60 . QNAME=cluster23_scaffold_2;QSTART=24805229;QSTRAND=-;GCPCT=60;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.485475 GT:DP:AD ./.:42:22,20 ./.:32:10,22 0|1:22:11,11 +chr20 887996 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=869599;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:35:16,19 0|1:29:24,5 0|1:37:12,25 +chr20 888753 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=870356;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:23:14,9 0|1:39:21,18 ./.:34:22,12 +chr20 889503 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=871106;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:20:7,13 0|1:34:10,24 0|1:42:17,25 +chr20 889671 . C G 60 . QNAME=cluster23_scaffold_3;QSTART=24819782;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:10,22 ./.:39:14,25 1|0:22:9,13 +chr20 890514 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872117;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:32:19,13 0|1:29:18,11 ./.:35:18,17 +chr20 890614 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=872217;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:46:23,23 ./.:40:15,25 ./.:30:18,12 +chr20 891187 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=872790;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:34:9,25 ./.:28:16,12 ./.:32:21,11 +chr20 891480 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=873083;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:39:15,24 ./.:27:22,5 ./.:35:24,11 +chr20 891653 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24801463;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:18:9,9 ./.:31:13,18 0|1:36:11,25 +chr20 892108 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=873711;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:31:15,16 ./.:48:24,24 ./.:44:24,20 +chr20 892511 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=874114;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:32:21,11 ./.:28:15,13 ./.:26:11,15 +chr20 892634 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=874237;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:25:20,5 ./.:29:10,19 ./.:33:12,21 +chr20 892840 . C T 60 . QNAME=cluster19_000000F;QSTART=24865254;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:42:19,23 1|0:35:10,25 ./.:32:8,24 +chr20 893106 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=874709;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:13:8,5 ./.:32:21,11 ./.:24:9,15 +chr20 893464 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=875067;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:40:15,25 ./.:28:23,5 ./.:13:7,6 +chr20 893483 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=875086;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 1|0:36:25,11 ./.:28:18,10 ./.:35:25,10 +chr20 894385 . C T 60 . QNAME=cluster19_000000F;QSTART=24863709;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:37:22,15 1|0:28:11,17 ./.:40:24,16 +chr20 895490 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=877093;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:25,17 ./.:39:25,14 ./.:39:24,15 +chr20 895600 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877203;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:27:15,12 ./.:12:6,6 ./.:40:20,20 +chr20 896059 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=877662;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:18:6,12 ./.:19:10,9 ./.:29:14,15 +chr20 896562 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878165;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:43:23,20 ./.:20:12,8 ./.:47:22,25 +chr20 896997 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=878600;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:13,24 ./.:29:11,18 ./.:32:18,14 +chr20 899093 . T C 60 . QNAME=cluster19_000000F;QSTART=24859001;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:32:23,9 1|0:28:6,22 ./.:34:9,25 +chr20 899180 . T A 60 . QNAME=cluster19_000000F;QSTART=24858914;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:25:6,19 1|0:32:23,9 ./.:20:11,9 +chr20 899195 . C G 60 . QNAME=cluster19_000000F;QSTART=24858899;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:19:11,8 1|0:29:10,19 ./.:32:19,13 +chr20 899251 . AT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=880855;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:36:11,25 ./.:13:5,8 ./.:35:24,11 +chr20 899252 . T A 60 . QNAME=cluster19_000000F;QSTART=24858842;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:35:16,19 1|0:28:8,20 ./.:39:22,17 +chr20 899447 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=881049;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD 1|1:31:22,9 1|1:30:25,5 1|1:16:8,8 +chr20 899533 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=855679;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:32:23,9 ./.:16:8,8 ./.:40:17,23 +chr20 900321 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=856467;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:36:19,17 ./.:13:5,8 ./.:35:13,22 +chr20 900721 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=856867;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:31:25,6 ./.:36:25,11 ./.:36:25,11 +chr20 900932 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857078;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:22:7,15 ./.:37:13,24 ./.:32:10,22 +chr20 900977 . T A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857123;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:29:13,16 ./.:22:5,17 ./.:21:8,13 +chr20 901001 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=857147;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:24:7,17 ./.:46:21,25 ./.:37:25,12 +chr20 901060 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=857206;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:48:25,23 ./.:33:24,9 ./.:18:12,6 +chr20 901437 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=857583;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:32:13,19 ./.:45:21,24 ./.:37:13,24 +chr20 901786 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=857932;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:41:16,25 0|1:19:9,10 ./.:38:24,14 +chr20 902160 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858306;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:31:10,21 ./.:19:7,12 ./.:17:10,7 +chr20 902357 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=858503;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:33:16,17 ./.:33:21,12 ./.:32:25,7 +chr20 902728 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=858874;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:11:5,6 ./.:32:19,13 ./.:32:12,20 +chr20 903001 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859147;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:33:12,21 ./.:15:10,5 ./.:25:16,9 +chr20 903427 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=859573;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:22:17,5 ./.:28:15,13 ./.:27:20,7 +chr20 903489 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=859635;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:34:12,22 ./.:38:14,24 ./.:31:18,13 +chr20 904502 . A AC 60 . QNAME=HG002-S9-H2-000001F;QSTART=860649;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:27:6,21 ./.:26:19,7 ./.:30:12,18 +chr20 905359 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861506;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:25:14,11 ./.:32:8,24 ./.:15:5,10 +chr20 905407 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=861554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:42:17,25 ./.:30:17,13 ./.:29:18,11 +chr20 905736 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=861883;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:24:8,16 ./.:29:22,7 ./.:23:6,17 +chr20 906213 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862360;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:31:14,17 ./.:43:20,23 ./.:36:23,13 +chr20 906268 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=862415;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:17:7,10 ./.:25:17,8 ./.:21:7,14 +chr20 906812 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=862959;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:33:11,22 ./.:30:9,21 ./.:21:6,15 +chr20 906878 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863025;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:28:23,5 ./.:24:7,17 ./.:22:17,5 +chr20 907157 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=863304;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:42:25,17 ./.:40:15,25 ./.:29:18,11 +chr20 907880 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=864027;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:37:17,20 ./.:37:15,22 0|1:26:15,11 +chr20 908674 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=864821;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:19,21 ./.:23:12,11 0|1:36:13,23 +chr20 909226 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24783890;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:25:14,11 ./.:13:5,8 0|1:35:20,15 +chr20 909261 . C A 60 . QNAME=cluster19_000000F;QSTART=873540;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:32:9,23 0|1:24:11,13 ./.:36:11,25 +chr20 909371 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24783745;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:22:16,6 ./.:29:15,14 0|1:44:22,22 +chr20 909453 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=891055;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:37:14,23 ./.:33:23,10 ./.:39:14,25 +chr20 909635 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24783481;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:36:23,13 ./.:30:6,24 0|1:39:23,16 +chr20 909706 . G C 60 . QNAME=cluster19_000000F;QSTART=873985;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:21:5,16 0|1:46:21,25 ./.:38:21,17 +chr20 911795 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=893397;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:23:17,6 ./.:27:5,22 ./.:36:24,12 +chr20 911823 . AGACAGAGAGAGGGAGAGAGG A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893426;QSTRAND=+;GCPCT=57;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.610847 GT:DP:AD 1|0:26:6,20 ./.:21:13,8 ./.:30:18,12 +chr20 912080 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=893662;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:19:8,11 ./.:25:5,20 ./.:41:23,18 +chr20 912305 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=893887;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:13:8,5 ./.:28:13,15 ./.:29:13,16 +chr20 913482 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=895064;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:32:20,12 ./.:31:8,23 ./.:25:12,13 +chr20 914079 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895661;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:16:10,6 1|0:24:7,17 ./.:25:11,14 +chr20 914238 . A G 60 . QNAME=cluster19_000000F;QSTART=24843856;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:45:23,22 1|0:23:13,10 ./.:25:13,12 +chr20 914324 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=895906;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:37:14,23 1|1:32:18,14 1|0:24:14,10 +chr20 914682 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=896264;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:35:20,15 1|0:34:14,20 1|1:27:15,12 +chr20 914775 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=870922;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:25:16,9 ./.:27:10,17 1|0:17:9,8 +chr20 914780 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=896362;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:36:18,18 1|0:38:24,14 0|1:32:20,12 +chr20 914814 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=870961;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:26:15,11 ./.:16:6,10 1|0:29:19,10 +chr20 915350 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896932;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:33:10,23 ./.:36:22,14 ./.:28:14,14 +chr20 915369 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=896951;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:37:14,23 1|0:14:8,6 1|0:18:5,13 +chr20 915656 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=897238;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|1:12:6,6 1|0:30:22,8 1|1:26:12,14 +chr20 916110 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=872257;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:23:8,15 ./.:40:15,25 ./.:35:15,20 +chr20 916419 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=898001;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:37:17,20 1|1:20:5,15 1|1:28:5,23 +chr20 916452 . A C 60 . QNAME=cluster19_000000F;QSTART=880731;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:21,13 0|1:34:19,15 ./.:38:22,16 +chr20 916852 . C T 60 . QNAME=cluster19_000000F;QSTART=881131;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:29:23,6 0|1:28:5,23 ./.:29:18,11 +chr20 916971 . C T 60 . QNAME=cluster19_000000F;QSTART=881250;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:17,20 0|1:30:20,10 ./.:23:6,17 +chr20 917534 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=873681;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:22:11,11 ./.:23:8,15 ./.:27:14,13 +chr20 917575 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=899157;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:39:21,18 1|1:24:7,17 1|1:33:16,17 +chr20 917906 . T G 60 . QNAME=cluster19_000000F;QSTART=882185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD ./.:20:9,11 0|1:27:14,13 ./.:19:9,10 +chr20 918736 . G A 60 . QNAME=cluster19_000000F;QSTART=883015;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:41:25,16 0|1:24:8,16 ./.:28:14,14 +chr20 919146 . CTCTT C 60 . QNAME=cluster19_000000F;QSTART=883426;QSTRAND=+;GCPCT=40;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.485475 GT:DP:AD ./.:46:22,24 0|1:34:25,9 ./.:21:9,12 +chr20 919167 . C CTT 60 . QNAME=cluster23_scaffold_2;QSTART=24773947;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.459148 GT:DP:AD ./.:33:9,24 ./.:13:7,6 0|1:28:13,15 +chr20 919371 . G C 60 . QNAME=cluster19_000000F;QSTART=883646;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:38:18,20 0|1:32:8,24 ./.:31:9,22 +chr20 919990 . TG T 60 . QNAME=cluster19_000000F;QSTART=24838104;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:32:19,13 1|0:35:22,13 ./.:32:24,8 +chr20 919994 . T C 60 . QNAME=cluster19_000000F;QSTART=24838101;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:39:25,14 1|0:35:12,23 ./.:46:24,22 +chr20 920055 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=901638;QSTRAND=+;GCPCT=50;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD 1|1:13:7,6 1|1:23:8,15 1|1:29:18,11 +chr20 920188 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901771;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:11,21 1|0:41:25,16 ./.:24:8,16 +chr20 920292 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901875;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:23:17,6 1|0:20:9,11 ./.:22:13,9 +chr20 920391 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=901974;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:16:10,6 ./.:25:12,13 ./.:21:11,10 +chr20 921033 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=902616;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:27:10,17 1|1:38:16,22 1|1:37:15,22 +chr20 921239 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=902822;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:38:20,18 1|1:16:6,10 1|1:11:6,5 +chr20 921288 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=902871;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:20:5,15 1|0:38:17,21 1|1:42:21,21 +chr20 921359 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877507;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:17:8,9 ./.:21:14,7 ./.:35:10,25 +chr20 921417 . T G 60 . QNAME=HG002-S9-H2-000001F;QSTART=877565;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:18:10,8 1|0:32:23,9 0|1:32:13,19 +chr20 921417 . T TG 60 . QNAME=cluster19_000000F;QSTART=885694;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD ./.:38:17,21 0|1:28:7,21 ./.:31:23,8 +chr20 921667 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=903250;QSTRAND=+;GCPCT=100;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:31:18,13 0|1:29:23,6 0|1:38:21,17 +chr20 922254 . C G 60 . QNAME=cluster19_000000F;QSTART=886531;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:13,21 0|1:18:6,12 0|1:39:24,15 +chr20 922377 . G A 60 . QNAME=cluster19_000000F;QSTART=886654;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:31:8,23 0|1:19:8,11 0|1:34:19,15 +chr20 923331 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769781;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD ./.:25:18,7 ./.:13:6,7 0|1:47:22,25 +chr20 923875 . C CA 60 . QNAME=cluster23_scaffold_2;QSTART=24769236;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:33:23,10 ./.:45:20,25 0|1:24:16,8 +chr20 924499 . C T 60 . QNAME=cluster19_000000F;QSTART=888776;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:23:12,11 0|1:38:17,21 0|1:19:12,7 +chr20 925913 . CA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=882062;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 0|1:47:22,25 ./.:31:16,15 ./.:32:24,8 +chr20 928807 . G C 60 . QNAME=cluster19_000000F;QSTART=893084;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:27:21,6 0|1:34:22,12 0|1:26:19,7 +chr20 929128 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=885275;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:48:24,24 1|1:19:11,8 0|1:38:13,25 +chr20 929177 . T C 60 . QNAME=cluster19_000000F;QSTART=893454;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:19,22 0|1:37:18,19 ./.:44:20,24 +chr20 929220 . A T 60 . QNAME=cluster19_000000F;QSTART=893497;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:38:18,20 0|1:18:13,5 ./.:25:6,19 +chr20 929302 . TTA T 60 . QNAME=cluster19_000000F;QSTART=24828792;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0.459148 GT:DP:AD ./.:34:24,10 1|0:49:25,24 ./.:12:6,6 +chr20 929302 . TTATGG T 60 . QNAME=cluster19_000000F;QSTART=893580;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.729574 GT:DP:AD ./.:36:17,19 0|1:19:14,5 ./.:20:15,5 +chr20 929491 . A C 60 . QNAME=cluster19_000000F;QSTART=24828605;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:22:9,13 1|1:29:17,12 ./.:24:9,15 +chr20 929623 . T C 60 . QNAME=cluster19_000000F;QSTART=24828473;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:25:14,11 1|1:38:18,20 ./.:44:24,20 +chr20 929701 . T G 60 . QNAME=cluster19_000000F;QSTART=24828395;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:11,25 1|1:25:6,19 ./.:36:11,25 +chr20 931616 . C T 60 . QNAME=cluster19_000000F;QSTART=24826480;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:40:22,18 1|1:18:10,8 ./.:33:11,22 +chr20 931983 . A G 60 . QNAME=cluster19_000000F;QSTART=24826113;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:39:21,18 1|1:16:8,8 ./.:26:14,12 +chr20 932022 . T C 60 . QNAME=cluster19_000000F;QSTART=24826074;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:30:21,9 1|1:36:17,19 ./.:45:24,21 +chr20 932357 . T C 60 . QNAME=cluster19_000000F;QSTART=24825739;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:27:7,20 1|1:42:18,24 ./.:20:11,9 +chr20 932610 . G A 60 . QNAME=cluster19_000000F;QSTART=24825486;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:29:10,19 1|1:30:21,9 ./.:21:15,6 +chr20 932660 . A AT 60 . QNAME=cluster19_000000F;QSTART=24825435;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:31:19,12 1|1:47:24,23 ./.:18:9,9 +chr20 932698 . G A 60 . QNAME=cluster19_000000F;QSTART=24825397;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:38:17,21 1|1:33:10,23 ./.:34:13,21 +chr20 932824 . G A 60 . QNAME=cluster19_000000F;QSTART=24825271;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:37:13,24 1|1:26:6,20 ./.:30:16,14 +chr20 933093 . C T 60 . QNAME=cluster19_000000F;QSTART=24825002;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:33:10,23 1|1:31:6,25 ./.:21:16,5 +chr20 933764 . G T 60 . QNAME=cluster19_000000F;QSTART=24824331;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:43:25,18 1|1:42:19,23 ./.:23:5,18 +chr20 933777 . T G 60 . QNAME=cluster19_000000F;QSTART=24824318;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:28:13,15 1|1:38:15,23 ./.:29:18,11 +chr20 934006 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=890153;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:22,9 ./.:43:25,18 ./.:43:18,25 +chr20 934616 . G A 60 . QNAME=cluster19_000000F;QSTART=24823479;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:23:17,6 1|1:33:11,22 ./.:24:8,16 +chr20 935220 . C A 60 . QNAME=cluster19_000000F;QSTART=24822875;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:29:24,5 1|1:20:14,6 ./.:23:7,16 +chr20 935920 . C T 60 . QNAME=cluster23_scaffold_2;QSTART=24757191;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:35:24,11 ./.:30:18,12 0|1:40:18,22 +chr20 936160 . A C 60 . QNAME=cluster19_000000F;QSTART=24821935;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:41:24,17 1|0:39:16,23 ./.:41:21,20 +chr20 937152 . A T 60 . QNAME=cluster19_000000F;QSTART=24820943;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:31:7,24 1|0:46:22,24 ./.:40:25,15 +chr20 937174 . C T 60 . QNAME=cluster19_000000F;QSTART=24820921;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:33:11,22 1|0:17:6,11 ./.:27:16,11 +chr20 937837 . T A 60 . QNAME=cluster19_000000F;QSTART=24820258;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD ./.:23:10,13 1|0:33:23,10 ./.:43:18,25 +chr20 937941 . A G 60 . QNAME=cluster19_000000F;QSTART=24820154;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:31:11,20 1|0:25:19,6 ./.:28:19,9 +chr20 938380 . G A 60 . QNAME=cluster19_000000F;QSTART=24819715;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:16,18 1|0:34:20,14 ./.:32:9,23 +chr20 940109 . A G 60 . QNAME=cluster19_000000F;QSTART=24817986;QSTRAND=-;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:40:20,20 1|1:31:16,15 ./.:25:13,12 +chr20 940207 . G A 60 . QNAME=cluster19_000000F;QSTART=24817888;QSTRAND=-;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:31:12,19 1|1:15:10,5 ./.:23:8,15 +chr20 941328 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=897475;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:27:9,18 1|1:22:16,6 0|1:31:10,21 +chr20 942095 . C CA 60 . QNAME=cluster19_000000F;QSTART=906369;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:26:11,15 0|1:34:20,14 ./.:30:11,19 +chr20 942273 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=898421;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD 0|1:33:8,25 1|1:34:12,22 0|1:21:11,10 +chr20 942277 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=898425;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:17:8,9 1|1:37:22,15 0|1:31:20,11 +chr20 942358 . C T 60 . QNAME=cluster19_000000F;QSTART=24815736;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:34:10,24 1|1:47:22,25 0|1:26:14,12 +chr20 942424 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=898572;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 0|1:25:9,16 ./.:26:13,13 ./.:20:9,11 +chr20 942563 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898711;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:32:18,14 ./.:28:20,8 ./.:21:14,7 +chr20 942659 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=898807;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:21:12,9 1|1:37:24,13 0|1:32:13,19 +chr20 943015 . G A 60 . QNAME=cluster19_000000F;QSTART=24815079;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:36:11,25 1|1:39:16,23 0|1:31:16,15 +chr20 943016 . C A 60 . QNAME=cluster19_000000F;QSTART=24815078;QSTRAND=-;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:28:16,12 1|1:14:8,6 0|1:46:24,22 +chr20 943950 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900098;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:42:23,19 ./.:33:14,19 ./.:27:8,19 +chr20 943984 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=900132;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:34:25,9 1|1:32:17,15 0|1:41:18,23 +chr20 944018 . GCT G 60 . QNAME=cluster19_000000F;QSTART=24814076;QSTRAND=-;GCPCT=66;GTCNT=1,0,1,1;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.792481 GT:DP:AD ./.:14:8,6 1|1:21:10,11 0|1:21:13,8 +chr20 944028 . TC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=900177;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 0|1:27:18,9 ./.:11:6,5 ./.:21:8,13 +chr20 944029 . C CTT 60 . QNAME=cluster23_scaffold_3;QSTART=24765421;QSTRAND=-;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.459148 GT:DP:AD ./.:39:18,21 ./.:40:25,15 1|0:42:25,17 +chr20 944093 . C T 60 . QNAME=cluster23_scaffold_3;QSTART=24765357;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:27:18,9 ./.:36:21,15 1|0:25:16,9 +chr20 944094 . A G 60 . QNAME=cluster23_scaffold_3;QSTART=24765356;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:13:6,7 ./.:19:10,9 1|0:26:15,11 +chr20 945682 . T C 60 . QNAME=cluster19_000000F;QSTART=909955;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:25:7,18 0|1:45:20,25 0|1:22:5,17 +chr20 945711 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=901858;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:19,21 0|1:27:13,14 0|1:41:22,19 +chr20 945754 . G A 60 . QNAME=cluster19_000000F;QSTART=910027;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD ./.:34:17,17 0|1:33:25,8 0|1:34:10,24 +chr20 945942 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=902089;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:31:8,23 0|1:15:8,7 0|1:27:13,14 +chr20 946505 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=928088;QSTRAND=+;GCPCT=0;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:25:10,15 0|1:27:16,11 0|1:30:10,20 +chr20 946814 . A C 60 . QNAME=HG002-S9-H2-000001F;QSTART=902961;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:18:13,5 ./.:44:22,22 1|0:32:24,8 +chr20 946899 . C G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903046;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:35:16,19 ./.:30:7,23 1|0:22:6,16 +chr20 947202 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=903349;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:36:21,15 ./.:18:7,11 1|0:26:17,9 +chr20 947218 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=903365;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:20:12,8 ./.:31:14,17 1|0:38:18,20 +chr20 947585 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903732;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:23:16,7 ./.:18:7,11 1|0:30:23,7 +chr20 947624 . G C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903771;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:30:20,10 ./.:32:25,7 1|0:47:25,22 +chr20 947782 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=903929;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:35:15,20 ./.:26:7,19 1|0:28:23,5 +chr20 947795 . A G 60 . QNAME=HG002-S9-H2-000001F;QSTART=903942;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:38:20,18 ./.:14:9,5 1|0:26:7,19 +chr20 947914 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904061;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:22:8,14 ./.:36:16,20 1|0:20:5,15 +chr20 948357 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=904504;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:27:13,14 ./.:29:22,7 1|0:34:10,24 +chr20 948492 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=904639;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:16:8,8 ./.:33:24,9 1|0:19:9,10 +chr20 948493 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=904640;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:29:19,10 ./.:31:17,14 1|0:13:8,5 +chr20 948861 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=905008;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:36:19,17 ./.:37:19,18 1|0:33:23,10 +chr20 949016 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=905163;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 0|1:27:20,7 ./.:32:13,19 1|0:24:18,6 +chr20 949377 . GA G 60 . QNAME=HG002-S9-H2-000001F;QSTART=905525;QSTRAND=+;GCPCT=50;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.5 GT:DP:AD 0|1:45:20,25 ./.:20:15,5 1|0:15:7,8 +chr20 949837 . C T 60 . QNAME=cluster19_000000F;QSTART=914110;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD ./.:12:6,6 0|1:41:23,18 0|1:24:15,9 +chr20 949917 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905960;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:40:25,15 ./.:31:9,22 1|0:38:18,20 +chr20 950840 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=906883;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:40:18,22 ./.:15:5,10 1|0:25:5,20 +chr20 950981 . A AAAATAAAT 60 . QNAME=HG002-S9-H2-000001F;QSTART=907025;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.382102 GT:DP:AD 0|1:40:25,15 ./.:30:22,8 1|0:32:9,23 +chr20 951023 . A AAAC 60 . QNAME=HG002-S9-H2-000001F;QSTART=907075;QSTRAND=+;GCPCT=25;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.405639 GT:DP:AD 0|1:25:7,18 ./.:29:16,13 1|0:40:19,21 +chr20 951100 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907154;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:42:17,25 ./.:24:10,14 1|0:19:11,8 +chr20 951130 . A ATT 60 . QNAME=HG002-S9-H1-000001F;QSTART=932714;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.459148 GT:DP:AD 1|0:37:24,13 ./.:38:13,25 ./.:20:6,14 +chr20 951130 . A ATTT 60 . QNAME=cluster19_000000F;QSTART=915404;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.405639 GT:DP:AD ./.:39:17,22 0|1:40:15,25 ./.:36:18,18 +chr20 951130 . A ATTTTT 60 . QNAME=cluster23_scaffold_2;QSTART=24741977;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.325011 GT:DP:AD ./.:15:9,6 ./.:31:25,6 0|1:24:9,15 +chr20 951130 . ATTTTTTTTTTTT A 60 . QNAME=cluster19_000000F;QSTART=24806966;QSTRAND=-;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.195622 GT:DP:AD ./.:47:24,23 1|0:48:24,24 1|0:24:7,17 +chr20 951130 . ATTTTTTTTTTTTT A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907185;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.185616 GT:DP:AD 0|1:32:18,14 ./.:34:12,22 ./.:38:18,20 +chr20 951172 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=907213;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:36:21,15 ./.:31:9,22 1|0:32:8,24 +chr20 951188 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=907229;QSTRAND=+;GCPCT=100;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:20:13,7 ./.:27:6,21 1|0:24:7,17 +chr20 951376 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932961;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:29:20,9 0|1:42:23,19 1|1:31:6,25 +chr20 951397 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=932982;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:21,18 ./.:37:18,19 ./.:28:22,6 +chr20 951428 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933013;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:32:10,22 ./.:31:8,23 ./.:41:25,16 +chr20 951612 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933197;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:15,19 ./.:32:10,22 ./.:31:11,20 +chr20 951687 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=933272;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:39:18,21 ./.:29:15,14 ./.:28:8,20 +chr20 951756 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=933341;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:30:25,5 ./.:28:13,15 ./.:36:25,11 +chr20 951868 . C T 60 . QNAME=cluster19_000000F;QSTART=916144;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:15:6,9 0|1:25:11,14 1|1:27:19,8 +chr20 951868 . CGT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=907910;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 0|1:30:13,17 ./.:24:14,10 ./.:37:18,19 +chr20 951870 . T C 60 . QNAME=cluster19_000000F;QSTART=916146;QSTRAND=+;GCPCT=0;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,3,0,0;LCR=0 GT:DP:AD ./.:19:12,7 0|1:15:8,7 1|1:34:25,9 +chr20 951975 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908014;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 0|1:20:8,12 0|1:29:24,5 1|1:34:23,11 +chr20 952317 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=933902;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:22:12,10 ./.:42:23,19 ./.:27:5,22 +chr20 952372 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=933957;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:34:13,21 ./.:30:11,19 ./.:38:15,23 +chr20 952391 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=908430;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 0|1:17:9,8 0|1:22:8,14 1|1:16:7,9 +chr20 952475 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=934060;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:30:10,20 ./.:26:18,8 ./.:27:8,19 +chr20 952558 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=908597;QSTRAND=+;GCPCT=0;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:21:16,5 0|1:40:25,15 1|1:47:24,23 +chr20 952594 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934179;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:25,16 ./.:17:8,9 ./.:38:13,25 +chr20 952909 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934494;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:35:14,21 ./.:33:24,9 ./.:12:7,5 +chr20 953115 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=909154;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:20:6,14 1|1:37:14,23 1|1:40:23,17 +chr20 953327 . GTTAT G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934913;QSTRAND=+;GCPCT=20;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.685475 GT:DP:AD 1|1:35:16,19 1|1:22:6,16 1|1:34:11,23 +chr20 953360 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=934941;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:31:24,7 ./.:31:6,25 ./.:20:12,8 +chr20 953456 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935037;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:37:17,20 ./.:29:8,21 ./.:39:20,19 +chr20 953490 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935071;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|1:32:19,13 1|1:30:21,9 1|1:30:7,23 +chr20 953507 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=935088;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:30:15,15 ./.:35:10,25 ./.:41:22,19 +chr20 953510 . A AT 60 . QNAME=HG002-S9-H2-000001F;QSTART=909546;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.5 GT:DP:AD 0|1:30:8,22 1|1:32:11,21 1|1:35:17,18 +chr20 953670 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=909706;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0 GT:DP:AD 0|1:37:24,13 1|1:17:5,12 0|1:31:21,10 +chr20 953787 . AC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=935369;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.5 GT:DP:AD 1|0:10:5,5 ./.:39:21,18 ./.:23:8,15 +chr20 953831 . T TC 60 . QNAME=HG002-S9-H1-000001F;QSTART=935412;QSTRAND=+;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,3,0;LCR=0.5 GT:DP:AD 1|0:26:15,11 ./.:23:13,10 ./.:32:21,11 +chr20 953857 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935438;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:12,17 ./.:33:15,18 ./.:36:16,20 +chr20 953954 . CG C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935536;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.5 GT:DP:AD 1|0:29:23,6 ./.:16:9,7 ./.:25:13,12 +chr20 953974 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=935554;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:43:20,23 ./.:21:16,5 ./.:38:22,16 +chr20 954305 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=935885;QSTRAND=+;GCPCT=0;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:30:8,22 1|1:25:7,18 0|1:17:12,5 +chr20 954418 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=910454;QSTRAND=+;GCPCT=100;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 0|1:27:12,15 1|1:37:16,21 0|1:44:20,24 +chr20 954610 . A G 60 . QNAME=cluster23_scaffold_2;QSTART=24738500;QSTRAND=-;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD ./.:24:6,18 ./.:32:12,20 0|1:39:25,14 +chr20 954684 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936264;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:35:19,16 1|1:26:21,5 1|1:25:6,19 +chr20 954686 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=936266;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:17:5,12 1|1:45:25,20 0|1:46:22,24 +chr20 954688 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=936268;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:24:11,13 ./.:44:23,21 ./.:47:22,25 +chr20 954692 . CAA C 60 . QNAME=HG002-S9-H1-000001F;QSTART=936273;QSTRAND=+;GCPCT=33;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.459148 GT:DP:AD 1|1:41:22,19 1|1:33:19,14 1|1:39:20,19 +chr20 955001 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=936579;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:44:22,22 ./.:28:12,16 ./.:42:21,21 +chr20 956302 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=937880;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:24:8,16 ./.:35:13,22 ./.:41:20,21 +chr20 956624 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=938202;QSTRAND=+;GCPCT=0;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:24:8,16 1|1:42:21,21 1|1:31:12,19 +chr20 956630 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938208;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:43:23,20 ./.:12:7,5 ./.:23:10,13 +chr20 957046 . C T 60 . QNAME=cluster19_000000F;QSTART=24801067;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD ./.:32:14,18 1|0:13:5,8 ./.:27:13,14 +chr20 957302 . G GTA 60 . QNAME=HG002-S9-H1-000001F;QSTART=938881;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 1|0:46:22,24 ./.:37:25,12 ./.:35:12,23 +chr20 957320 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938900;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:26:6,20 ./.:46:22,24 ./.:38:14,24 +chr20 957322 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938902;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:30:14,16 ./.:35:18,17 ./.:20:9,11 +chr20 957387 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=938967;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|1:24:19,5 1|1:39:19,20 0|1:43:21,22 +chr20 957642 . C CAAAAAA 60 . QNAME=HG002-S9-H1-000001F;QSTART=939223;QSTRAND=+;GCPCT=14;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.295836 GT:DP:AD 1|0:24:6,18 ./.:42:17,25 ./.:39:15,24 +chr20 957677 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=939264;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0.792481 GT:DP:AD 1|0:28:8,20 ./.:13:5,8 ./.:45:22,23 +chr20 958217 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=939805;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:26:21,5 ./.:39:21,18 ./.:21:12,9 +chr20 958300 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=939888;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:14,18 ./.:34:11,23 ./.:27:15,12 +chr20 958487 . T A 60 . QNAME=HG002-S9-H1-000001F;QSTART=940075;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:24:9,15 ./.:30:11,19 ./.:36:11,25 +chr20 958518 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940106;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:42:17,25 ./.:21:11,10 ./.:30:6,24 +chr20 958523 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940111;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:27:21,6 ./.:25:19,6 ./.:27:17,10 +chr20 958650 . G A 60 . QNAME=cluster23_scaffold_2;QSTART=24734462;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD ./.:46:24,22 ./.:23:7,16 0|1:28:5,23 +chr20 958880 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=940468;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:32:24,8 ./.:29:17,12 ./.:13:7,6 +chr20 959105 . GAGTGTGGTGGTGGGTGTGGGGC G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940694;QSTRAND=+;GCPCT=69;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.650626 GT:DP:AD 1|0:27:14,13 ./.:47:22,25 ./.:39:22,17 +chr20 959171 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940737;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:16:11,5 ./.:35:22,13 ./.:44:22,22 +chr20 959315 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=940881;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:36:19,17 ./.:35:22,13 ./.:27:8,19 +chr20 959563 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=941129;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:21:11,10 ./.:27:7,20 ./.:34:15,19 +chr20 959871 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=941437;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:48:23,25 ./.:23:14,9 ./.:18:9,9 +chr20 960669 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942235;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:20:5,15 ./.:30:20,10 ./.:50:25,25 +chr20 960776 . C A 60 . QNAME=HG002-S9-H1-000001F;QSTART=942342;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:33:18,15 ./.:22:5,17 ./.:41:17,24 +chr20 960856 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942422;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:39:22,17 ./.:42:21,21 ./.:25:5,20 +chr20 961022 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=942588;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:9,18 ./.:33:11,22 ./.:31:20,11 +chr20 961081 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=942647;QSTRAND=+;GCPCT=100;GTCNT=0,0,0,3;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:31:21,10 1|1:32:14,18 1|1:37:17,20 +chr20 961455 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943021;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:29:16,13 ./.:37:15,22 ./.:18:7,11 +chr20 961789 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=943355;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:40:19,21 ./.:30:15,15 ./.:36:20,16 +chr20 961809 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943375;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:30:18,12 ./.:22:7,15 ./.:15:6,9 +chr20 962027 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=943593;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:10:5,5 ./.:17:7,10 ./.:16:5,11 +chr20 962140 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=943706;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:22:8,14 ./.:20:9,11 ./.:37:20,17 +chr20 962739 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=944305;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:8,24 ./.:21:5,16 ./.:24:14,10 +chr20 962818 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=944384;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:18,23 ./.:32:25,7 ./.:28:13,15 +chr20 964006 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=945572;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:31:19,12 ./.:35:25,10 ./.:35:19,16 +chr20 964368 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=945934;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:45:23,22 ./.:32:14,18 ./.:43:24,19 +chr20 964461 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=946027;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:28:8,20 ./.:32:17,15 ./.:27:8,19 +chr20 964587 . T G 60 . QNAME=HG002-S9-H1-000001F;QSTART=946153;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:29:24,5 ./.:21:10,11 ./.:37:13,24 +chr20 964681 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946247;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:12,14 ./.:20:11,9 ./.:35:13,22 +chr20 964763 . T TAC 60 . QNAME=HG002-S9-H1-000001F;QSTART=946330;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.792481 GT:DP:AD 1|0:24:11,13 ./.:34:13,21 ./.:22:13,9 +chr20 964805 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946373;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:25:18,7 ./.:30:16,14 ./.:30:10,20 +chr20 964823 . CACACACACATAT C 60 . QNAME=HG002-S9-H1-000001F;QSTART=946392;QSTRAND=+;GCPCT=38;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.730242 GT:DP:AD 1|0:23:8,15 ./.:24:13,11 ./.:34:9,25 +chr20 964827 . CACACAT C 60 . QNAME=cluster23_scaffold_3;QSTART=24744733;QSTRAND=-;GCPCT=42;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.724408 GT:DP:AD ./.:26:19,7 ./.:23:12,11 1|0:42:24,18 +chr20 964831 . CAT C 60 . QNAME=cluster19_000000F;QSTART=24793282;QSTRAND=-;GCPCT=33;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0.792481 GT:DP:AD ./.:23:17,6 1|1:25:14,11 0|1:25:16,9 +chr20 965654 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947210;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:38:13,25 ./.:38:15,23 ./.:12:5,7 +chr20 965660 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=947216;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:19:6,13 ./.:37:22,15 ./.:45:20,25 +chr20 965819 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947375;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:11,18 ./.:18:6,12 ./.:35:14,21 +chr20 965855 . G C 60 . QNAME=HG002-S9-H1-000001F;QSTART=947411;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:31:15,16 ./.:31:24,7 ./.:40:22,18 +chr20 966123 . A T 60 . QNAME=HG002-S9-H1-000001F;QSTART=947679;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:17:11,6 ./.:19:7,12 ./.:22:14,8 +chr20 966156 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=947712;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:26:5,21 ./.:34:14,20 ./.:43:22,21 +chr20 966449 . G GTC 60 . QNAME=HG002-S9-H1-000001F;QSTART=948006;QSTRAND=+;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.792481 GT:DP:AD 1|0:30:13,17 ./.:33:21,12 ./.:24:5,19 +chr20 966451 . CT C 60 . QNAME=cluster23_scaffold_2;QSTART=24726663;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:45:23,22 ./.:16:6,10 0|1:23:15,8 +chr20 966507 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=948065;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:19:12,7 ./.:12:6,6 ./.:35:12,23 +chr20 966840 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=948398;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:28:10,18 ./.:19:9,10 ./.:47:24,23 +chr20 966858 . AAAACAAGC A 60 . QNAME=HG002-S9-H1-000001F;QSTART=948417;QSTRAND=+;GCPCT=33;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0.612197 GT:DP:AD 1|0:29:9,20 ./.:27:21,6 ./.:30:11,19 +chr20 970054 . TC T 60 . QNAME=cluster23_scaffold_2;QSTART=24723061;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0.5 GT:DP:AD ./.:29:17,12 ./.:24:15,9 0|1:29:16,13 +chr20 971192 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=952742;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:14:8,6 ./.:19:10,9 ./.:38:23,15 +chr20 971309 . A T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927343;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:34:15,19 ./.:18:7,11 ./.:30:9,21 +chr20 971575 . C T 60 . QNAME=HG002-S9-H2-000001F;QSTART=927609;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 0|1:31:12,19 ./.:22:14,8 ./.:39:23,16 +chr20 972263 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=953813;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:28:11,17 ./.:40:18,22 ./.:40:24,16 +chr20 972407 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=953957;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|1:34:24,10 ./.:13:7,6 ./.:33:23,10 +chr20 972507 . G T 60 . QNAME=HG002-S9-H2-000001F;QSTART=928541;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:21:10,11 ./.:14:8,6 ./.:24:5,19 +chr20 972633 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=954183;QSTRAND=+;GCPCT=100;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:28:7,21 ./.:35:15,20 ./.:35:20,15 +chr20 972877 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954427;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:13:8,5 ./.:29:22,7 ./.:44:22,22 +chr20 972959 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=954509;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|1:22:13,9 ./.:27:10,17 ./.:21:14,7 +chr20 973165 . TGG T 60 . QNAME=cluster23_scaffold_3;QSTART=24736401;QSTRAND=-;GCPCT=66;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.459148 GT:DP:AD ./.:28:11,17 ./.:22:17,5 1|0:32:23,9 +chr20 973459 . A ATTGT 60 . QNAME=cluster19_000000F;QSTART=24784652;QSTRAND=-;GCPCT=20;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.685475 GT:DP:AD ./.:30:8,22 1|0:34:22,12 1|0:40:20,20 +chr20 973459 . ATTGT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=955010;QSTRAND=+;GCPCT=20;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.685475 GT:DP:AD 1|1:22:11,11 ./.:35:17,18 ./.:31:15,16 +chr20 973633 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=955179;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:33:13,20 ./.:27:8,19 ./.:22:8,14 +chr20 974110 . G A 60 . QNAME=HG002-S9-H2-000001F;QSTART=930140;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 0|1:32:11,21 ./.:30:17,13 ./.:43:23,20 +chr20 974769 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=956315;QSTRAND=+;GCPCT=0;GTCNT=2,0,0,1;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|1:31:18,13 ./.:35:20,15 ./.:36:14,22 +chr20 975693 . C G 60 . QNAME=HG002-S9-H1-000001F;QSTART=957239;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:29:11,18 ./.:20:13,7 ./.:45:24,21 +chr20 976042 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=957588;QSTRAND=+;GCPCT=100;GTCNT=1,0,1,1;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|1:47:24,23 ./.:30:12,18 1|0:34:15,19 +chr20 976694 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=958240;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:47:23,24 ./.:20:13,7 ./.:38:14,24 +chr20 977237 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=958783;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:16:9,7 ./.:22:11,11 ./.:22:12,10 +chr20 977764 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=959310;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:20:8,12 ./.:34:24,10 ./.:28:23,5 +chr20 978561 . G T 60 . QNAME=cluster23_scaffold_2;QSTART=24714555;QSTRAND=-;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD ./.:23:18,5 ./.:17:5,12 0|1:32:25,7 +chr20 978696 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=960242;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:33:18,15 ./.:42:18,24 ./.:32:7,25 +chr20 979248 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=960794;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:24:11,13 ./.:31:24,7 ./.:14:6,8 +chr20 980145 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=961691;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:39:16,23 ./.:29:17,12 ./.:36:18,18 +chr20 980577 . T C 60 . QNAME=HG002-S9-H2-000001F;QSTART=936607;QSTRAND=+;GCPCT=0;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 0|1:16:9,7 1|0:26:15,11 ./.:37:19,18 +chr20 980652 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962198;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:27:14,13 ./.:46:21,25 ./.:26:6,20 +chr20 980884 . A C 60 . QNAME=HG002-S9-H1-000001F;QSTART=962430;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:20:9,11 ./.:32:19,13 ./.:30:10,20 +chr20 981108 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962654;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:38:17,21 ./.:25:13,12 ./.:23:7,16 +chr20 981138 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=962684;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,1,0;LCR=0 GT:DP:AD 1|0:16:7,9 ./.:34:20,14 ./.:26:20,6 +chr20 984922 . C CCCAT 60 . QNAME=HG002-S9-H1-000001F;QSTART=966469;QSTRAND=+;GCPCT=60;GTCNT=1,0,2,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.685475 GT:DP:AD 1|0:33:12,21 ./.:18:5,13 0|1:34:25,9 +chr20 990421 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=971971;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:32:22,10 ./.:31:15,16 ./.:40:24,16 +chr20 991150 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=972700;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0 GT:DP:AD 1|0:29:19,10 ./.:30:13,17 ./.:29:7,22 +chr20 991319 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=972869;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:26:17,9 ./.:13:7,6 ./.:42:20,22 +chr20 991428 . A AT 60 . QNAME=cluster19_000000F;QSTART=955698;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0.5 GT:DP:AD ./.:24:18,6 0|1:32:21,11 ./.:33:10,23 +chr20 992032 . G GGGAC 60 . QNAME=cluster23_scaffold_3;QSTART=24717528;QSTRAND=-;GCPCT=80;GTCNT=2,0,0,1;DPCNT=0,0,1,2;ADCNT=0,2,0,1;LCR=0.685475 GT:DP:AD ./.:40:15,25 ./.:24:17,7 1|1:10:5,5 +chr20 992091 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=973641;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:39:14,25 ./.:26:21,5 ./.:31:8,23 +chr20 992263 . C CT 60 . QNAME=cluster23_scaffold_3;QSTART=24717296;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,1,2;LCR=0.5 GT:DP:AD ./.:44:21,23 ./.:22:11,11 1|0:34:9,25 +chr20 992288 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=973838;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:6,23 ./.:34:15,19 ./.:35:14,21 +chr20 992532 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974082;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:26:20,6 ./.:31:15,16 ./.:40:21,19 +chr20 992797 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974347;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,2,0;LCR=0 GT:DP:AD 1|0:18:8,10 ./.:32:22,10 ./.:25:19,6 +chr20 993026 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=974576;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:26:16,10 ./.:30:22,8 ./.:36:18,18 +chr20 993059 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=974609;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:9,20 ./.:29:12,17 ./.:34:14,20 +chr20 993443 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=974993;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0 GT:DP:AD 1|0:26:17,9 ./.:31:16,15 ./.:27:21,6 +chr20 993795 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=975345;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:41:24,17 ./.:36:19,17 ./.:40:20,20 +chr20 993846 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975396;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:41:16,25 ./.:40:19,21 ./.:32:25,7 +chr20 993854 . G A 60 . QNAME=HG002-S9-H1-000001F;QSTART=975404;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0 GT:DP:AD 1|0:29:13,16 ./.:32:15,17 ./.:41:24,17 +chr20 993856 . G T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975406;QSTRAND=+;GCPCT=100;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,0,2;LCR=0 GT:DP:AD 1|0:22:6,16 ./.:20:14,6 ./.:24:5,19 +chr20 994379 . C T 60 . QNAME=HG002-S9-H1-000001F;QSTART=975929;QSTRAND=+;GCPCT=100;GTCNT=0,0,1,2;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|1:48:23,25 1|0:31:21,10 1|1:19:8,11 +chr20 994584 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=976134;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:32:25,7 ./.:19:6,13 ./.:30:7,23 +chr20 994605 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=976155;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:40:16,24 ./.:35:22,13 ./.:17:5,12 +chr20 995547 . GA G 60 . QNAME=cluster23_scaffold_2;QSTART=24697561;QSTRAND=-;GCPCT=50;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0.5 GT:DP:AD ./.:31:20,11 ./.:21:9,12 0|1:37:22,15 +chr20 996521 . A G 60 . QNAME=HG002-S9-H1-000001F;QSTART=978071;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,1,1,1;LCR=0 GT:DP:AD 1|0:17:10,7 ./.:39:24,15 ./.:26:14,12 +chr20 999077 . T C 60 . QNAME=HG002-S9-H1-000001F;QSTART=980627;QSTRAND=+;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,0,2,1;LCR=0 GT:DP:AD 1|0:19:8,11 ./.:27:14,13 ./.:40:16,24 +chr20 280211 . CAACAACAACAATTGTACTTCCCTAAGGTTACACCCAGCAGGTGCATAAAACCTACAGTAACAAT C 60 . QNAME=cluster23_scaffold_3;QSTART=25431380;QSTRAND=-;SVTYPE=DEL;SVLEN=64;HOMPCT=3.3;REMAP=tandem;REMAPHits=chr20:280274-280339.100,chr20:280338-280403.100;GCPCT=40;GTCNT=2,0,1,0;NumNeighbors=0;NeighId=2;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.939062 GT:DP:AD ./.:42:24,18 ./.:45:20,25 1/0:39:24,15 +chr20 380878 . TGATTAGCTCCGGTTTGCATCACCCGGACCGGGG T 60 . QNAME=cluster23_scaffold_3;QSTART=25330580;QSTRAND=-;SVTYPE=DEL;SVLEN=-33;GCPCT=61;GTCNT=2,0,1,0;DPCNT=0,0,1,2;ADCNT=0,3,0,0;LCR=0.971927 GT:DP:AD ./.:13:5,8 ./.:24:18,6 1/0:18:13,5 +chr20 485088 . AAAAAAAAAAAAAAAAAAAAAAATATATATATAT A 60 . QNAME=HG002-S9-H1-000001F;QSTART=464662;QSTRAND=+;SVTYPE=DEL;SVLEN=-33;GCPCT=0;GTCNT=2,0,1,0;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.336147 GT:DP:AD 1/0:26:11,15 ./.:21:12,9 ./.:20:14,6 +chr20 613783 . TGTGTGCTGAGTCCAGCTCAAGTCCCTTGGTTCCCACTGCTGCTAAGCATGCACG T 60 . QNAME=HG002-S9-H1-000001F;QSTART=593293;QSTRAND=+;SVTYPE=DEL;SVLEN=54;HOMPCT=29.3;REMAP=novel;GCPCT=56;GTCNT=0,0,1,2;NumNeighbors=0;NeighId=6;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.982293 GT:DP:AD 1/1:46:24,22 1/0:29:14,15 1/1:43:19,24 +chr20 709759 . AGTGTGCCCTGTGACCCCCTCATCCTGCCTTTGGATCACGAGCTGGGGTCGGGGGAGGGGATGGTGGGGGGGACACTGCTCGGTCCTCCACTCC A 60 . QNAME=HG002-S9-H2-000001F;QSTART=664783;QSTRAND=+;SVTYPE=DEL;SVLEN=93;HOMPCT=19.4;REMAP=tandem;REMAPHits=chr20:709851-709945.100;GCPCT=67;GTCNT=0,0,2,1;NumNeighbors=1;NeighId=8;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.944193 GT:DP:AD 0/1:16:7,9 1/0:26:21,5 1/1:41:23,18 chr20 727508 . . . . END=727540;SEGCNT=2 GT:SEG 0/0:0 1/1:2 0/0:0 chr20 727541 . . . . END=727555;SEGCNT=1 GT:SEG 0/0:0 0/1:1 0/0:0 chr20 727556 . . . . END=727556;SEGCNT=2 GT:SEG 0/1:1 0/1:1 0/1:1 chr20 727557 . . . . END=727590;SEGCNT=1 GT:SEG 0/1:1 0/0:0 0/1:1 -chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25;GCPCT=3;GTCNT=0,0,3,0 GT 0/1 1/0 0/1 -chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28;GCPCT=55;GTCNT=0,0,2,1 GT 0/1 1/0 1/1 -chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=103;HOMPCT=5.3;REMAP=tandem;REMAPHits=chr20:949618-949722.100;GCPCT=50;GTCNT=1,0,2,0;NumNeighbors=0;NeighId=10 GT 0/1 ./. 1/0 +chr20 751473 . CTTTATTTTATTTTATTTTATTTTAT C 60 . QNAME=HG002-S9-H2-000001F;QSTART=706369;QSTRAND=+;SVTYPE=DEL;SVLEN=-25;GCPCT=3;GTCNT=0,0,3,0;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.464678 GT:DP:AD 0/1:34:11,23 1/0:35:12,23 0/1:35:13,22 +chr20 800494 . TCGATTACCTGCTCCACCCTGACTCACTC T 60 . QNAME=HG002-S9-H2-000001F;QSTART=755521;QSTRAND=+;SVTYPE=DEL;SVLEN=-28;GCPCT=55;GTCNT=0,0,2,1;DPCNT=0,0,0,3;ADCNT=0,2,0,1;LCR=0.903641 GT:DP:AD 0/1:22:7,15 1/0:22:13,9 1/1:29:24,5 +chr20 949516 . CTCTGAAGAGGTAACATTTGAACTGAGATGTAGAGGGAGAGAAGGAACTAGCCATGTGGAGATCTGGGGGAGGAGCATTCCAGGCAGAGGGGATAGCAAGTGCA C 60 . QNAME=HG002-S9-H2-000001F;QSTART=905663;QSTRAND=+;SVTYPE=DEL;SVLEN=103;HOMPCT=5.3;REMAP=tandem;REMAPHits=chr20:949618-949722.100;GCPCT=50;GTCNT=1,0,2,0;NumNeighbors=0;NeighId=10;DPCNT=0,0,0,3;ADCNT=0,0,0,3;LCR=0.941771 GT:DP:AD 0/1:29:9,20 ./.:28:7,21 1/0:34:12,22 diff --git a/repo_utils/test_files/answer_key/subset_vcf2df.jl b/repo_utils/test_files/answer_key/subset_vcf2df.jl index c3bdbf12..f2b73fe7 100644 Binary files a/repo_utils/test_files/answer_key/subset_vcf2df.jl and b/repo_utils/test_files/answer_key/subset_vcf2df.jl differ diff --git a/repo_utils/test_files/include.bed b/repo_utils/test_files/include.bed new file mode 100644 index 00000000..adb28a82 --- /dev/null +++ b/repo_utils/test_files/include.bed @@ -0,0 +1,11 @@ +chr5 1234567 2345678 +chr21 10000000 20000000 +chr20 280300 280900 +chr20 100000 200000 +chr20 300000 620000 +chr20 642000 642350 +chr20 709000 709770 +chr20 709800 710000 +chr20 900000 1100000 +chr21 9000000 11000000 +chr19 1000000 1010000 diff --git a/repo_utils/test_files/make_anno.sh b/repo_utils/test_files/make_anno.sh index 8f86f668..5f4667bd 100644 --- a/repo_utils/test_files/make_anno.sh +++ b/repo_utils/test_files/make_anno.sh @@ -4,4 +4,7 @@ truvari anno hompct -i multi.vcf.gz \ | truvari anno gtcnt \ | truvari anno numneigh \ | truvari anno svinfo \ + | truvari anno dpcnt \ + | truvari anno lcr \ + | vcf-sort \ | bgzip > hold.vcf.gz diff --git a/repo_utils/test_files/multi.vcf.gz b/repo_utils/test_files/multi.vcf.gz index 021adf14..4db382c5 100644 Binary files a/repo_utils/test_files/multi.vcf.gz and b/repo_utils/test_files/multi.vcf.gz differ diff --git a/repo_utils/test_files/multi.vcf.gz.tbi b/repo_utils/test_files/multi.vcf.gz.tbi index 4e7a2aee..a6e3c499 100644 Binary files a/repo_utils/test_files/multi.vcf.gz.tbi and b/repo_utils/test_files/multi.vcf.gz.tbi differ diff --git a/repo_utils/truvari_ssshtests.sh b/repo_utils/truvari_ssshtests.sh index e01ae8af..8820c541 100644 --- a/repo_utils/truvari_ssshtests.sh +++ b/repo_utils/truvari_ssshtests.sh @@ -28,12 +28,12 @@ bench() { # run and test truvari bench f1=$1 f2=$2 - k=${f1}${f2} + k=$3 rm -rf $OD/bench${k} run test_bench_${k} $truv bench -b $INDIR/input${f1}.vcf.gz \ -c $INDIR/input${f2}.vcf.gz \ -f $INDIR/reference.fa \ - -o $OD/bench${k}/ ${3} + -o $OD/bench${k}/ ${4} assert_exit_code 0 for i in $ANSDIR/bench${k}/*.vcf @@ -128,9 +128,15 @@ assert_in_stdout "$(python3 -c 'import truvari; print(f"Truvari v{truvari.__vers # ------------------------------------------------------------ # bench # ------------------------------------------------------------ -bench 1 2 -bench 1 3 -bench 2 3 --multimatch +bench 1 2 12 +bench 1 3 13 +bench 2 3 23 --multimatch + +# Testing --includebed +bench 1 3 13_includebed "--includebed $INDIR/include.bed" + +# Testing --extend +bench 1 3 13_extend "--includebed $INDIR/include.bed --extend 500" rm -rf $OD/bench_giab run test_bench_giab $truv bench -b $INDIR/giab.vcf.gz \ @@ -251,6 +257,16 @@ run truvari_anno_density $truv anno density -i $INDIR/input3.vcf.gz \ assert_exit_code 0 df_check test_anno_density_result $ANSDIR/anno_density.jl $OD/anno_density.jl +# dpcnt +run test_anno_dpcnt $truv anno dpcnt -i $VCF -o $OD/anno_dpcnt.vcf +assert_exit_code 0 +info_tests dpcnt $OD/anno_dpcnt.vcf DPCNT,ADCNT + +# lcr +run test_anno_lcr $truv anno lcr -i $VCF -o $OD/anno_lcr.vcf +assert_exit_code 0 +info_tests lcr $OD/anno_lcr.vcf LCR + # ------------------------------------------------------------ # vcf2df # ------------------------------------------------------------ diff --git a/truvari/__init__.py b/truvari/__init__.py index fd3219dd..7de3f638 100644 --- a/truvari/__init__.py +++ b/truvari/__init__.py @@ -35,11 +35,13 @@ :meth:`ref_ranges` :meth:`seqsim` :meth:`sizesim` +:meth:`vcf_ranges` :meth:`weighted_score` Dev methods: :meth:`cmd_exe` :meth:`help_unknown_cmd` +:meth:`make_temp_filename` :meth:`optimize_df_memory` :meth:`restricted_float` :meth:`setup_logging` @@ -63,7 +65,7 @@ :data:`truvari.SZBINTYPE` """ -__version__ = '3.2.0' +__version__ = '3.3.0' from truvari.annos.af_calc import ( @@ -111,10 +113,13 @@ bed_ranges, cmd_exe, help_unknown_cmd, + make_temp_filename, ref_ranges, restricted_float, + restricted_int, setup_logging, setup_progressbar, + vcf_ranges, ) from truvari.vcf2df import ( diff --git a/truvari/annos/__init__.py b/truvari/annos/__init__.py index 263d2816..5e8a29cc 100644 --- a/truvari/annos/__init__.py +++ b/truvari/annos/__init__.py @@ -10,6 +10,8 @@ from truvari.annos.svinfo import svinfo_main from truvari.annos.bpovl import bpovl_main from truvari.annos.density import density_main +from truvari.annos.dpcnt import dpcnt_main +from truvari.annos.lcr import lcr_main __all__ = [ 'gcpct_main', @@ -22,5 +24,7 @@ 'numneigh_main', 'svinfo_main', 'bpovl_main', - 'density_main' + 'density_main', + 'dpcnt_main', + 'lcr_main' ] diff --git a/truvari/annos/bpovl.py b/truvari/annos/bpovl.py index 2b0eae02..1b05c3b7 100644 --- a/truvari/annos/bpovl.py +++ b/truvari/annos/bpovl.py @@ -26,9 +26,9 @@ def parse_args(args): help="Tab-delimited annotation file") parser.add_argument("-o", "--output", type=str, required=True, help="Output joblib DataFrame") - parser.add_argument("--sizemin", type=int, default=50, + parser.add_argument("--sizemin", type=truvari.restricted_int, default=50, help="Minimum size of variant to annotate (%(default)s)") - parser.add_argument("--spanmax", type=int, default=50000, + parser.add_argument("--spanmax", type=truvari.restricted_int, default=50000, help="Maximum span of SVs to annotate (%(default)s)") annosg = parser.add_argument_group("Annotation File Arguments") annosg.add_argument("-p", "--preset", choices=PRESET_FMTS.keys(), default=None, @@ -36,11 +36,11 @@ def parse_args(args): "-s, -b, -e, -c and -1 (%(default)s)")) annosg.add_argument("-c", "--comment", type=str, default="#", help="Skip lines started with character. (%(default)s)") - annosg.add_argument("-s", "--sequence", type=int, default=0, + annosg.add_argument("-s", "--sequence", type=truvari.restricted_int, default=0, help="Column of sequence/chromosome name. (%(default)s)") - annosg.add_argument("-b", "--begin", type=int, default=1, + annosg.add_argument("-b", "--begin", type=truvari.restricted_int, default=1, help="Column of start chromosomal position. (%(default)s)") - annosg.add_argument("-e", "--end", type=int, default=2, + annosg.add_argument("-e", "--end", type=truvari.restricted_int, default=2, help="Column of end chromosomal position. (%(default)s)") # The end column can be the same as the start column. [2] annosg.add_argument("-1", "--one-based", action='store_true', diff --git a/truvari/annos/density.py b/truvari/annos/density.py index 5dbb6cff..99d4f57d 100644 --- a/truvari/annos/density.py +++ b/truvari/annos/density.py @@ -25,7 +25,7 @@ def parse_args(args): help="Output joblib DataFrame") parser.add_argument("-m", "--mask", type=str, help="Mask bed file") - parser.add_argument("-w", "--windowsize", type=int, default=10000, + parser.add_argument("-w", "--windowsize", type=truvari.restricted_int, default=10000, help="Window size (%(default)s)") parser.add_argument("-t", "--threshold", type=float, default=3, help="std for identifying 'dense' regions (%(default)s)") diff --git a/truvari/annos/dpcnt.py b/truvari/annos/dpcnt.py new file mode 100644 index 00000000..9a9e4400 --- /dev/null +++ b/truvari/annos/dpcnt.py @@ -0,0 +1,90 @@ +""" +Quick utility to count how many samples have >= Nx coverage per-variant +""" +import sys +import bisect +import logging +import argparse + +import pysam +import truvari + +def parse_args(args): + """ + Pull the command line parameters + """ + parser = argparse.ArgumentParser(prog="dpcnt", description=__doc__, + formatter_class=argparse.RawDescriptionHelpFormatter) + parser.add_argument("-i", "--input", type=str, default="/dev/stdin", + help="VCF to annotate (stdin)") + parser.add_argument("-b", "--bins", type=str, default="0,5,10,15", + help="Coverage bins to bisect left the counts (%(default)s)") + parser.add_argument("--no-ad", action="store_false", + help="Skip adding ADCNT bins") + parser.add_argument("-o", "--output", type=str, default="/dev/stdout", + help="Output filename (stdout)") + truvari.setup_logging() + return parser.parse_args(args) + + +def edit_header(my_vcf, bins, add_ad=False): + """ + Add INFO for new field to vcf + """ + header = my_vcf.header.copy() + desc = 'Description="Count of samples with >= ' + ",".join([f"{_}x" for _ in bins][:-1]) + '">' + header.add_line('##INFO=') % (args.maxgt, args.buffer)) out = pysam.VariantFile(args.output, 'w', header=header) diff --git a/truvari/annos/lcr.py b/truvari/annos/lcr.py new file mode 100644 index 00000000..d40ef584 --- /dev/null +++ b/truvari/annos/lcr.py @@ -0,0 +1,103 @@ +""" +Annotate low complexity region entropy score for variants +Credit: https://jszym.com/blog/dna_protein_complexity/ +""" +import math +import logging +import argparse + +import pysam + +import truvari + +def sequence_to_repvec(sequence, N): + """ + Computes the repetition vector (as seen in Wooton, 1993) from a + given sequence of a biopolymer with `N` possible residues. + + :param sequence: the nucleotide or protein sequence to generate a repetition vector for. + :param N: the total number of possible residues in the biopolymer `sequence` belongs to. + """ + encountered_residues = set() + repvec = [] + + for residue in sequence: + if residue not in encountered_residues: + residue_count = sequence.count(residue) + + repvec.append(residue_count) + + encountered_residues.add(residue) + + if len(encountered_residues) == N: + break + + while len(repvec) < N: + repvec.append(0) + + return sorted(repvec, reverse=True) + +def sequence_entropy(sequence, N=4): + """ + Computes the Shannon Entropy of a given sequence of a + biopolymer with `N` possible residues. See (Wooton, 1993) + for more. + + :param sequence: the nucleotide or protein sequence whose Shannon Entropy is to calculated. + :param N: the total number of possible residues in the biopolymer `sequence` belongs to. + """ + repvec = sequence_to_repvec(sequence, N) + + L = len(sequence) + + entropy = sum([-1*(n/L)*math.log((n/L), N) for n in repvec if n != 0]) + + return entropy + +def edit_header(my_vcf): + """ + Add INFO for new field to vcf + """ + header = my_vcf.header.copy() + header.add_line(('##INFO=')) + return header + +def add_lcr(vcf, n_header): + """ + Adds LCR to each entry in VCF and yields them + """ + if not n_header: + n_header = edit_header(vcf) + for entry in vcf: + seq = entry.alts[0] if len(entry.alts[0]) > len(entry.ref) else entry.ref + score = sequence_entropy(seq) + entry.translate(n_header) + entry.info["LCR"] = score + yield entry + +def parse_args(args): + """ + Pull the command line parameters + """ + parser = argparse.ArgumentParser(prog="lcr", description=__doc__, + formatter_class=argparse.RawDescriptionHelpFormatter) + parser.add_argument("-i", "--input", type=str, default="/dev/stdin", + help="VCF to annotate (stdin)") + parser.add_argument("-o", "--output", type=str, default="/dev/stdout", + help="Output filename (stdout)") + truvari.setup_logging() + return parser.parse_args(args) + +def lcr_main(cmdargs): + """ + Main + """ + args = parse_args(cmdargs) + vcf = pysam.VariantFile(args.input) + n_header = edit_header(vcf) + out = pysam.VariantFile(args.output, 'w', header=n_header) + for entry in add_lcr(vcf, n_header): + out.write(entry) + out.close() + logging.info("Finished lcr") diff --git a/truvari/annos/numneigh.py b/truvari/annos/numneigh.py index 584dd952..53df9450 100644 --- a/truvari/annos/numneigh.py +++ b/truvari/annos/numneigh.py @@ -29,9 +29,9 @@ def parse_args(args): help="VCF to annotate") parser.add_argument("-o", "--output", type=str, default="/dev/stdout", help="Output vcf (stdout)") - parser.add_argument("-r", "--refdist", type=int, default=1000, + parser.add_argument("-r", "--refdist", type=truvari.restricted_int, default=1000, help="Max reference location distance (%(default)s)") - parser.add_argument("-s", "--sizemin", type=int, default=50, + parser.add_argument("-s", "--sizemin", type=truvari.restricted_int, default=50, help="Minimum variant size to consider for annotation (%(default)s)") parser.add_argument("--passonly", action="store_true", default=False, help="Only count calls with FILTER == PASS") diff --git a/truvari/annos/remap.py b/truvari/annos/remap.py index b9ce91dd..36df9753 100644 --- a/truvari/annos/remap.py +++ b/truvari/annos/remap.py @@ -150,14 +150,14 @@ def parse_args(args): help="BWA indexed reference") parser.add_argument("-o", "--output", default="/dev/stdout", help="Output VCF (%(default)s)") - parser.add_argument("-m", "--minlength", default=50, type=int, + parser.add_argument("-m", "--minlength", default=50, type=truvari.restricted_int, help="Smallest length of allele to remap (%(default)s)") parser.add_argument("-t", "--threshold", type=truvari.restricted_float, default=.8, help="Threshold for pct of allele covered to consider hit (%(default)s)") - parser.add_argument("-d", "--dist", type=int, default=10, + parser.add_argument("-d", "--dist", type=truvari.restricted_int, default=10, help=("Minimum distance an alignment must be from a DEL's " "position to be considered (%(default)s))")) - parser.add_argument("-H", "--hits", type=int, default=0, + parser.add_argument("-H", "--hits", type=truvari.restricted_int, default=0, help="Report top hits as chr:start-end.pct (max %(default)s)") parser.add_argument("--debug", action="store_true", help="Verbose logging") diff --git a/truvari/annos/repmask.py b/truvari/annos/repmask.py index 1643bcc7..63729f9f 100644 --- a/truvari/annos/repmask.py +++ b/truvari/annos/repmask.py @@ -182,15 +182,15 @@ def parse_args(args): help="Output filename (%(default)s)") parser.add_argument("-e", "--executable", type=str, default="RepeatMasker", help="Path to RepeatMasker (%(default)s)") - parser.add_argument("-m", "--min-length", type=int, default=50, + parser.add_argument("-m", "--min-length", type=truvari.restricted_int, default=50, help="Minimum size of entry to annotate (%(default)s)") - parser.add_argument("-M", "--max-length", type=int, default=50000, + parser.add_argument("-M", "--max-length", type=truvari.restricted_int, default=50000, help="Maximum size of entry to annotate (%(default)s)") parser.add_argument("-t", "--threshold", type=truvari.restricted_float, default=.8, help="Threshold for pct of allele covered (%(default)s)") parser.add_argument("-p", "--params", type=str, default=DEFAULTPARAMS, help="Default parameter string to send to RepeatMasker (%(default)s)") - parser.add_argument("-T", "--threads", type=int, default=os.cpu_count(), + parser.add_argument("-T", "--threads", type=truvari.restricted_int, default=os.cpu_count(), help="Number of threads to use (%(default)s)") parser.add_argument("--debug", action="store_true", help="Verbose logging") diff --git a/truvari/annos/svinfo.py b/truvari/annos/svinfo.py index 4d57f7c8..100f588b 100644 --- a/truvari/annos/svinfo.py +++ b/truvari/annos/svinfo.py @@ -18,7 +18,7 @@ def parse_args(args): help="VCF to annotate (stdin)") parser.add_argument("-o", "--output", type=str, default="/dev/stdout", help="Output filename (stdout)") - parser.add_argument("-m", "--minsize", type=int, default=50, + parser.add_argument("-m", "--minsize", type=truvari.restricted_int, default=50, help="Minimum size of entry to annotate (%(default)s)") truvari.setup_logging() return parser.parse_args(args) diff --git a/truvari/annos/trf.py b/truvari/annos/trf.py index d876df29..e4dae91a 100644 --- a/truvari/annos/trf.py +++ b/truvari/annos/trf.py @@ -71,6 +71,9 @@ def process_entries(ref_section): out = StringIO() decimal.getcontext().prec = 1 for entry in v.fetch(chrom, start, stop): + # Prevent duplication + if not (entry.start >= start and entry.start < stop): + continue if truvari.entry_size(entry) >= trfshared.args.min_length: key = f"{entry.chrom}:{entry.start}-{entry.stop}.{hash(entry.alts[0])}" entry = tanno.annotate(entry, key, new_header) @@ -99,13 +102,13 @@ def parse_args(args): help="Simple repeats bed") parser.add_argument("-f", "--reference", type=str, required=True, help="Reference fasta file") - parser.add_argument("-m", "--min-length", type=int, default=50, + parser.add_argument("-m", "--min-length", type=truvari.restricted_int, default=50, help="Minimum size of entry to annotate (%(default)s)") - parser.add_argument("-M", "--max-length", type=int, default=10000, + parser.add_argument("-M", "--max-length", type=truvari.restricted_int, default=10000, help="Maximum size of sequence to run through trf (%(default)s)") - parser.add_argument("-t", "--threads", type=int, default=multiprocessing.cpu_count(), + parser.add_argument("-t", "--threads", type=truvari.restricted_int, default=multiprocessing.cpu_count(), help="Number of threads to use (%(default)s)") - parser.add_argument("-C", "--chunk-size", type=int, default=1, + parser.add_argument("-C", "--chunk-size", type=truvari.restricted_int, default=1, help="Size (in mbs) of reference chunks for parallelization (%(default)s)") parser.add_argument("--debug", action="store_true", help="Verbose logging") diff --git a/truvari/annotation.py b/truvari/annotation.py index 96be788d..91e014d6 100644 --- a/truvari/annotation.py +++ b/truvari/annotation.py @@ -14,11 +14,13 @@ "numneigh": tannos.numneigh_main, "svinfo": tannos.svinfo_main, "bpovl": tannos.bpovl_main, - "density": tannos.density_main} + "density": tannos.density_main, + "dpcnt": tannos.dpcnt_main, + "lcr": tannos.lcr_main} USAGE = """\ Truvari annotations: - gcpct, gtcnt, trf, grm, repmask, remap, hompct, numneigh, svinfo, bpovl, density + gcpct, gtcnt, trf, grm, repmask, remap, hompct, numneigh, svinfo, bpovl, density, dpcnt, lcr """ diff --git a/truvari/bench.py b/truvari/bench.py index 34b0dd4a..e20c20b7 100644 --- a/truvari/bench.py +++ b/truvari/bench.py @@ -67,6 +67,9 @@ def __eq__(self, other): def __str__(self): return f'{self.state} {self.score} ->\n {self.base} {self.comp}' + def __repr__(self): + return f'' + class Matcher(): """ @@ -80,7 +83,7 @@ class Matcher(): >>> v = pysam.VariantFile('repo_utils/test_files/input1.vcf.gz') >>> one = next(v); two = next(v) >>> mat.build_match(one, two) - <0 False chr20:66235->chr20:68303> + """ def __init__(self, params=None, args=None): @@ -603,21 +606,21 @@ def parse_args(args): help="Turn on progress monitoring") thresg = parser.add_argument_group("Comparison Threshold Arguments") - thresg.add_argument("-r", "--refdist", type=int, default=defaults.refdist, + thresg.add_argument("-r", "--refdist", type=truvari.restricted_int, default=defaults.refdist, help="Max reference location distance (%(default)s)") thresg.add_argument("-p", "--pctsim", type=truvari.restricted_float, default=defaults.pctsim, help="Min percent allele sequence similarity. Set to 0 to ignore. (%(default)s)") - thresg.add_argument("-B", "--minhaplen", type=int, default=defaults.minhaplen, + thresg.add_argument("-B", "--minhaplen", type=truvari.restricted_int, default=defaults.minhaplen, help="Minimum haplotype sequence length to create (%(default)s)") thresg.add_argument("-P", "--pctsize", type=truvari.restricted_float, default=defaults.pctsize, help="Min pct allele size similarity (minvarsize/maxvarsize) (%(default)s)") thresg.add_argument("-O", "--pctovl", type=truvari.restricted_float, default=defaults.pctovl, - help="Min pct reciprocal overlap (%(default)s) for DEL events") + help="Min pct reciprocal overlap (%(default)s)") thresg.add_argument("-t", "--typeignore", action="store_true", default=defaults.typeignore, help="Variant types don't need to match to compare (%(default)s)") thresg.add_argument("--use-lev", action="store_true", help="Use the Levenshtein distance ratio instead of edlib editDistance ratio (%(default)s)") - thresg.add_argument("-C", "--chunksize", type=int, default=defaults.chunksize, + thresg.add_argument("-C", "--chunksize", type=truvari.restricted_int, default=defaults.chunksize, help="Max reference distance to compare calls (%(default)s)") genoty = parser.add_argument_group("Genotype Comparison Arguments") @@ -629,11 +632,11 @@ def parse_args(args): help="Comparison calls sample to use (first)") filteg = parser.add_argument_group("Filtering Arguments") - filteg.add_argument("-s", "--sizemin", type=int, default=defaults.sizemin, + filteg.add_argument("-s", "--sizemin", type=truvari.restricted_int, default=defaults.sizemin, help="Minimum variant size to consider for comparison (%(default)s)") - filteg.add_argument("-S", "--sizefilt", type=int, default=defaults.sizefilt, + filteg.add_argument("-S", "--sizefilt", type=truvari.restricted_int, default=defaults.sizefilt, help="Minimum variant size to load into IntervalTree (%(default)s)") - filteg.add_argument("--sizemax", type=int, default=defaults.sizemax, + filteg.add_argument("--sizemax", type=truvari.restricted_int, default=defaults.sizemax, help="Maximum variant size to consider for comparison (%(default)s)") filteg.add_argument("--passonly", action="store_true", default=defaults.passonly, help="Only consider calls with FILTER == PASS") @@ -641,15 +644,13 @@ def parse_args(args): help="Don't include 0/0 or ./. GT calls from all (a), base (b), or comp (c) vcfs (%(default)s)") filteg.add_argument("--includebed", type=str, default=None, help="Bed file of regions in the genome to include only calls overlapping") + filteg.add_argument("--extend", type=truvari.restricted_int, default=0, + help="Distance to allow comp entries outside of includebed regions (%(default)s)") filteg.add_argument("--multimatch", action="store_true", default=defaults.multimatch, help=("Allow base calls to match multiple comparison calls, and vice versa. " "Output vcfs will have redundant entries. (%(default)s)")) args = parser.parse_args(args) - if args.pctsim != 0 and not args.reference: - parser.error("--reference is required when --pctsim is set") - if args.chunksize < args.refdist: - parser.error("--chunksize must be >= --refdist") return args @@ -659,43 +660,51 @@ def check_params(args): All errors are written to stderr without logging since failures mean no output """ check_fail = False + if args.pctsim != 0 and not args.reference: + logging.error("--reference is required when --pctsim is set") + check_fail = True + if args.chunksize < args.refdist: + logging.error("--chunksize must be >= --refdist") + check_fail = True + if args.extend and args.includebed is None: + logging.error("--extend can only be used when --includebed is set") + check_fail = True if os.path.isdir(args.output): logging.error("Output directory '%s' already exists", args.output) check_fail = True if not os.path.exists(args.comp): - check_fail = True logging.error("File %s does not exist", args.comp) - if not os.path.exists(args.base): check_fail = True + if not os.path.exists(args.base): logging.error("File %s does not exist", args.base) - if not args.comp.endswith(".gz"): check_fail = True + if not args.comp.endswith(".gz"): logging.error( "Comparison vcf %s does not end with .gz. Must be bgzip'd", args.comp) - if not os.path.exists(args.comp + '.tbi'): check_fail = True + if not os.path.exists(args.comp + '.tbi'): logging.error( "Comparison vcf index %s.tbi does not exist. Must be indexed", args.comp) - if not args.base.endswith(".gz"): check_fail = True + if not args.base.endswith(".gz"): logging.error( "Base vcf %s does not end with .gz. Must be bgzip'd", args.base) - if not os.path.exists(args.base + '.tbi'): check_fail = True + if not os.path.exists(args.base + '.tbi'): logging.error( "Base vcf index %s.tbi does not exist. Must be indexed", args.base) - if args.includebed and not os.path.exists(args.includebed): check_fail = True + if args.includebed and not os.path.exists(args.includebed): logging.error("Include bed %s does not exist", args.includebed) + check_fail = True return check_fail def check_sample(vcf_fn, sampleId=None): """ - Return the given sampleId from the var_file - if sampleId is None, return the first sample - if there is no first sample in the var_file, raise an error + Checks that a sample is inside a vcf + Returns True if check failed """ vcf_file = pysam.VariantFile(vcf_fn) check_fail = False @@ -710,14 +719,10 @@ def check_sample(vcf_fn, sampleId=None): def check_inputs(args): """ - Checks the inputs against the arguments as much as possible before creating any output - Returns: - vcf_bse + Checks the inputs to ensure expected values are found inside of files + Returns True if check failed """ - check_fail = False - check_fail = check_sample(args.base, args.bSample) - check_fail = check_sample(args.comp, args.cSample) - return check_fail + return check_sample(args.base, args.bSample) or check_sample(args.comp, args.cSample) def setup_outputs(args): @@ -738,7 +743,6 @@ def setup_outputs(args): outputs["vcf_comp"] = pysam.VariantFile(args.comp) outputs["n_comp_header"] = edit_header(outputs["vcf_comp"]) - # Setup outputs outputs["tpb_out"] = pysam.VariantFile(os.path.join( args.output, "tp-base.vcf"), 'w', header=outputs["n_base_header"]) outputs["tpc_out"] = pysam.VariantFile(os.path.join( @@ -783,17 +787,18 @@ def bench_main(cmdargs): args.includebed, args.sizemax) - merged_overlaps = regions.merge_overlaps() - if merged_overlaps: - logging.info("Found %d chromosomes with overlapping regions", - len(merged_overlaps)) - logging.debug("CHRs: %s", merged_overlaps) + regions.merge_overlaps() + regions_extended = regions.extend(args.extend) if args.extend else regions base_i = regions.iterate(base) - comp_i = regions.iterate(comp) + comp_i = regions_extended.iterate(comp) chunks = chunker(matcher, ('base', base_i), ('comp', comp_i)) for call in itertools.chain.from_iterable(map(compare_chunk, chunks)): + # setting non-matched call variants that are not fully contained in the original regions to None + # These don't count as FP or TP and don't appear in the output vcf files + if args.extend and call.comp is not None and not call.state and not regions.include(call.comp): + call.comp = None output_writer(call, outputs, args.sizemin) with open(os.path.join(args.output, "summary.txt"), 'w') as fout: diff --git a/truvari/collapse.py b/truvari/collapse.py index c0d1c84c..2e95c634 100644 --- a/truvari/collapse.py +++ b/truvari/collapse.py @@ -25,7 +25,8 @@ def collapse_chunk(chunk): matcher, chunk_dict, chunk_id = chunk calls = chunk_dict['base'] logging.debug(f"Comparing chunk {calls}") - calls.sort(reverse=True, key=matcher.sorter) + # Need to add a deterministic sort here... + calls.sort(key=matcher.sorter) # keep_key : [keep entry, [collap matches], match_id] ret = {} @@ -143,29 +144,55 @@ def hap_resolve(entryA, entryB): return False return True +def sort_length(b1, b2): + """ + Order entries from longest to shortest SVLEN, ties are by alphanumeric of REF + """ + s1 = truvari.entry_size(b1) + s2 = truvari.entry_size(b2) + if s1 < s2: + return 1 + if s1 > s2: + return -1 + if b1.ref < b2.ref: + return 1 + if b1.ref > b2.ref: + return -1 + return 0 def sort_first(b1, b2): """ - Remove all but the single best neighbor from the list of neighs in-place + Order entries from left-most to right-most POS """ - return b1.pos < b2.pos + if b1.pos > b2.pos: + return 1 + if b1.pos < b2.pos: + return -1 + return sort_length(b1, b2) def sort_maxqual(b1, b2): """ - Swap the entry with the one containing the call with the maximum quality score + Order entries from highest to lowest qual """ - return b1.qual < b2.qual + if b1.qual < b2.qual: + return 1 + if b1.qual > b2.qual: + return -1 + return sort_first(b1, b2) def sort_common(b1, b2): """ - Swap the entry with the one containing the highest MAC + Order entries from highest to lowest MAC """ mac1 = truvari.allele_freq_annos(b1)["MAC"] mac2 = truvari.allele_freq_annos(b2)["MAC"] - return mac1 < mac2 - + if mac1 < mac2: + return 1 + if mac1 > mac2: + return -1 + return sort_first(b1, b2) SORTS = {'first': cmp_to_key(sort_first), 'maxqual': cmp_to_key(sort_maxqual), @@ -220,11 +247,11 @@ def parse_args(args): # trubench.add_comparison_args(parser) thresg = parser.add_argument_group("Comparison Threshold Arguments") - thresg.add_argument("-r", "--refdist", type=int, default=500, + thresg.add_argument("-r", "--refdist", type=truvari.restricted_int, default=500, help="Max reference location distance (%(default)s)") thresg.add_argument("-p", "--pctsim", type=truvari.restricted_float, default=0.95, help="Min percent allele sequence similarity. Set to 0 to ignore. (%(default)s)") - thresg.add_argument("-B", "--minhaplen", type=truvari.restricted_float, default=50, + thresg.add_argument("-B", "--minhaplen", type=truvari.restricted_int, default=50, help="Minimum haplotype sequence length to create (%(default)s)") thresg.add_argument("-P", "--pctsize", type=truvari.restricted_float, default=0.95, help="Min pct allele size similarity (minvarsize/maxvarsize) (%(default)s)") @@ -243,9 +270,9 @@ def parse_args(args): help=("Comma separated list of FORMAT fields to consolidate into the kept " "entry by taking the first non-null from all neighbors (%(default)s)")) filteg = parser.add_argument_group("Filtering Arguments") - filteg.add_argument("-s", "--sizemin", type=int, default=50, + filteg.add_argument("-s", "--sizemin", type=truvari.restricted_int, default=50, help="Minimum variant size to consider for comparison (%(default)s)") - filteg.add_argument("-S", "--sizemax", type=int, default=50000, + filteg.add_argument("-S", "--sizemax", type=truvari.restricted_int, default=50000, help="Maximum variant size to consider for comparison (%(default)s)") filteg.add_argument("--passonly", action="store_true", default=False, help="Only consider calls with FILTER == PASS") diff --git a/truvari/consistency_report.py b/truvari/consistency_report.py index ab53a7ed..fb24fad1 100644 --- a/truvari/consistency_report.py +++ b/truvari/consistency_report.py @@ -18,8 +18,8 @@ def parse_vcf(fn): """ Simple vcf reader """ - VCFLine = namedtuple( - "VCFline", "CHROM POS ID REF ALT QUAL FILT INFO FORMAT SAMPLES") + VCFLine = namedtuple("VCFline", + "CHROM POS ID REF ALT QUAL FILT INFO FORMAT SAMPLES") if fn.endswith(".gz"): fh = io.TextIOWrapper(gzip.open(fn)) else: @@ -92,7 +92,7 @@ def create_file_intersections(allVCFs): def parse_args(args): """ parse args """ - parser = argparse.ArgumentParser(prog="consistency_report", description=__doc__, + parser = argparse.ArgumentParser(prog="consistency", description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter) parser.add_argument("allVCFs", metavar='VCFs', nargs='+', help="VCFs to intersect") diff --git a/truvari/divide.py b/truvari/divide.py index c1d2f666..0f086a11 100644 --- a/truvari/divide.py +++ b/truvari/divide.py @@ -22,9 +22,9 @@ def parse_args(args): help="VCF to split") parser.add_argument("output", metavar="DIR", help="Output directory to save parts") - parser.add_argument("-b", "--buffer", type=int, default=1000, + parser.add_argument("-b", "--buffer", type=truvari.restricted_int, default=1000, help="Buffer to make mini-clusters (%(default)s)") - parser.add_argument("-m", "--min", type=int, default=100, + parser.add_argument("-m", "--min", type=truvari.restricted_int, default=100, help="Minimum number of entries per-vcf (%(default)s)") parser.add_argument("--no-compress", action="store_false", help="Don't attempt to compress/index sub-VCFs") diff --git a/truvari/region_vcf_iter.py b/truvari/region_vcf_iter.py index 081cd8e1..3a381009 100644 --- a/truvari/region_vcf_iter.py +++ b/truvari/region_vcf_iter.py @@ -2,6 +2,7 @@ Helper class to specify included regions of the genome when iterating events. """ import sys +import copy import gzip import logging from collections import defaultdict @@ -65,7 +66,10 @@ def merge_overlaps(self): post_len = len(self.tree[i]) if pre_len != post_len: chr_with_overlaps.append(i) - return chr_with_overlaps + if chr_with_overlaps: + logging.info("Found %d chromosomes with overlapping regions", + len(chr_with_overlaps)) + logging.debug("CHRs: %s", chr_with_overlaps) def iterate(self, vcf_file): """ @@ -95,6 +99,19 @@ def include(self, entry): return overlaps return overlaps and len(self.tree[entry.chrom].overlap(astart, aend)) == 1 + def extend(self, pad): + """ + Extends all intervals by a fixed number of bases on each side + Returns a copy of this IntervalTree + """ + logging.info("Extending the regions by %d bases", pad) + ret = copy.deepcopy(self) + + for chrom in ret.tree: + ret.tree[chrom] = IntervalTree.from_tuples(((max(0, i.begin - pad), i.end + pad)) for i in ret.tree[chrom]) + + ret.merge_overlaps() + return ret def build_anno_tree(filename, chrom_col=0, start_col=1, end_col=2, one_based=False, comment='#'): """ diff --git a/truvari/segmentation.py b/truvari/segmentation.py index e8c88a0b..d61af988 100644 --- a/truvari/segmentation.py +++ b/truvari/segmentation.py @@ -16,7 +16,7 @@ def parse_args(args): """ Pull the command line parameters """ - parser = argparse.ArgumentParser(prog="vcf2df", description=__doc__, + parser = argparse.ArgumentParser(prog="segment", description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter) parser.add_argument("vcf", metavar="IN", diff --git a/truvari/utils.py b/truvari/utils.py index 1f1885f9..af0d71ec 100644 --- a/truvari/utils.py +++ b/truvari/utils.py @@ -8,6 +8,7 @@ import signal import logging import argparse +import tempfile import warnings import subprocess from datetime import timedelta @@ -45,6 +46,29 @@ def restricted_float(x): f"{x} not in range (0, 1)") return x +def restricted_int(x): + """ + Restrict int to positive. Raises argparse.ArgumentTypeError if int is negative + Used with :class:`argparse.ArgumentParser.add_argument` type parameter + + :param `x`: number to check + :type `x`: int + + :return: input number + :rtype: float + + Example + >>> import truvari + >>> truvari.restricted_int(5) + 5 + >>> truvari.restricted_int(-2) + Traceback (most recent call last): + argparse.ArgumentTypeError: -2 is < 0 + """ + x = int(x) + if x < 0: + raise argparse.ArgumentTypeError(f"{x} is < 0") + return x def setup_progressbar(size): """ @@ -265,6 +289,57 @@ def bed_ranges(bed, chunk_size=10000000): stop += chunk_size yield data[0], start, final_stop +def vcf_ranges(vcf, min_dist=1000): + """ + Chunk vcf into discrete pieces. Useful for multiprocessing. + + :param `vcf`: Filename of vcf to find ranges + :type `vcf`: string + :param `min_dist`: Minimum distance between entries for new range + :type `min_dist`: int, optional + + :return: generator of tuples (ref_name, start, stop) + :rtype: iterator + + Example + >>> import truvari + >>> gen = truvari.vcf_ranges("repo_utils/test_files/input1.vcf.gz") + >>> print(len([_ for _ in gen])) + 228 + """ + in_vcf = pysam.VariantFile(vcf) + + cur_chrom = None + min_start = None + max_end = None + for entry in in_vcf: + if cur_chrom is None: + cur_chrom = entry.chrom + min_start = entry.start + max_end = entry.stop + elif entry.chrom != cur_chrom: + yield cur_chrom, min_start, max_end + cur_chrom = entry.chrom + min_start = entry.start + max_end = entry.stop + elif entry.start >= max_end + min_dist: + yield cur_chrom, min_start, max_end + cur_chrom = entry.chrom + min_start = entry.start + max_end = entry.stop + else: + max_end = max(max_end, entry.stop) + + yield cur_chrom, min_start, max_end + +def make_temp_filename(tmpdir=None, extension=""): + """ + Get a random filename in a tmpdir with an optional extension + """ + if tmpdir is None: + tmpdir = tempfile._get_default_tempdir() # pylint: disable=protected-access + fn = os.path.join(tmpdir, next(tempfile._get_candidate_names())) + extension # pylint: disable=protected-access + return fn def help_unknown_cmd(user_cmd, avail_cmds, threshold=.5): """